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Entry Information
Entry status
(1)
Experimental methods
(1)
Electron Microscopy
(118)
Authors
(351)
Klinge S
(24)
Vanden Broeck A
(24)
Beckmann R
(23)
Li Y
(17)
Cheng J
(16)
Gao N
(15)
Li N
(15)
Liang X
(15)
Ma C
(15)
Zhang Y
(15)
Buschauer R
(14)
Denk T
(12)
Natchiar SK
(12)
Becker T
(11)
Chen Y
(11)
Luo S
(11)
Berninghausen O
(9)
Myasnikov AG
(9)
Yokoyama T
(9)
Cate JHD
(8)
Chang ST
(8)
Kratzat H
(8)
Li W
(8)
Li X
(8)
Ward FR
(8)
Wei Z
(8)
Yong X
(8)
Dullea RG
(7)
Klaholz BP
(7)
Liras S
(7)
Mackens-Kiani T
(7)
McClure KF
(7)
Montabana E
(7)
Shirouzu M
(7)
Altman RB
(6)
Blanchard SC
(6)
Holm M
(6)
Natchiar KS
(6)
Rundlet EJ
(6)
Suzuki T
(6)
Taunton J
(6)
Wang HY
(6)
Wang M
(6)
Watson ZL
(6)
Iwasaki S
(5)
Kulathu Y
(5)
Peter JJ
(5)
Thoms M
(5)
Akichika S
(4)
Ameismeier M
(4)
Bhaskar V
(4)
Cavadini S
(4)
Chao JA
(4)
DaRosa PA
(4)
Dong M
(4)
Dong MQ
(4)
Frohlich T
(4)
Fröhlich T
(4)
Graff-Meyer A
(4)
Gumbin SC
(4)
Harper JW
(4)
Hayn M
(4)
Hirschenberger M
(4)
Irie T
(4)
Ishibashi K
(4)
Ishiguro K
(4)
Ito T
(4)
Kirchhoff F
(4)
Koepke L
(4)
Kopito R
(4)
Kopito RR
(4)
Ma D
(4)
Matsuzawa I
(4)
Mishima Y
(4)
Mito M
(4)
Ordureau A
(4)
Paulo JA
(4)
Penchev I
(4)
Saito H
(4)
Sakaguchi Y
(4)
Scavone F
(4)
Schenk AD
(4)
Sparrer KMJ
(4)
Straub JH
(4)
Sturzel CM
(4)
Stürzel CM
(4)
Takahashi M
(4)
Wachalska M
(4)
Wakabayashi K
(4)
Wąchalska M
(4)
Zhao X
(4)
Zuo M
(4)
Zuo MQ
(4)
von Loeffelholz O
(4)
Artus-Revel CG
(3)
Best K
(3)
Bretones G
(3)
Burger J
(3)
Bürger J
(3)
Gilbert W
(3)
More...
Homo / hetero assembly
(1)
hetero
(118)
Assembly composition
(1)
RNA/protein complex
(118)
Assembly polymer count
(36)
83-mer
(11)
86-mer
(9)
80-mer
(8)
85-mer
(8)
81-mer
(7)
50-mer
(6)
53-mer
(6)
84-mer
(6)
48-mer
(5)
54-mer
(5)
45-mer
(4)
46-mer
(3)
51-mer
(3)
52-mer
(3)
56-mer
(3)
59-mer
(3)
79-mer
(3)
82-mer
(3)
47-mer
(2)
58-mer
(2)
78-mer
(2)
88-mer
(2)
162-mer
(1)
171-mer
(1)
172-mer
(1)
31-mer
(1)
43-mer
(1)
44-mer
(1)
49-mer
(1)
61-mer
(1)
62-mer
(1)
63-mer
(1)
65-mer
(1)
87-mer
(1)
89-mer
(1)
92-mer
(1)
Resolution distribution
1.5 - 2
(6)
2.0 - 2.5
(12)
2.5 - 3
(52)
3.0 - 3.5
(35)
3.5 - 4
(10)
4.0 - 4.5
(2)
4.5 - 5
(1)
Release year distribution
2010 - 2015
(3)
2015 - 2020
(33)
2020 - 2025
(102)
2025 - 2030
(8)
Journal
(18)
Science
(29)
Nature
(17)
Nat Commun
(16)
Cell Res
(11)
To be published
(9)
Nat Struct Mol Biol
(8)
Cell
(5)
Mol Cell
(4)
Cell Rep
(3)
PLoS Biol
(3)
Cancer Discov
(2)
Elife
(2)
Front Mol Biosci
(2)
J Biochem
(2)
bioRxiv
(2)
Nat Chem Biol
(1)
Nucleic Acids Res
(1)
RNA
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(118)
Organism name
(2)
Homo sapiens
(113)
Mus musculus
(5)
Molecule name
(3)
60S ribosomal protein L14
(118)
Large ribosomal subunit protein eL14
(118)
CAG-ISL 7
(113)
Molecule type
(1)
Protein
(118)
Gene names
(2)
RPL14
(113)
Rpl14
(5)
Interacting Molecules
(293)
Large ribosomal subunit protein eL18
(118)
Large ribosomal subunit protein eL20
(118)
Large ribosomal subunit protein eL21
(118)
Large ribosomal subunit protein eL32
(118)
Large ribosomal subunit protein eL33
(118)
Large ribosomal subunit protein uL13
(118)
Large ribosomal subunit protein uL3
(118)
Large ribosomal subunit protein uL30
(118)
Large ribosomal subunit protein uL4
(118)
Large ribosomal subunit protein eL36
(117)
Large ribosomal subunit protein eL6
(117)
Large ribosomal subunit protein eL8
(117)
Large ribosomal subunit protein uL22
(117)
Large ribosomal subunit protein uL29
(117)
Large ribosomal subunit protein eL13
(116)
Large ribosomal subunit protein eL15
(116)
Large ribosomal subunit protein eL37
(116)
Large ribosomal subunit protein uL14
(116)
Large ribosomal subunit protein uL15
(116)
Large ribosomal subunit protein uL23
(116)
Large ribosomal subunit protein uL6
(116)
Large ribosomal subunit protein uL24
(115)
Large ribosomal subunit protein eL28
(114)
28S ribosomal RNA
(111)
Large ribosomal subunit protein eL31
(110)
Large ribosomal subunit protein eL30
(108)
Large ribosomal subunit protein eL34
(108)
5.8S ribosomal RNA
(107)
Large ribosomal subunit protein eL19
(107)
Large ribosomal subunit protein eL22
(107)
Large ribosomal subunit protein eL38
(107)
Large ribosomal subunit protein eL43
(107)
Large ribosomal subunit protein uL18
(107)
Large ribosomal subunit protein uL5
(107)
Large ribosomal subunit protein eL39
(106)
Large ribosomal subunit protein eL27
(104)
Large ribosomal subunit protein uL2
(101)
5S ribosomal RNA
(99)
Large ribosomal subunit protein eL29
(98)
Large ribosomal subunit protein eL42
(83)
Large ribosomal subunit protein eL24
(79)
Small ribosomal subunit protein eS32
(68)
Small ribosomal subunit protein RACK1
(65)
Small ribosomal subunit protein eS1
(65)
Small ribosomal subunit protein eS19
(65)
Small ribosomal subunit protein eS21
(65)
Small ribosomal subunit protein eS24
(65)
Small ribosomal subunit protein eS28
(65)
Small ribosomal subunit protein eS6
(65)
Small ribosomal subunit protein eS7
(65)
Small ribosomal subunit protein eS8
(65)
Small ribosomal subunit protein uS14
(65)
Small ribosomal subunit protein uS15
(65)
Small ribosomal subunit protein uS2
(65)
Small ribosomal subunit protein uS3
(65)
Small ribosomal subunit protein uS4
(65)
Small ribosomal subunit protein uS5
(65)
Small ribosomal subunit protein uS7
(65)
Small ribosomal subunit protein uS8
(65)
Small ribosomal subunit protein eS10
(64)
Small ribosomal subunit protein eS26
(64)
Small ribosomal subunit protein uS10
(64)
Small ribosomal subunit protein uS13
(64)
Small ribosomal subunit protein uS17
(64)
Small ribosomal subunit protein uS19
(64)
Small ribosomal subunit protein uS9
(64)
Small ribosomal subunit protein eS25
(63)
Small ribosomal subunit protein uS11
(63)
Small ribosomal subunit protein eS27
(61)
Small ribosomal subunit protein eS17
(60)
Small ribosomal subunit protein uS12
(59)
18S Ribosomal RNA
(58)
Small ribosomal subunit protein eS4, X isoform
(57)
Large ribosomal subunit protein uL1
(55)
Small ribosomal subunit protein eS12
(53)
Small ribosomal subunit protein eS30
(51)
Ubiquitin-ribosomal protein eL40 fusion protein
(51)
Large ribosomal subunit protein uL11
(50)
Ribosomal protein uL16-like
(47)
Eukaryotic translation initiation factor 6
(45)
GTP-binding protein 4
(38)
Probable ribosome biogenesis protein RLP24
(38)
Ubiquitin-ribosomal protein eS31 fusion protein
(36)
Protein LLP homolog
(34)
mRNA turnover protein 4 homolog
(34)
Large ribosomal subunit protein uL16
(30)
Messenger RNA
(28)
Ribosome biogenesis protein NSA2 homolog
(27)
Large ribosomal subunit protein uL10
(26)
Pescadillo homolog
(25)
Ribosomal protein uL30-like
(25)
Zinc finger protein 593
(25)
MKI67 FHA domain-interacting nucleolar phosphoprotein
(24)
Nucleolar GTP-binding protein 2
(22)
tRNA
(21)
Guanine nucleotide-binding protein-like 3
(20)
Ribosomal L1 domain-containing protein 1
(20)
Large ribosomal subunit protein eL40
(19)
Proliferation-associated protein 2G4
(19)
Small ribosomal subunit protein eS31
(18)
More...
Interacting ligands
(1)
MG : MAGNESIUM ION
(1)
Function and Biology
Biological function
(4)
RNA binding
(111)
structural constituent of ribosome
(111)
cadherin binding
(93)
protein binding
(93)
Biological process
(6)
translation
(111)
cytoplasmic translation
(97)
rRNA processing
(93)
ribosomal large subunit biogenesis
(93)
translation at postsynapse
(4)
translation at presynapse
(4)
Biological cell component
(12)
ribosome
(111)
cytoplasm
(97)
cytosol
(97)
cytosolic large ribosomal subunit
(97)
ribonucleoprotein complex
(97)
cytosolic ribosome
(93)
extracellular exosome
(93)
membrane
(93)
postsynaptic density
(93)
postsynapse
(4)
presynapse
(4)
synapse
(4)
Sequence and Structure classification
Pfam accession / name
(1)
PF01929 : Ribosomal_L14e
(118)
Experimental Information
Diffraction protocol
(1)
Single wavelength
(1)
Refinement software
(3)
PHENIX
(11)
phenix.real_space_refine
(10)
REFMAC
(1)
EM microscope model
(4)
FEI TITAN KRIOS
(111)
FEI TECNAI ARCTICA
(4)
JEOL CRYO ARM 300
(3)
TFS KRIOS
(1)
EM detector name
(9)
GATAN K3 (6k x 4k)
(51)
GATAN K2 SUMMIT (4k x 4k)
(34)
GATAN K2 QUANTUM (4k x 4k)
(11)
FEI FALCON IV (4k x 4k)
(10)
FEI FALCON II (4k x 4k)
(4)
GATAN K3 BIOQUANTUM (6k x 4k)
(4)
FEI FALCON III (4k x 4k)
(3)
FEI EAGLE (4k x 4k)
(1)
TVIPS TEMCAM-F416 (4k x 4k)
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
...
Entries 1 to 10 of 118
Select all entries on this page
Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
Li X, Wang M, Denk T, Cheng J
Nat Commun
(2024)
[PMID: 38942792 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-272333 (Preferred)
search this ID
In situ human top-back di-ribosome structure (Composite map)
Human nucleolar pre-60S ribosomal subunit (State H)
Vanden Broeck A, Klinge S
Science
(2023)
[PMID: 37410842 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-271926 (Preferred)
search this ID
Human nucleolar pre-60S ribosomal subunit (State A1)
Vanden Broeck A, Klinge S
Science
(2023)
[PMID: 37410842 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-221154 (Preferred)
search this ID
Human nucleolar pre-60S ribosomal subunit (State C2)
Vanden Broeck A, Klinge S
Science
(2023)
[PMID: 37410842 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-271474 (Preferred)
search this ID
In situ human Hibernating class5 80S ribosome
human nuclear pre-60S ribosomal particle - State E
Zhang Y, Gao N
Cell Res
(2023)
[PMID: 37491604 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
A2M
B8Q
B8W
E7G
OMC
OMG
6MZ
B9H
OMU
P7G
E6G
I4U
MHG
UR3
2MG
5MU
5MU
6MZ
A2M
1MA
7MG
BGH
1MA
2MG
7MG
B8T
B9B
P4U
B8K
M7A
OMC
OMG
OMU
UR3
PDBe complex ID:
PDB-CPX-224865 (Preferred)
search this ID
60S ribosomal subunit bound to the E3-UFM1 complex - state 2 (native)
Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R
Nature
(2024)
[PMID: 38383785 ]
Source organisms: Homo sapiens environmental sample , Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-279392 (Preferred)
search this ID
dormant ribosome with eIF5A, eEF2 and SERBP1
60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)
Penchev I, DaRosa PA, Becker T, Beckmann R, Kopito R
Nature
(2024)
[PMID: 38383785 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-271900 (Preferred)
search this ID
...
Entries 1 to 10 of 118