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Entry Information
Entry status
(1)
Experimental methods
(1)
X-ray diffraction
(11)
Authors
(28)
Schellenberg MJ
(10)
Tumbale P
(10)
Williams RS
(10)
Tumbale PS
(9)
Fairweather E
(6)
Krahn J
(6)
Little JN
(6)
London RE
(6)
Mueller GA
(6)
Waddell I
(6)
Watson M
(6)
Kunkel TA
(4)
Williams JS
(4)
Becherel OJ
(1)
Chen J
(1)
Cherry AL
(1)
Epe B
(1)
Fusser M
(1)
Gueven N
(1)
Jakob B
(1)
Katyal S
(1)
Kijas AW
(1)
Lavin MF
(1)
McKinnon PJ
(1)
Peng C
(1)
Smerdon SJ
(1)
Taucher-Scholz G
(1)
Tumbale PP
(1)
Homo / hetero assembly
(2)
hetero
(10)
homo
(1)
Assembly composition
(3)
DNA/DNA/RNA hybrid/protein complex
(8)
DNA/protein complex
(2)
protein structure
(1)
Assembly polymer count
(3)
trimer
(9)
hexamer
(1)
monomer
(1)
Resolution distribution
1.5 - 2
(7)
2.0 - 2.5
(2)
2.5 - 3
(2)
Release year distribution
2005 - 2010
(1)
2010 - 2015
(5)
2015 - 2020
(6)
Journal
(3)
EMBO J
(6)
Nature
(4)
Nucleic Acids Res
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(11)
Organism name
(1)
Homo sapiens
(11)
Molecule name
(3)
Aprataxin
(11)
FHA-HIT
(11)
Forkhead-associated domain histidine triad-like protein
(11)
Molecule type
(1)
Protein
(11)
Gene names
(2)
APTX
(11)
AXA1
(11)
Interacting Molecules
(8)
DNA (5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3')
(4)
DNA/RNA (5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3')
(4)
5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3'
(3)
5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3'
(3)
5'-D(P*GP*TP*TP*CP*TP*AP*GP*AP*AP*C)-3'
(1)
DNA (5'-D(*AP*AP*CP*AP*GP*C)-3')
(1)
DNA (5'-D(P*GP*TP*TP*CP*TP*AP*GP*AP*AP*C)-3')
(1)
DNA/RNA (5'-R(P*G)-D(P*TP*TP*CP*TP*AP*TP*AP*TP*AP*TP*AP*GP*AP*AP*CP*GP*CP*TP*GP*TP*T)-3')
(1)
Interacting ligands
(6)
ZN : ZINC ION
(10)
AMP : ADENOSINE MONOPHOSPHATE
(9)
BME : BETA-MERCAPTOETHANOL
(5)
NA : SODIUM ION
(4)
GOL : GLYCEROL
(2)
V5A : adenosine-5'-vanadate
(1)
Function and Biology
EC number / name
(2)
3.6.1.71 : Adenosine-5'-diphospho-5'-(DNA) diphosphatase
(11)
3.6.1.72 : DNA-3'-diphospho-5'-guanosine diphosphatase
(11)
Biological function
(1)
catalytic activity
(10)
Sequence and Structure classification
CATH class
(2)
Alpha Beta
(10)
Mainly Beta
(1)
CATH topology
(2)
HIT family, subunit A
(10)
Tumour Suppressor Smad4
(1)
Pfam accession / name
(3)
PF11969 : DcpS_C
(10)
PF16278 : zf-C2HE
(10)
PF17913 : FHA_2
(1)
Experimental Information
Diffraction protocol
(1)
Single wavelength
(11)
Diffraction radiation source type
(2)
Synchrotron
(10)
Rotating anode
(1)
Diffraction source
(2)
APS BEAMLINE 22-ID
(10)
RIGAKU
(1)
Synchrotron site
(1)
APS
(10)
Diffraction detector type
(2)
CCD
(10)
Image plate
(1)
Refinement software
(2)
PHENIX
(10)
REFMAC
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
Entries 1 to 10 of 11
Select all entries on this page
Human Aprataxin (Aptx) H201Q bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J
(2018)
[PMID: 29934293 ]
Source organism: Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113211 (Preferred)
search this ID

Human Aprataxin (Aptx) V263G bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J
(2018)
[PMID: 29934293 ]
Source organism: Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113213 (Preferred)
search this ID

Human Aprataxin (Aptx) bound to nicked RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PP, Williams RS
EMBO J
(2018)
[PMID: 29934293 ]
Source organism: Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113209 (Preferred)
search this ID
Human Aprataxin (Aptx) L248M bound to DNA, AMP and Zn product
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J
(2018)
[PMID: 29934293 ]
Source organism: Homo sapiens
Assembly composition: DNA/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-119713 (Preferred)
search this ID

Human Aprataxin (Aptx) S242N bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J
(2018)
[PMID: 29934293 ]
Source organism: Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113212 (Preferred)
search this ID

Human Aprataxin (Aptx) bound to RNA-DNA, AMP, and Zn - product complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature
(2014)
[PMID: 24362567 ]
Source organisms: Synthetic construct, Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113159 (Preferred)
search this ID
Human Aprataxin (Aptx) bound to RNA-DNA and Zn - adenosine vanadate transition state mimic complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature
(2014)
[PMID: 24362567 ]
Source organisms: Synthetic construct, Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113160 (Preferred)
search this ID
Human Aprataxin (Aptx) bound to DNA, AMP, and Zn - product complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature
(2014)
[PMID: 24362567 ]
Source organisms: Synthetic construct, Homo sapiens
Assembly composition: DNA/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-117870 (Preferred)
search this ID
Human Aprataxin (Aptx) AOA1 variant K197Q bound to RNA-DNA, AMP, and Zn - product complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature
(2014)
[PMID: 24362567 ]
Source organisms: Synthetic construct, Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113161 (Preferred)
search this ID

Human Aprataxin (Aptx) R199H bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Williams RS, Tumbale PS
EMBO J
(2018)
[PMID: 29934293 ]
Source organism: Homo sapiens
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Assembly name:
Aprataxin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113210 (Preferred)
search this ID

Entries 1 to 10 of 11