Uniprot accession / id : Q7TQC5  OR   Uniprot accession / id : Q7Z2E3  OR   Uniprot accession / id : C9J8U3
 
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Entry Information
Entry status  (1)
REL
(11)
 
Experimental methods  (1)
X-ray diffraction
(11)
 
Authors  (28)
Schellenberg MJ
(10)
Tumbale P
(10)
Williams RS
(10)
Tumbale PS
(9)
Fairweather E
(6)
Krahn J
(6)
Little JN
(6)
London RE
(6)
Mueller GA
(6)
Waddell I
(6)
Watson M
(6)
Kunkel TA
(4)
Williams JS
(4)
Becherel OJ
(1)
Chen J
(1)
Cherry AL
(1)
Epe B
(1)
Fusser M
(1)
Gueven N
(1)
Jakob B
(1)
Katyal S
(1)
Kijas AW
(1)
Lavin MF
(1)
McKinnon PJ
(1)
Peng C
(1)
Smerdon SJ
(1)
Taucher-Scholz G
(1)
Tumbale PP
(1)
 
Homo / hetero assembly  (2)
hetero
(10)
homo
(1)
 
Assembly composition  (3)
DNA/DNA/RNA hybrid/protein complex
(8)
DNA/protein complex
(2)
protein structure
(1)
 
Assembly polymer count  (3)
trimer
(9)
hexamer
(1)
monomer
(1)
 
Resolution distribution
1.5 - 2
(7)
2.0 - 2.5
(2)
2.5 - 3
(2)
 
Release year distribution
2005 - 2010
(1)
2010 - 2015
(5)
2015 - 2020
(6)
 
Journal  (3)
EMBO J
(6)
Nature
(4)
Nucleic Acids Res
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(11)
 
Organism name  (1)
Homo sapiens
(11)
 
Molecule name  (3)
Aprataxin
(11)
FHA-HIT
(11)
Forkhead-associated domain histidine triad-like protein
(11)
 
Molecule type  (1)
Protein
(11)
 
Gene names  (2)
APTX
(11)
AXA1
(11)
 
Interacting Molecules  (8)
DNA (5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3')
(4)
DNA/RNA (5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3')
(4)
5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3'
(3)
5'-R(P*G)-D(P*TP*TP*AP*TP*GP*AP*TP*TP*C)-3'
(3)
5'-D(P*GP*TP*TP*CP*TP*AP*GP*AP*AP*C)-3'
(1)
DNA (5'-D(*AP*AP*CP*AP*GP*C)-3')
(1)
DNA (5'-D(P*GP*TP*TP*CP*TP*AP*GP*AP*AP*C)-3')
(1)
DNA/RNA (5'-R(P*G)-D(P*TP*TP*CP*TP*AP*TP*AP*TP*AP*TP*AP*GP*AP*AP*CP*GP*CP*TP*GP*TP*T)-3')
(1)
 
Interacting ligands  (6)
ZN : ZINC ION
(10)
AMP : ADENOSINE MONOPHOSPHATE
(9)
BME : BETA-MERCAPTOETHANOL
(5)
NA : SODIUM ION
(4)
GOL : GLYCEROL
(2)
V5A : adenosine-5'-vanadate
(1)
 
Function and Biology
EC number / name  (2)
3.6.1.71 : Adenosine-5'-diphospho-5'-(DNA) diphosphatase
(11)
3.6.1.72 : DNA-3'-diphospho-5'-guanosine diphosphatase
(11)
 
Biological function  (1)
catalytic activity
(10)
 
Sequence and Structure classification
CATH class  (2)
Alpha Beta
(10)
Mainly Beta
(1)
 
CATH topology  (2)
HIT family, subunit A
(10)
Tumour Suppressor Smad4
(1)
 
Pfam accession / name  (3)
PF11969 : DcpS_C
(10)
PF16278 : zf-C2HE
(10)
PF17913 : FHA_2
(1)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(11)
 
Diffraction radiation source type  (2)
Synchrotron
(10)
Rotating anode
(1)
 
Diffraction source  (2)
APS BEAMLINE 22-ID
(10)
RIGAKU
(1)
 
Synchrotron site  (1)
APS
(10)
 
Diffraction detector type  (2)
CCD
(10)
Image plate
(1)
 
Refinement software  (2)
PHENIX
(10)
REFMAC
(1)
 
Representative Structures
Representative Structures
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30%
Entries 1 to 10 of 11
Entries 1 to 10 of 11
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Human Aprataxin (Aptx) H201Q bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J (2018) [PMID: 29934293  ]
Source organism: Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: AMP    GOL    ZN    AMP    BME    NA    ZN    NA   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113211 (Preferred)   search this ID
PDBe-KB: Q7Z2E3   
X-ray diffraction
1.65Å resolution
Released: 4 Jul 2018
Model geometry
Fit model/data
6cvq
6cvq
6cvq
Human Aprataxin (Aptx) V263G bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J (2018) [PMID: 29934293  ]
Source organism: Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: AMP    ZN    AMP    ZN   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113213 (Preferred)   search this ID
PDBe-KB: Q7Z2E3   
X-ray diffraction
2.941Å resolution
Released: 4 Jul 2018
Model geometry
Fit model/data
6cvt
6cvt
6cvt
Human Aprataxin (Aptx) bound to nicked RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PP, Williams RS
EMBO J (2018) [PMID: 29934293  ]
Source organism: Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: AMP    ZN    AMP    BME    ZN   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113209 (Preferred)   search this ID
PDBe-KB: Q7Z2E3    Q7Z2E3   
X-ray diffraction
2.4Å resolution
Released: 29 Aug 2018
Model geometry
Fit model/data
6cvo
6cvo
6cvo
Human Aprataxin (Aptx) L248M bound to DNA, AMP and Zn product
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J (2018) [PMID: 29934293  ]
Source organism: Homo sapiens  
Assembly composition: DNA/protein complex
Bound ligands: AMP    ZN    AMP    BME    ZN   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-119713 (Preferred)   search this ID
PDBe-KB: Q7Z2E3   
X-ray diffraction
2.11Å resolution
Released: 4 Jul 2018
Model geometry
Fit model/data
6cvs
6cvs
6cvs
Human Aprataxin (Aptx) S242N bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Tumbale PS, Williams RS
EMBO J (2018) [PMID: 29934293  ]
Source organism: Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: AMP    ZN    AMP    ZN   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113212 (Preferred)   search this ID
PDBe-KB: Q7Z2E3   
X-ray diffraction
1.88Å resolution
Released: 4 Jul 2018
Model geometry
Fit model/data
6cvr
6cvr
6cvr
Human Aprataxin (Aptx) bound to RNA-DNA, AMP, and Zn - product complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature (2014) [PMID: 24362567  ]
Source organisms: Synthetic construct, Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: K    AMP    K    ZN    AMP    BME    NA    ZN    NA   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113159 (Preferred)   search this ID
PDBe-KB: Q7Z2E3    Q7Z2E3   
X-ray diffraction
1.944Å resolution
Released: 18 Dec 2013
Model geometry
Fit model/data
4ndf
4ndf
4ndf
Human Aprataxin (Aptx) bound to RNA-DNA and Zn - adenosine vanadate transition state mimic complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature (2014) [PMID: 24362567  ]
Source organisms: Synthetic construct, Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: ZN    V5A    ZN    V5A   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113160 (Preferred)   search this ID
PDBe-KB: Q7Z2E3    Q7Z2E3   
X-ray diffraction
2.541Å resolution
Released: 18 Dec 2013
Model geometry
Fit model/data
4ndg
4ndg
4ndg
Human Aprataxin (Aptx) bound to DNA, AMP, and Zn - product complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature (2014) [PMID: 24362567  ]
Source organisms: Synthetic construct, Homo sapiens  
Assembly composition: DNA/protein complex
Bound ligands: AMP    ZN    AMP    ZN   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-117870 (Preferred)   search this ID
PDBe-KB: Q7Z2E3    Q7Z2E3   
X-ray diffraction
1.848Å resolution
Released: 18 Dec 2013
Model geometry
Fit model/data
4ndh
4ndh
4ndh
Human Aprataxin (Aptx) AOA1 variant K197Q bound to RNA-DNA, AMP, and Zn - product complex
Schellenberg MJ, Tumbale PS, Williams RS
Nature (2014) [PMID: 24362567  ]
Source organisms: Synthetic construct, Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: K    AMP    K    GOL    ZN    AMP    BME    NA    ZN    NA   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113161 (Preferred)   search this ID
PDBe-KB: Q7Z2E3   
X-ray diffraction
1.9Å resolution
Released: 18 Dec 2013
Model geometry
Fit model/data
4ndi
4ndi
4ndi
Human Aprataxin (Aptx) R199H bound to RNA-DNA, AMP and Zn product complex
Schellenberg MJ, Williams RS, Tumbale PS
EMBO J (2018) [PMID: 29934293  ]
Source organism: Homo sapiens  
Assembly composition: DNA/DNA/RNA hybrid/protein complex
Bound ligands: AMP    ZN    AMP    NA    ZN    NA   
Assembly name: Aprataxin and DNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-113210 (Preferred)   search this ID
PDBe-KB: Q7Z2E3   
X-ray diffraction
1.999Å resolution
Released: 4 Jul 2018
Model geometry
Fit model/data
6cvp
6cvp
6cvp
Entries 1 to 10 of 11
Entries 1 to 10 of 11