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X-ray diffraction
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Authors
(39)
Qin J
(6)
Wu C
(6)
Boggon TJ
(3)
Calderwood DA
(3)
Chen W
(3)
Chiswell BP
(3)
Li L
(3)
Lin L
(3)
Sun K
(3)
Vaynberg J
(3)
Velyvis A
(3)
Wei Z
(3)
Xie Y
(3)
Yang H
(3)
Yu C
(3)
Zhang T
(3)
Cong Y
(2)
Fukuda K
(2)
Hayashi F
(2)
Jakoncic J
(2)
Lu F
(2)
Qin XR
(2)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(2)
Stiegler AL
(2)
Stojanoff V
(2)
Vinogradova O
(2)
Yang Y
(2)
Yokoyama S
(2)
Bialkowska K
(1)
Chen K
(1)
Chen Y
(1)
Fukuda T
(1)
Murphy JW
(1)
Nagashima T
(1)
Ng L
(1)
Plow EF
(1)
Tu Y
(1)
Zhang R
(1)
Zhang Y
(1)
Homo / hetero assembly
(2)
hetero
(9)
homo
(5)
Assembly composition
(2)
protein/protein complex
(9)
protein structure
(5)
Assembly polymer count
(2)
dimer
(9)
monomer
(5)
Resolution distribution
1.0 - 1.5
(2)
1.5 - 2
(2)
2.0 - 2.5
(1)
3.0 - 3.5
(2)
Release year distribution
2000 - 2005
(4)
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(5)
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(2)
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(1)
2020 - 2025
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(7)
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Macromolecules
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Eukaryota
(14)
Organism name
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Homo sapiens
(14)
Molecule name
(4)
LIM and senescent cell antigen-like-containing domain protein 1
(14)
PINCH-1
(14)
Particularly interesting new Cys-His protein 1
(14)
Renal carcinoma antigen NY-REN-48
(14)
Molecule type
(1)
Protein
(14)
Gene names
(3)
LIMS1
(14)
PINCH
(14)
PINCH1
(14)
Interacting Molecules
(3)
Ras suppressor protein 1
(4)
Scaffold protein ILK
(4)
Cytoplasmic protein NCK2
(1)
Interacting ligands
(5)
ZN : ZINC ION
(14)
PO4 : PHOSPHATE ION
(3)
IOD : IODIDE ION
(2)
MLI : MALONATE ION
(1)
PGE : TRIETHYLENE GLYCOL
(1)
Sequence and Structure classification
SCOP fold
(1)
Glucocorticoid receptor-like (DNA-binding domain)
(5)
SCOP family
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LIM domain
(5)
CATH class
(1)
Mainly Beta
(9)
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(1)
Cysteine Rich Protein
(9)
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(1)
PF00412 : LIM
(14)
Experimental Information
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(9)
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(2)
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(6)
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(1)
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(5)
SSRF BEAMLINE BL18U1
(3)
APS BEAMLINE 19-BM
(1)
APS BEAMLINE 24-ID-C
(1)
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RIGAKU MICROMAX-007
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NMR Field Strength
400.0 - 500
(3)
500.0 - 600
(5)
600.0 - 700
(2)
700.0 - 800
(2)
800.0 - 900
(2)
900.0 - 1000
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
Entries 1 to 10 of 14
Select all entries on this page
Crystal structure of Ras suppressor-1 in complex with PINCH-1 LIM4-5 domains
Fukuda K, Qin J
J Biol Chem
(2021)
[PMID: 33891945 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1 and Ras suppressor protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155701 (Preferred)
search this ID
Crystal structure of Rsu1/PINCH1_LIM45C complex
Yang H, Wei Z, Cong Y
Elife
(2021)
[PMID: 33587032 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1 and Ras suppressor protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155701 (Preferred)
search this ID
Crystal structure of Rsu1/PINCH1_LIM5C complex
Yang H, Wei Z, Cong Y
Elife
(2021)
[PMID: 33587032 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1 and Ras suppressor protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155701 (Preferred)
search this ID
Crystal structure of Rsu1/PINCH1_LIM45C complex
Yang H, Wei Z, Yu C
Elife
(2021)
[PMID: 33587032 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1 and Ras suppressor protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155701 (Preferred)
search this ID
Lim5 domain of PINCH1 protein
Qin J, Vaynberg J
Nat Commun
(2018)
[PMID: 30367047 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155699 (Preferred)
search this ID

4th LIM domain of PINCH protein
Velyvis A, Vaynberg J, Vinogradova O, Zhang Y, Wu C, Qin J
Nat Struct Biol
(2003)
[PMID: 12794636 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155699 (Preferred)
search this ID

1ST LIM DOMAIN OF PINCH PROTEIN
Velyvis A, Yang Y, Wu C, Qin J
J Biol Chem
(2001)
[PMID: 11078733 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155699 (Preferred)
search this ID

Solution structure of ILK-PINCH complex
Qin J
To be published
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1 and Scaffold protein ILK
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155700 (Preferred)
search this ID
Solution structure of the third LIM domain of particularly interesting new Cys-His protein
Qin XR, Nagashima T, Hayashi F, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155699 (Preferred)
search this ID

NMR structure of the complex between Nck-2 SH3 domain and PINCH-1 LIM4 domain
Vaynberg J, Fukuda T, Vinogradova O, Velyvis A, Ng L, Wu C, Qin J
Mol Cell
(2005)
[PMID: 15721255 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
LIM and senescent cell antigen-like-containing domain protein 1 and Cytoplasmic protein NCK2
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-129044 (Preferred)
search this ID
Entries 1 to 10 of 14