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Entry Information
Entry status
(1)
Experimental methods
(1)
Electron Microscopy
(57)
Authors
(132)
Amunts A
(17)
Beckmann R
(15)
Cheng J
(15)
Aibara S
(12)
Singh V
(12)
Berninghausen O
(9)
Li X
(8)
Bohnsack KE
(7)
Hanitsch E
(7)
Hillen HS
(7)
Itoh Y
(7)
Lavdovskaia E
(7)
Linden A
(7)
Minczuk M
(7)
Modelska A
(7)
Nadler F
(7)
Ramakrishnan V
(7)
Richter-Dennerlein R
(7)
Urlaub H
(7)
Barrientos A
(6)
Buschauer R
(6)
Denk T
(6)
Li Y
(6)
Rorbach J
(6)
Wang M
(6)
Andrell J
(5)
Andréll J
(5)
Ban N
(5)
Filipovska A
(5)
Lee RG
(5)
Leibundgut M
(5)
Lenarcic T
(5)
Lenarčič T
(5)
Rackham O
(5)
Saurer M
(5)
Scaiola A
(5)
Schoenhut T
(5)
Schonhut T
(5)
Schönhut T
(5)
Chandrasekaran V
(4)
Desai N
(4)
Kummer E
(4)
Yang H
(4)
Atanassov I
(3)
Bai XC
(3)
Brown A
(3)
Cipullo M
(3)
Del'Olio S
(3)
Flygaard RK
(3)
Hassan A
(3)
Izumikawa K
(3)
Jaskolowski M
(3)
Kazi R
(3)
Naschberger A
(3)
Nguyen MD
(3)
Nobe Y
(3)
Taoka M
(3)
Whitford PC
(3)
Abdelbagi A
(2)
Agrawal RK
(2)
Andrews B
(2)
Battersby BJ
(2)
Benhalevy D
(2)
Best RB
(2)
Cai Y
(2)
Choi A
(2)
Dent KC
(2)
Dinan A
(2)
Dreos R
(2)
Firth AE
(2)
Garone C
(2)
Gatfield D
(2)
Gopalakrishna S
(2)
Hafner M
(2)
Hallberg BM
(2)
Hällberg BM
(2)
Keshavan P
(2)
Khawaja A
(2)
Kimanius D
(2)
Koripella RK
(2)
Krueger A
(2)
Liu Y
(2)
Lobo V
(2)
Maiti P
(2)
Marks J
(2)
Miller-Fleming L
(2)
Misic J
(2)
Nadimpalli HP
(2)
Nguyen TG
(2)
Palenikova P
(2)
Pellegrino S
(2)
Pirozhkova MA
(2)
Páleníková P
(2)
Rathore S
(2)
Rebelo-Guiomar P
(2)
Richter U
(2)
Risteff P
(2)
Ritter C
(2)
Rogan JF
(2)
Sarshad AA
(2)
More...
Homo / hetero assembly
(1)
hetero
(57)
Assembly composition
(1)
RNA/protein complex
(57)
Assembly polymer count
(23)
94-mer
(6)
55-mer
(5)
56-mer
(5)
52-mer
(4)
57-mer
(4)
58-mer
(4)
83-mer
(3)
92-mer
(3)
93-mer
(3)
51-mer
(2)
53-mer
(2)
54-mer
(2)
60-mer
(2)
86-mer
(2)
91-mer
(2)
30-mer
(1)
46-mer
(1)
49-mer
(1)
62-mer
(1)
63-mer
(1)
85-mer
(1)
90-mer
(1)
96-mer
(1)
Resolution distribution
2.0 - 2.5
(5)
2.5 - 3
(17)
3.0 - 3.5
(23)
3.5 - 4
(6)
4.0 - 4.5
(4)
4.5 - 5
(1)
5.5 - 6
(1)
Release year distribution
2010 - 2015
(1)
2015 - 2020
(13)
2020 - 2025
(52)
2025 - 2030
(1)
Journal
(7)
Nat Commun
(34)
Elife
(8)
Science
(8)
Nat Struct Mol Biol
(3)
Proc Natl Acad Sci U S A
(2)
Nature
(1)
To be published
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(57)
Organism name
(1)
Homo sapiens
(57)
Molecule name
(4)
39S ribosomal protein L18, mitochondrial
(57)
L18mt
(57)
Large ribosomal subunit protein uL18m
(57)
MRP-L18
(57)
Molecule type
(1)
Protein
(57)
Gene names
(2)
HSPC071
(57)
MRPL18
(57)
Interacting Molecules
(147)
Large ribosomal subunit protein bL17m
(57)
Large ribosomal subunit protein bL19m
(57)
Large ribosomal subunit protein bL20m
(57)
Large ribosomal subunit protein bL21m
(57)
Large ribosomal subunit protein bL27m
(57)
Large ribosomal subunit protein bL28m
(57)
Large ribosomal subunit protein bL32m
(57)
Large ribosomal subunit protein bL34m
(57)
Large ribosomal subunit protein bL9m
(57)
Large ribosomal subunit protein mL37
(57)
Large ribosomal subunit protein mL38
(57)
Large ribosomal subunit protein uL13m
(57)
Large ribosomal subunit protein uL14m
(57)
Large ribosomal subunit protein uL15m
(57)
Large ribosomal subunit protein uL16m
(57)
Large ribosomal subunit protein uL22m
(57)
Large ribosomal subunit protein uL23m
(57)
Large ribosomal subunit protein uL24m
(57)
Large ribosomal subunit protein uL29m
(57)
Large ribosomal subunit protein uL2m
(57)
Large ribosomal subunit protein uL30m
(57)
Large ribosomal subunit protein uL3m
(57)
Large ribosomal subunit protein uL4m
(57)
Large ribosomal subunit protein bL33m
(56)
Large ribosomal subunit protein bL35m
(56)
Large ribosomal subunit protein mL39
(56)
Large ribosomal subunit protein mL41
(56)
Large ribosomal subunit protein mL42
(56)
Large ribosomal subunit protein mL43
(56)
Large ribosomal subunit protein mL44
(56)
Large ribosomal subunit protein mL45
(56)
Large ribosomal subunit protein mL49
(56)
Large ribosomal subunit protein mL50
(56)
Large ribosomal subunit protein mL51
(56)
Large ribosomal subunit protein mL52
(56)
Large ribosomal subunit protein mL62
(56)
Large ribosomal subunit protein mL63
(56)
Large ribosomal subunit protein mL64
(56)
Large ribosomal subunit protein mL65
(56)
Large ribosomal subunit protein mL66
(56)
Large ribosomal subunit protein uL10m
(55)
Large ribosomal subunit protein uL11m
(55)
Large ribosomal subunit protein mL48
(54)
Large ribosomal subunit protein mL53
(54)
Large ribosomal subunit protein mL40
(53)
Large ribosomal subunit protein mL46
(53)
Large ribosomal subunit protein mL55
(52)
Large ribosomal subunit protein mL54
(49)
Large ribosomal subunit protein bL36m
(45)
16S ribosomal RNA
(38)
mitochondrial tRNAVal
(27)
Acyl carrier protein, mitochondrial
(26)
Mitochondrial assembly of ribosomal large subunit protein 1
(26)
Mitochondrial ribosome and complex I assembly factor AltMIEF1
(26)
Small ribosomal subunit protein bS16m
(22)
Small ribosomal subunit protein bS18m
(22)
Small ribosomal subunit protein bS1m
(22)
Small ribosomal subunit protein bS6m
(22)
Small ribosomal subunit protein mS22
(22)
Small ribosomal subunit protein mS23
(22)
Small ribosomal subunit protein mS25
(22)
Small ribosomal subunit protein mS26
(22)
Small ribosomal subunit protein mS27
(22)
Small ribosomal subunit protein mS29
(22)
Small ribosomal subunit protein mS31
(22)
Small ribosomal subunit protein mS33
(22)
Small ribosomal subunit protein mS35
(22)
Small ribosomal subunit protein mS37
(22)
Small ribosomal subunit protein mS38
(22)
Small ribosomal subunit protein mS39
(22)
Small ribosomal subunit protein mS40
(22)
Small ribosomal subunit protein uS10m
(22)
Small ribosomal subunit protein uS11m
(22)
Small ribosomal subunit protein uS12m
(22)
Small ribosomal subunit protein uS14m
(22)
Small ribosomal subunit protein uS15m
(22)
Small ribosomal subunit protein uS17m
(22)
Small ribosomal subunit protein uS2m
(22)
Small ribosomal subunit protein uS3m
(22)
Small ribosomal subunit protein uS5m
(22)
Small ribosomal subunit protein uS7m
(22)
Small ribosomal subunit protein uS9m
(22)
Small ribosomal subunit protein mS34
(21)
Small ribosomal subunit protein bS21m
(19)
Large ribosomal subunit protein bL12m
(16)
16S mitochondrial rRNA
(15)
Messenger RNA
(15)
12S mitochondrial rRNA
(14)
5-cytosine rRNA methyltransferase NSUN4
(11)
Transcription termination factor 4, mitochondrial
(11)
mitochondrial Val tRNA
(9)
E-site tRNA
(7)
Large ribosomal subunit protein uL1m
(7)
12S rRNA
(6)
P-site tRNA
(6)
Val tRNA
(6)
mt-tRNAVal
(6)
Quinupristin
(5)
E/E-tRNA
(4)
P/P-tRNA
(4)
More...
Interacting ligands
(1)
K : POTASSIUM ION
(9)
Function and Biology
Biological function
(4)
structural constituent of ribosome
(56)
5S rRNA binding
(54)
RNA binding
(54)
protein binding
(54)
Biological process
(3)
translation
(56)
mitochondrial translation
(54)
rRNA import into mitochondrion
(54)
Biological cell component
(8)
ribosome
(56)
cytoplasm
(54)
extracellular space
(54)
mitochondrial inner membrane
(54)
mitochondrial large ribosomal subunit
(54)
mitochondrial ribosome
(54)
mitochondrion
(54)
ribonucleoprotein complex
(54)
Sequence and Structure classification
CATH class
(1)
Alpha Beta
(3)
CATH topology
(1)
Nucleotidyltransferase; domain 5
(3)
Pfam accession / name
(1)
PF00861 : Ribosomal_L18p
(57)
Experimental Information
Refinement software
(3)
PHENIX
(10)
phenix.real_space_refine
(8)
REFMAC
(1)
EM microscope model
(2)
FEI TITAN KRIOS
(53)
TFS KRIOS
(4)
EM detector name
(6)
GATAN K2 SUMMIT (4k x 4k)
(16)
FEI FALCON II (4k x 4k)
(12)
FEI FALCON III (4k x 4k)
(9)
GATAN K3 (6k x 4k)
(9)
GATAN K3 BIOQUANTUM (6k x 4k)
(9)
FEI FALCON IV (4k x 4k)
(2)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
...
Entries 1 to 10 of 57
Select all entries on this page
39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N
Science
(2023)
[PMID: 37141370 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-218035 (Preferred)
search this ID
55S human mitochondrial ribosome with mtRF1 and P-site tRNA
Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N
Science
(2023)
[PMID: 37141370 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
N
OMU
SAC
Y5P
5F0
ACE
5MC
ACE
2MG
5MU
5MU
MA6
N
SAC
Y5P
1MA
AYA
RSQ
RSQ
1MA
2MG
AYA
B8T
PSU
PSU
MA6
OMG
OMU
PDBe complex ID:
PDB-CPX-218031 (Preferred)
search this ID
Structural insights into unique features of the human mitochondrial ribosome recycling
Sharma MR, Koripella RK, Agrawal RK
Proc Natl Acad Sci U S A
(2019)
[PMID: 30962385 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-289225 (Preferred)
search this ID
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V
Nat Struct Mol Biol
(2017)
[PMID: 28892042 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-289300 (Preferred)
search this ID
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V
Nat Struct Mol Biol
(2017)
[PMID: 28892042 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-289299 (Preferred)
search this ID
Human mitochondrial ribosome in complex with antibiotic tigecycline
Khawaja A, Sing V, Nguyen MD, Rorbach J
To be published
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
OMU
5F0
ACE
5MC
ACE
2MG
5MU
5MU
MA6
1MA
THC
1MA
2MG
B8T
PSU
PSU
MA6
OMG
OMU
THC
Assembly name:
ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-290535 (Preferred)
search this ID
Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
Li X, Wang M, Cheng J
Nat Commun
(2024)
[PMID: 38942792 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Assembly name:
ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-280502 (Preferred)
search this ID
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM
Nat Commun
(2024)
[PMID: 38969660 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Assembly name:
Large ribosomal protein and tRNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-289430 (Preferred)
search this ID
Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA)
Singh V, Itoh Y, Amunts A
Nat Commun
(2024)
[PMID: 38769321 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
OMU
SAC
5F0
5MC
2MG
5MU
5MU
MA6
SAC
1MA
AYA
THC
1MA
2MG
AYA
B8T
PSU
PSU
MA6
OMG
OMU
THC
PDBe complex ID:
PDB-CPX-288636 (Preferred)
search this ID
Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution
Singh V, Itoh Y, Amunts A
Nat Commun
(2024)
[PMID: 38769321 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
OMU
SAC
5F0
ACE
5MC
ACE
2MG
5MU
5MU
MA6
SAC
1MA
AYA
1MA
2MG
AYA
B8T
PSU
PSU
MA6
OMG
OMU
PDBe complex ID:
PDB-CPX-288637 (Preferred)
search this ID
...
Entries 1 to 10 of 57