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(1)
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X-ray diffraction
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(1)
Authors
(79)
Arrowsmith CH
(3)
Bountra C
(3)
Edwards AM
(3)
Kang Y
(3)
Liu ZJ
(3)
Shen M
(3)
Silvennoinen O
(3)
Structural Genomics Consortium (SGC)
(3)
Wan L
(3)
Wang BC
(3)
Wei Y
(3)
Xing Y
(3)
Xu H
(3)
Yang J
(3)
Zhao M
(3)
Zheng A
(3)
Bertino J
(2)
Bian C
(2)
Bian CB
(2)
Bochkarev A
(2)
Chen C
(2)
Cheng C
(2)
Guo Y
(2)
Guo YH
(2)
Hang X
(2)
Jiang YZ
(2)
Jin J
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Jin JF
(2)
Kim H
(2)
Lam R
(2)
Liu K
(2)
Lu X
(2)
MacKenzie F
(2)
Min J
(2)
Pawson T
(2)
Raba M
(2)
Remiszewski S
(2)
Rowicki M
(2)
Shao ZM
(2)
Smith HA
(2)
Southeast Collaboratory for Structural Genomics (SECSG)
(2)
Weigelt J
(2)
Wu CG
(2)
Wu S
(2)
Xu C
(2)
Yuan M
(2)
Zhang L
(2)
Zhao DY
(2)
Chan C
(1)
Chen YP
(1)
Dang W
(1)
Fedorov O
(1)
Guo F
(1)
Inoue M
(1)
Kigawa T
(1)
Knapp S
(1)
La Thangue NB
(1)
Lee W
(1)
Li CL
(1)
Moehlenbrink J
(1)
Muto Y
(1)
Nunez-Alonso G
(1)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(1)
Rao Z
(1)
Satyshur K
(1)
Satyshur KA
(1)
Savitsky P
(1)
Shah N
(1)
Shaw N
(1)
Shirouzu M
(1)
Siejka P
(1)
Sorrell FJ
(1)
Stanevich V
(1)
Tallant C
(1)
Terada T
(1)
Yang WZ
(1)
Yokoyama S
(1)
Yuan HS
(1)
von Delft F
(1)
Homo / hetero assembly
(2)
homo
(6)
hetero
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Assembly composition
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protein structure
(6)
protein/protein complex
(5)
Assembly polymer count
(2)
dimer
(7)
monomer
(4)
Resolution distribution
1.0 - 1.5
(2)
1.5 - 2
(5)
2.5 - 3
(3)
Release year distribution
2005 - 2010
(7)
2010 - 2015
(3)
2015 - 2020
(1)
2020 - 2025
(2)
Journal
(5)
To be published
(5)
Nat Cancer
(2)
Proc Natl Acad Sci U S A
(2)
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(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(11)
Organism name
(1)
Homo sapiens
(11)
Molecule name
(5)
100 kDa coactivator
(11)
EBNA2 coactivator p100
(11)
Staphylococcal nuclease domain-containing protein 1
(11)
Tudor domain-containing protein 11
(11)
p100 co-activator
(11)
Molecule type
(1)
Protein
(11)
Gene names
(2)
SND1
(11)
TDRD11
(11)
Interacting Molecules
(5)
Protein LYRIC
(1)
SYNTHETIC PEPTIDE
(1)
Staphylococcal nuclease domain-containing protein 1
(1)
Transcription factor E2F1
(1)
dimethylated arginine peptide R14me2s
(1)
Interacting ligands
(8)
GOL : GLYCEROL
(3)
CIT : CITRIC ACID
(1)
CL : CHLORIDE ION
(1)
CS : CESIUM ION
(1)
QOV : 5-chloro-2-methoxy-N-(2-methyl[1,2,4]triazolo[1,5-a]pyridin-8-yl)benzene-1-sulfonamide
(1)
QOY : 5-chloro-2-methoxy-N-([1,2,4]triazolo[1,5-a]pyridin-8-yl)benzene-1-sulfonamide
(1)
SO4 : SULFATE ION
(1)
TYR : TYROSINE
(1)
Function and Biology
EC number / name
(1)
3.1.31.1 : Micrococcal nuclease
(11)
Biological function
(2)
nuclease activity
(3)
nucleic acid binding
(3)
Sequence and Structure classification
SCOP fold
(1)
SH3-like barrel
(1)
SCOP family
(1)
Tudor domain
(1)
CATH class
(1)
Mainly Beta
(9)
CATH topology
(2)
SH3 type barrels.
(8)
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(7)
Pfam accession / name
(2)
PF00565 : SNase
(10)
PF00567 : TUDOR
(8)
Experimental Information
Diffraction protocol
(2)
Single wavelength
(9)
MAD
(1)
Diffraction radiation source type
(3)
Synchrotron
(6)
Liquid anode
(2)
Rotating anode
(2)
Diffraction source
(6)
APS BEAMLINE 22-ID
(3)
BRUKER METALJET
(2)
RIGAKU FR-E SUPERBRIGHT
(2)
APS BEAMLINE 21-ID-D
(1)
DIAMOND BEAMLINE I04
(1)
SPRING-8 BEAMLINE BL12B2
(1)
Synchrotron site
(3)
APS
(4)
Diamond
(1)
SPring-8
(1)
Diffraction detector type
(3)
CCD
(6)
Pixel
(3)
Image plate
(1)
Refinement software
(3)
REFMAC
(8)
CNS
(1)
PHENIX
(1)
NMR
NMR software packages
(5)
CYANA
(1)
KUJIRA
(1)
NMRPipe
(1)
NMRView
(1)
XwinNMR
(1)
NMR Field Strength
700.0 - 800
(1)
800.0 - 900
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
Entries 1 to 10 of 11
Select all entries on this page
Crystal structure of human SND1 extended Tudor domain in complex with a symmetrically dimethylated E2F peptide
Tallant C, Savitsky P, Moehlenbrink J, Chan C, Nunez-Alonso G, Siejka P, Sorrell FJ, von Delft F, Arrowsmith CH, Edwards AM, Bountra C, Fedorov O, La Thangue NB, Knapp S, Structural Genomics Consortium (SGC)
To be published
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Transcription factor E2F1 and Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-169517 (Preferred)
search this ID
Crystal structure of SND1 in complex with C-26-A6
Kang Y
Nat Cancer
(2022)
[PMID: 35121987 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-181614 (Preferred)
search this ID

Crystal structure of SND1 in complex with C-26-A2
Kang Y
Nat Cancer
(2022)
[PMID: 35121987 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-181614 (Preferred)
search this ID

Crystal structure of a truncated human Tudor-SN
Li CL
Nucleic Acids Res
(2008)
[PMID: 18453631 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Bound ligands:
CIT
Assembly name:
Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-181614 (Preferred)
search this ID

Crystal structure of human P100 Tudor domain: Large fragment
Shah N, Zhao M, Cheng C, Xu H, Yang J, Silvennoinen O, Liu ZJ, Wang BC, Southeast Collaboratory for Structural Genomics (SECSG)
To be published
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-181617 (Preferred)
search this ID

Crystal structure of human P100 tudor domain
Shaw N, Zhao M, Cheng C, Xu H, Yang J, Silvennoinen O, Rao Z, Wang BC, Liu ZJ
To be published
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-181615 (Preferred)
search this ID

Structure of human SND1 extended tudor domain in complex with the symmetrically dimethylated arginine PIWIL1 peptide R14me2s
Lam R, Liu K, Guo YH, Bian CB, Xu C, MacKenzie F, Bountra C, Weigelt J, Arrowsmith CH, Edwards AM, Bochkarev A, Min J, Structural Genomics Consortium (SGC)
Proc Natl Acad Sci U S A
(2010)
[PMID: 20937909 ]
Source organisms: Synthetic construct, Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Staphylococcal nuclease domain-containing protein 1 and peptide
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-163864 (Preferred)
search this ID

Solution structure of the TUDOR domain of Staphylococcal nuclease domain-containing protein 1
Dang W, Muto Y, Inoue M, Kigawa T, Shirouzu M, Terada T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-181614 (Preferred)
search this ID

The Structure of MTDH-SND1 Complex Reveals Novel Cancer-Promoting Interactions
Guo F, Stanevich V, Wan L, Satyshur K, Kang Y, Xing Y
Cell Rep
(2014)
[PMID: 25242325 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Protein LYRIC and Staphylococcal nuclease domain-containing protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-181616 (Preferred)
search this ID
Structure of human SND1 extended tudor domain in complex with the symmetrically dimethylated arginine PIWIL1 peptide R4me2s
Lam R, Liu K, Guo YH, Bian CB, Xu C, MacKenzie F, Bountra C, Weigelt J, Arrowsmith CH, Edwards AM, Bochkarev A, Min J, Structural Genomics Consortium (SGC)
Proc Natl Acad Sci U S A
(2010)
[PMID: 20937909 ]
Source organisms: synthetic construct , Homo sapiens
Assembly composition: protein/protein complex
Bound ligands:
CL
Assembly name:
Staphylococcal nuclease domain-containing protein 1 and peptide
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-163862 (Preferred)
search this ID

Entries 1 to 10 of 11