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Entry Information
Entry status
(1)
Experimental methods
(1)
Electron Microscopy
(54)
Authors
(115)
Amunts A
(29)
Itoh Y
(20)
Rorbach J
(19)
Atanassov I
(15)
Cipullo M
(15)
Khawaja A
(15)
Singh V
(14)
Aibara S
(11)
Laptev I
(11)
Sergiev P
(11)
Minczuk M
(8)
Modelska A
(8)
Li X
(7)
Barrientos A
(6)
Burnside C
(6)
Harper NJ
(6)
Klinge S
(6)
Nguyen MD
(6)
Agrawal RK
(5)
Andrell J
(5)
Andréll J
(5)
Keshavan P
(5)
Koripella RK
(5)
Ramakrishnan V
(5)
Abdelbagi A
(4)
Benhalevy D
(4)
Cai Y
(4)
Chandrasekaran V
(4)
Desai N
(4)
Gopalakrishna S
(4)
Hafner M
(4)
Hallberg BM
(4)
Hällberg BM
(4)
Kazi R
(4)
Krueger A
(4)
Liu Y
(4)
Lobo V
(4)
Marks J
(4)
Misic J
(4)
Naschberger A
(4)
Palenikova P
(4)
Pirozhkova MA
(4)
Páleníková P
(4)
Sarshad AA
(4)
Sharma MR
(4)
Shiriaev D
(4)
Valentin Gese G
(4)
Valentín Gesé G
(4)
Yang H
(4)
Banavali NK
(3)
Beckmann R
(3)
Buschauer R
(3)
Cheng J
(3)
Del'Olio S
(3)
Denk T
(3)
Flygaard RK
(3)
Hassan A
(3)
Izumikawa K
(3)
Li Y
(3)
Nobe Y
(3)
Taoka M
(3)
Wang M
(3)
Whitford PC
(3)
Ban N
(2)
Battersby BJ
(2)
Best RB
(2)
Bhargava K
(2)
Choi A
(2)
Datta PP
(2)
Dreos R
(2)
Filipovska A
(2)
Gatfield D
(2)
Hofig H
(2)
Höfig H
(2)
Kaushal PS
(2)
Kummer E
(2)
Lee RG
(2)
Leibundgut M
(2)
Lenarcic T
(2)
Lenarčič T
(2)
Maiti P
(2)
Nadimpalli HP
(2)
Rackham O
(2)
Remes C
(2)
Richter U
(2)
Risteff P
(2)
Saurer M
(2)
Scaiola A
(2)
Schoenhut T
(2)
Schonhut T
(2)
Schönhut T
(2)
Siira SJ
(2)
Spahr H
(2)
Spremulli LL
(2)
Spåhr H
(2)
Yukhnovets O
(2)
Adori M
(1)
Agrawal EK
(1)
Brown A
(1)
Churchman LS
(1)
More...
Homo / hetero assembly
(1)
hetero
(54)
Assembly composition
(2)
RNA/protein complex
(52)
DNA/RNA/protein complex
(2)
Assembly polymer count
(17)
32-mer
(11)
94-mer
(6)
33-mer
(5)
31-mer
(4)
91-mer
(4)
93-mer
(4)
83-mer
(3)
90-mer
(3)
92-mer
(3)
34-mer
(2)
85-mer
(2)
86-mer
(2)
30-mer
(1)
35-mer
(1)
36-mer
(1)
87-mer
(1)
96-mer
(1)
Resolution distribution
2.0 - 2.5
(4)
2.5 - 3
(19)
3.0 - 3.5
(17)
3.5 - 4
(8)
4.0 - 4.5
(4)
4.5 - 5
(1)
6.5 - 7
(1)
Release year distribution
2010 - 2015
(1)
2015 - 2020
(18)
2020 - 2025
(51)
2025 - 2030
(1)
Journal
(7)
Nature
(17)
Nat Commun
(15)
Elife
(9)
Science
(9)
Proc Natl Acad Sci U S A
(2)
Nat Struct Mol Biol
(1)
To be published
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(54)
Organism name
(2)
Homo sapiens
(50)
Mus musculus
(4)
Molecule name
(7)
28S ribosomal protein S28, mitochondrial
(54)
MRP-S28
(54)
S28mt
(54)
Small ribosomal subunit protein bS1m
(54)
28S ribosomal protein S35, mitochondrial
(50)
MRP-S35
(50)
S35mt
(50)
Molecule type
(1)
Protein
(54)
Gene names
(4)
HSPC007
(50)
MRPS28
(50)
MRPS35
(50)
Mrps28
(4)
Interacting Molecules
(142)
Small ribosomal subunit protein bS16m
(54)
Small ribosomal subunit protein bS18m
(54)
Small ribosomal subunit protein bS6m
(54)
Small ribosomal subunit protein mS22
(54)
Small ribosomal subunit protein mS23
(54)
Small ribosomal subunit protein mS25
(54)
Small ribosomal subunit protein mS26
(54)
Small ribosomal subunit protein mS27
(54)
Small ribosomal subunit protein mS29
(54)
Small ribosomal subunit protein mS31
(54)
Small ribosomal subunit protein mS33
(54)
Small ribosomal subunit protein mS35
(54)
Small ribosomal subunit protein mS39
(54)
Small ribosomal subunit protein mS40
(54)
Small ribosomal subunit protein uS10m
(54)
Small ribosomal subunit protein uS12m
(54)
Small ribosomal subunit protein uS14m
(54)
Small ribosomal subunit protein uS15m
(54)
Small ribosomal subunit protein uS17m
(54)
Small ribosomal subunit protein uS2m
(54)
Small ribosomal subunit protein uS3m
(54)
Small ribosomal subunit protein uS5m
(54)
Small ribosomal subunit protein uS7m
(54)
Small ribosomal subunit protein uS9m
(54)
Small ribosomal subunit protein mS34
(53)
Small ribosomal subunit protein mS38
(53)
Small ribosomal subunit protein uS11m
(52)
Small ribosomal subunit protein bS21m
(51)
Small ribosomal subunit protein mS37
(39)
12S mitochondrial rRNA
(38)
Large ribosomal subunit protein bL19m
(30)
Large ribosomal subunit protein mL55
(30)
Large ribosomal subunit protein bL17m
(29)
Large ribosomal subunit protein bL20m
(29)
Large ribosomal subunit protein bL21m
(29)
Large ribosomal subunit protein bL27m
(29)
Large ribosomal subunit protein bL32m
(29)
Large ribosomal subunit protein bL33m
(29)
Large ribosomal subunit protein bL34m
(29)
Large ribosomal subunit protein bL35m
(29)
Large ribosomal subunit protein bL36m
(29)
Large ribosomal subunit protein bL9m
(29)
Large ribosomal subunit protein mL37
(29)
Large ribosomal subunit protein mL38
(29)
Large ribosomal subunit protein mL39
(29)
Large ribosomal subunit protein mL40
(29)
Large ribosomal subunit protein mL41
(29)
Large ribosomal subunit protein mL42
(29)
Large ribosomal subunit protein mL43
(29)
Large ribosomal subunit protein mL44
(29)
Large ribosomal subunit protein mL45
(29)
Large ribosomal subunit protein mL46
(29)
Large ribosomal subunit protein mL48
(29)
Large ribosomal subunit protein mL49
(29)
Large ribosomal subunit protein mL50
(29)
Large ribosomal subunit protein mL51
(29)
Large ribosomal subunit protein mL52
(29)
Large ribosomal subunit protein mL53
(29)
Large ribosomal subunit protein mL54
(29)
Large ribosomal subunit protein mL62
(29)
Large ribosomal subunit protein mL63
(29)
Large ribosomal subunit protein mL64
(29)
Large ribosomal subunit protein mL65
(29)
Large ribosomal subunit protein mL66
(29)
Large ribosomal subunit protein uL11m
(29)
Large ribosomal subunit protein uL13m
(29)
Large ribosomal subunit protein uL14m
(29)
Large ribosomal subunit protein uL15m
(29)
Large ribosomal subunit protein uL16m
(29)
Large ribosomal subunit protein uL22m
(29)
Large ribosomal subunit protein uL23m
(29)
Large ribosomal subunit protein uL24m
(29)
Large ribosomal subunit protein uL29m
(29)
Large ribosomal subunit protein uL2m
(29)
Large ribosomal subunit protein uL30m
(29)
Large ribosomal subunit protein uL3m
(29)
Large ribosomal subunit protein uL4m
(29)
Large ribosomal subunit protein bL28m
(28)
Large ribosomal subunit protein uL10m
(28)
Large ribosomal subunit protein uL18m
(22)
Messenger RNA
(21)
Large ribosomal subunit protein bL12m
(19)
16S ribosomal RNA
(15)
16S mitochondrial rRNA
(14)
mitochondrial tRNAVal
(14)
12S rRNA
(12)
Putative ribosome-binding factor A, mitochondrial
(11)
E-site tRNA
(7)
Large ribosomal subunit protein uL1m
(7)
cDNA FLJ76688, highly similar to Homo sapiens HSPC071 mRNA
(7)
mt-tRNAVal
(7)
P-site tRNA
(6)
Quinupristin
(6)
Ribosome assembly protein METTL17, mitochondrial
(6)
12S rRNA N(4)-cytidine methyltransferase METTL15
(5)
Dimethyladenosine transferase 1, mitochondrial
(5)
12s rRNA
(4)
E/E-tRNA
(4)
Malonyl-CoA-acyl carrier protein transacylase, mitochondrial
(4)
P/P-tRNA
(4)
More...
Function and Biology
Biological function
(1)
RNA binding
(48)
Biological process
(1)
mitochondrial translation
(52)
Biological cell component
(5)
mitochondrial inner membrane
(52)
mitochondrial small ribosomal subunit
(52)
mitochondrion
(52)
ribonucleoprotein complex
(52)
ribosome
(52)
Sequence and Structure classification
Pfam accession / name
(1)
PF10246 : MRP-S35
(54)
Experimental Information
Refinement software
(3)
PHENIX
(1)
REFMAC
(1)
phenix.real_space_refine
(1)
EM microscope model
(3)
FEI TITAN KRIOS
(48)
TFS KRIOS
(5)
FEI TITAN
(1)
EM detector name
(6)
GATAN K2 SUMMIT (4k x 4k)
(33)
GATAN K3 (6k x 4k)
(11)
FEI FALCON III (4k x 4k)
(4)
GATAN K3 BIOQUANTUM (6k x 4k)
(4)
FEI FALCON II (4k x 4k)
(1)
FEI FALCON IV (4k x 4k)
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
...
Entries 1 to 10 of 54
Select all entries on this page
55S human mitochondrial ribosome with mtRF1 and P-site tRNA
Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N
Science
(2023)
[PMID: 37141370 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
N
OMU
SAC
Y5P
5F0
ACE
5MC
ACE
2MG
5MU
5MU
MA6
N
SAC
Y5P
1MA
AYA
RSQ
RSQ
1MA
2MG
AYA
B8T
PSU
PSU
MA6
OMG
OMU
PDBe complex ID:
PDB-CPX-218031 (Preferred)
search this ID
Human mitochondrial ribosome in complex with antibiotic tigecycline
Khawaja A, Sing V, Nguyen MD, Rorbach J
To be published
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
OMU
5F0
ACE
5MC
ACE
2MG
5MU
5MU
MA6
1MA
THC
1MA
2MG
B8T
PSU
PSU
MA6
OMG
OMU
THC
Assembly name:
ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-290535 (Preferred)
search this ID
Structural insights into unique features of the human mitochondrial ribosome recycling
Sharma MR, Koripella RK, Agrawal RK
Proc Natl Acad Sci U S A
(2019)
[PMID: 30962385 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-289225 (Preferred)
search this ID
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3
Itoh Y, Khawaja A, Rorbach J, Amunts A
Nat Commun
(2020)
[PMID: 32522994 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-289353 (Preferred)
search this ID
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM
Nat Commun
(2024)
[PMID: 38969660 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-289193 (Preferred)
search this ID
Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
Li X, Wang M, Cheng J
Nat Commun
(2024)
[PMID: 38942792 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Assembly name:
ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-280502 (Preferred)
search this ID
Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
Li X, Wang M, Cheng J
Nat Commun
(2024)
[PMID: 38942792 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Assembly name:
ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-280503 (Preferred)
search this ID
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM
Nat Commun
(2024)
[PMID: 38969660 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-289357 (Preferred)
search this ID
Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA)
Singh V, Itoh Y, Amunts A
Nat Commun
(2024)
[PMID: 38769321 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
OMU
SAC
5F0
5MC
2MG
5MU
5MU
MA6
SAC
1MA
AYA
THC
1MA
2MG
AYA
B8T
PSU
PSU
MA6
OMG
OMU
THC
PDBe complex ID:
PDB-CPX-288636 (Preferred)
search this ID
Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution
Singh V, Itoh Y, Amunts A
Nat Commun
(2024)
[PMID: 38769321 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
OMG
5MC
OMU
SAC
5F0
ACE
5MC
ACE
2MG
5MU
5MU
MA6
SAC
1MA
AYA
1MA
2MG
AYA
B8T
PSU
PSU
MA6
OMG
OMU
PDBe complex ID:
PDB-CPX-288637 (Preferred)
search this ID
...
Entries 1 to 10 of 54