Uniprot accession / id : Q99K70  OR   Uniprot accession / id : Q9HB90
 
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Entry Information
Entry status  (1)
REL
(20)
 
Experimental methods  (2)
Electron Microscopy
(15)
X-ray diffraction
(5)
 
Authors  (97)
Hurley JH
(7)
Sabatini DM
(7)
Rogala KB
(6)
Shen K
(5)
Yu Z
(5)
Anandapadamanaban M
(4)
Berndt A
(4)
Chou HT
(4)
Fromm SA
(4)
Huber LA
(4)
Johnson CM
(4)
Kaufman J
(4)
Masson GR
(4)
Perisic O
(4)
Santhanam B
(4)
Williams RL
(4)
de Araujo MEG
(4)
Ballabio A
(3)
Cui Z
(3)
Egri SB
(3)
Esposito A
(3)
Hurley J
(3)
Lawrence RE
(3)
Monfregola J
(3)
Napolitano G
(3)
Ouch C
(3)
Song K
(3)
Xu C
(3)
Brignole EJ
(2)
Huang RK
(2)
Yokom AL
(2)
Zoncu R
(2)
Abu-Remaileh M
(1)
Arrowsmith CH
(1)
Bianchi LF
(1)
Bochkarev A
(1)
Bomaliyamu A
(1)
Bottino AMS
(1)
Bountra C
(1)
Chantranupong L
(1)
Choe A
(1)
Condon KJ
(1)
Crombet L
(1)
Dueholm R
(1)
Dunzendorfer-Matt T
(1)
Edwards AM
(1)
Fils AP
(1)
Fu Y
(1)
Furnrohr BG
(1)
Fürnrohr BG
(1)
Gu X
(1)
Guan X
(1)
Hong C
(1)
Jansen RM
(1)
Kedir JF
(1)
Kim DJ
(1)
Kitamura A
(1)
Kremser L
(1)
Laqtom NN
(1)
Leary D
(1)
Lechner S
(1)
Li S
(1)
Lim CY
(1)
Lindner HH
(1)
Nada S
(1)
Nakagawa A
(1)
Nakai M
(1)
Nakai T
(1)
Nakatsumi H
(1)
Nakayama KI
(1)
Naschberger A
(1)
Nedyalkova L
(1)
Niehaus A
(1)
Offterdinger M
(1)
Ogawa A
(1)
Okada M
(1)
Overwijn D
(1)
Park H
(1)
Peruzzo R
(1)
Samelson AJ
(1)
Scheffzek K
(1)
Shivalingaiah G
(1)
Standley DM
(1)
Stasyk T
(1)
Structural Genomics Consortium (SGC)
(1)
Tempel W
(1)
Thelen AM
(1)
Tong Y
(1)
Valenstein ML
(1)
Weigelt J
(1)
Welti S
(1)
Yamashita E
(1)
Yonehara R
(1)
Young LN
(1)
Yu ZH
(1)
Zhong N
(1)
Zhou SX
(1)
 
Homo / hetero assembly  (2)
hetero
(19)
homo
(1)
 
Assembly composition  (2)
protein/protein complex
(19)
protein structure
(1)
 
Assembly polymer count  (12)
decamer
(4)
octamer
(3)
dimer
(2)
heptamer
(2)
nonamer
(2)
36-mer
(1)
dodecamer
(1)
heptadecamer
(1)
hexadecamer
(1)
octadecamer
(1)
pentamer
(1)
tetramer
(1)
 
Resolution distribution
1.0 - 1.5
(1)
2.0 - 2.5
(2)
2.5 - 3
(3)
3.0 - 3.5
(5)
3.5 - 4
(7)
5.0 - 5.5
(1)
6.0 - 6.5
(1)
 
Release year distribution
2005 - 2010
(1)
2010 - 2015
(1)
2015 - 2020
(12)
2020 - 2025
(9)
 
Journal  (8)
Science
(7)
Nature
(4)
Mol Cell
(3)
Nat Struct Mol Biol
(2)
Cell
(1)
Nat Commun
(1)
Sci Adv
(1)
To be published
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(20)
 
Organism name  (2)
Homo sapiens
(19)
Mus musculus
(1)
 
Molecule name  (5)
GTPase-interacting protein 2
(20)
Rag C
(20)
RagC
(20)
Ras-related GTP-binding protein C
(20)
TIB929
(20)
 
Molecule type  (1)
Protein
(20)
 
Gene names  (2)
RRAGC
(19)
Rragc
(1)
 
Interacting Molecules  (19)
Ras-related GTP-binding protein A
(19)
Ragulator complex protein LAMTOR1
(14)
Ragulator complex protein LAMTOR2
(14)
Ragulator complex protein LAMTOR3
(14)
Ragulator complex protein LAMTOR4
(14)
Ragulator complex protein LAMTOR5
(14)
Regulatory-associated protein of mTOR
(6)
GATOR1 complex protein DEPDC5
(4)
GATOR1 complex protein NPRL2
(4)
GATOR1 complex protein NPRL3
(4)
Serine/threonine-protein kinase mTOR
(4)
Target of rapamycin complex subunit LST8
(4)
Folliculin
(3)
Folliculin-interacting protein 2
(3)
Neutral amino acid transporter 9
(3)
Transcription factor EB
(3)
Glutathione S-transferase class-mu 26 kDa isozyme
(1)
Proline-rich AKT1 substrate 1
(1)
Ras-related GTP-binding protein C
(1)
 
Interacting ligands  (9)
GDP : GUANOSINE-5'-DIPHOSPHATE
(10)
MG : MAGNESIUM ION
(3)
AF3 : ALUMINUM FLUORIDE
(2)
GNP : PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
(2)
L8S : 9-{5-O-[(S)-hydroxy{[(R)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]-alpha-L-arabinofuranosyl}-3,9-dihydro-1H-purine-2,6-dione
(2)
ACT : ACETATE ION
(1)
BEF : BERYLLIUM TRIFLUORIDE ION
(1)
CZC : [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(oxidanylidene)-3~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate
(1)
U3J : xanthosine diphosphate
(1)
 
Function and Biology
Biological function  (12)
GTP binding
(20)
GDP binding
(17)
GTPase activity
(17)
GTPase binding
(17)
enzyme-substrate adaptor activity
(17)
hydrolase activity
(17)
magnesium ion binding
(17)
molecular adaptor activity
(17)
nucleotide binding
(17)
protein binding
(17)
protein heterodimerization activity
(17)
protein-membrane adaptor activity
(17)
 
Biological process  (16)
DNA-templated transcription
(17)
RNA splicing
(17)
apoptotic process
(17)
cellular response to amino acid starvation
(17)
cellular response to amino acid stimulus
(17)
cellular response to nutrient levels
(17)
cellular response to starvation
(17)
negative regulation of autophagy
(17)
positive regulation of TORC1 signaling
(17)
protein localization
(17)
protein localization to lysosome
(17)
protein localization to membrane
(17)
regulation of TOR signaling
(17)
regulation of TORC1 signaling
(17)
response to amino acid
(17)
small GTPase-mediated signal transduction
(17)
 
Biological cell component  (10)
FNIP-folliculin RagC/D GAP
(17)
Gtr1-Gtr2 GTPase complex
(17)
cytoplasm
(17)
cytosol
(17)
intracellular membrane-bounded organelle
(17)
lysosomal membrane
(17)
lysosome
(17)
membrane
(17)
nucleoplasm
(17)
nucleus
(17)
 
Sequence and Structure classification
CATH class  (1)
Alpha Beta
(3)
 
CATH topology  (2)
Beta-Lactamase
(2)
Rossmann fold
(1)
 
Pfam accession / name  (1)
PF04670 : Gtr1_RagA
(18)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(5)
 
Diffraction radiation source type  (1)
Synchrotron
(5)
 
Diffraction source  (5)
APS BEAMLINE 19-ID
(1)
ESRF BEAMLINE ID23-1
(1)
ESRF BEAMLINE ID30B
(1)
ESRF BEAMLINE MASSIF-3
(1)
SPRING-8 BEAMLINE BL44XU
(1)
 
Synchrotron site  (3)
ESRF
(3)
APS
(1)
SPring-8
(1)
 
Diffraction detector type  (2)
Pixel
(3)
CCD
(2)
 
Refinement software  (4)
PHENIX
(12)
REFMAC
(4)
phenix.real_space_refine
(3)
BUSTER
(1)
 
EM microscope model  (2)
FEI TITAN KRIOS
(14)
FEI TALOS ARCTICA
(1)
 
EM detector name  (5)
GATAN K2 SUMMIT (4k x 4k)
(5)
GATAN K3 BIOQUANTUM (6k x 4k)
(5)
GATAN K3 (6k x 4k)
(3)
GATAN K2 BASE (4k x 4k)
(1)
GATAN K2 QUANTUM (4k x 4k)
(1)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 20
Entries 1 to 10 of 20
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Cryo-EM Structure of the Lysosomal Folliculin Complex (FLCN-FNIP2-RagA-RagC-Ragulator)
Fromm SA, Young LN, Hurley JH
Science (2019) [PMID: 31672913  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: GDP    L8S    GDP    L8S   
Assembly name: Ragulator complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-128944 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q6IAA8    Q9UHA4    Q7L523    Q8NFG4    Q9P278    (view 3 more)
Electron Microscopy
3.6Å resolution
Released: 6 Nov 2019
Model geometry
Fit model/data
Data not analysed
6nzd
6nzd
6nzd
Cryo-EM structure of GATOR1-RAG
Shen K, Huang RK, Brignole EJ, Yu Z, Sabatini DM
Nature (2018) [PMID: 29590090  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: GNP    GNP   
Assembly name: GATOR1 complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-130841 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q7L523    O75140    Q8WTW4    Q12980   
Electron Microscopy
4Å resolution
Released: 28 Mar 2018
Model geometry
Fit model/data
Data not analysed
6ces
6ces
6ces
Crystal structure of human heteroheptameric complex
Yonehara R, Nada S, Nakai T, Nakai M, Kitamura A, Ogawa A, Nakatsumi H, Nakayama KI, Li S, Standley DM, Yamashita E, Nakagawa A, Okada M
Nat Commun (2017) [PMID: 29158492  ]
Assembly composition: protein/protein complex
Bound ligands: ACT    NA    ACT    NA   
Assembly name: Ragulator complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-128945 (Preferred)   search this ID
PDBe-KB: Q99K70    Q9UHA4    Q6IAA8    Q7L523    Q9Y2Q5    Q0VGL1    (view 1 more)
X-ray diffraction
2.02Å resolution
Released: 6 Dec 2017
Model geometry
Fit model/data
5x6v
5x6v
5x6v
Crystal structure of RagA-Q66L/RagC-T90N GTPase heterodimer complex
Anandapadamanaban M, Masson GR, Perisic O, Kaufman J, Williams RL
Science (2019) [PMID: 31601764  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: GDP    MG    GTP    9JE    GDP    GTP    MG   
Assembly name: RAG guanosine triphosphatase complex, RAGA-RAGC variant (Preferred)   search this complex
PDBe complex ID: PDB-CPX-181631 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q7L523   
X-ray diffraction
2.63Å resolution
Released: 16 Oct 2019
Model geometry
Fit model/data
6s6a
6s6a
6s6a
The crystal structure of the human LAMTOR-RagA CTD-RagC CTD complex
Scheffzek K, Naschberger A
Science (2017) [PMID: 28935770  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Assembly name: Ragulator complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-128946 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q9UHA4    Q6IAA8    Q7L523    Q9Y2Q5    Q0VGL1    (view 1 more)
X-ray diffraction
2.898Å resolution
Released: 4 Oct 2017
Model geometry
Fit model/data
6ehr
6ehr
6ehr
Active FLCN GAP complex
Jansen RM, Hurley JH
Sci Adv (2022) [PMID: 36103527  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: BEF    GDP    CZC    BEF    GDP   
Assembly name: Ragulator complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-275950 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q6IAA8    Q9UHA4    Q7L523    Q8NFG4    P08515    (view 5 more)
Electron Microscopy
3.53Å resolution
Released: 28 Sep 2022
Model geometry
Fit model/data
Data not analysed
8dhb
8dhb
8dhb
GATOR1-RAG-RAGULATOR - Dual Complex
Egri SB, Shen K
Mol Cell (2022) [PMID: 35338845  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: GDP    GDP    AF3    AF3   
Assembly name: GATOR1 complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-128949 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q6IAA8    Q9UHA4    Q7L523    O75140    Q8WTW4    (view 4 more)
Electron Microscopy
4Å resolution
Released: 6 Apr 2022
Model geometry
Fit model/data
Data not analysed
7t3c
7t3c
7t3c
GATOR1-RAG-RAGULATOR - GAP Complex
Egri SB, Shen K
Mol Cell (2022) [PMID: 35338845  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: GDP    GDP    AF3    AF3   
Assembly name: Ragulator complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-128939 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q6IAA8    Q9UHA4    Q7L523    O75140    Q8WTW4    (view 4 more)
Electron Microscopy
3.9Å resolution
Released: 6 Apr 2022
Model geometry
Fit model/data
Data not analysed
7t3b
7t3b
7t3b
GATOR1-RAG-RAGULATOR - Inhibitory Complex
Egri SB, Shen K
Mol Cell (2022) [PMID: 35338845  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: GNP    GNP   
Assembly name: Ragulator complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-128939 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q6IAA8    Q9UHA4    Q7L523    O75140    Q8WTW4    (view 4 more)
Electron Microscopy
4Å resolution
Released: 6 Apr 2022
Model geometry
Fit model/data
Data not analysed
7t3a
7t3a
7t3a
Crystal structure of RagA-Q66L-GTP/RagC-S75N-GDP GTPase heterodimer complex
Anandapadamanaban M, Masson GR, Perisic O, Kaufman J, Williams RL
Science (2019) [PMID: 31601764  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: GDP    MG    GTP    9JE    GDP    GTP    MG   
Assembly name: RAG guanosine triphosphatase complex, RAGA-RAGC variant (Preferred)   search this complex
PDBe complex ID: PDB-CPX-181631 (Preferred)   search this ID
PDBe-KB: Q9HB90    Q7L523   
X-ray diffraction
2.5Å resolution
Released: 16 Oct 2019
Model geometry
Fit model/data
6s6d
6s6d
6s6d
Entries 1 to 10 of 20
Entries 1 to 10 of 20