Uniprot accession / id : Q9D711  OR   Uniprot accession / id : O00625
 
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Entry Information
Entry status  (1)
REL
(13)
 
Experimental methods  (1)
X-ray diffraction
(13)
 
Authors  (73)
Chen L
(6)
Esaki S
(6)
Fu R
(6)
Liu A
(6)
Liu F
(6)
Rehmani I
(6)
Serrano V
(6)
de Serrano V
(6)
Ali S
(3)
Burke R
(3)
Cheeseman MD
(3)
Esaka S
(3)
Evans LE
(3)
Jones K
(3)
O'Fee L
(3)
Pasqua AE
(3)
Rowlands M
(3)
Rye CS
(3)
Tucker MJ
(3)
Wilding B
(3)
Workman P
(3)
Blagg J
(2)
Brown N
(2)
Campbell PL
(2)
Carter M
(2)
Chessum NEA
(2)
Dexheimer TS
(2)
Fox DA
(2)
Gopallawa I
(2)
Haynes SE
(2)
Jin X
(2)
Kahl D
(2)
Khanna D
(2)
Larsen SD
(2)
Le Bihan YV
(2)
Lisabeth EM
(2)
Martin BR
(2)
Meyers J
(2)
Misek SA
(2)
Mok NY
(2)
Neubig R
(2)
Neubig RR
(2)
Wilson DW
(2)
van Montfort RLM
(2)
Bartlam M
(1)
Chessum NE
(1)
De Billy E
(1)
Eccles SA
(1)
Gao GF
(1)
Hayes A
(1)
Henley AT
(1)
Hisano T
(1)
Lepri S
(1)
Miah A
(1)
Miki K
(1)
Miyatake H
(1)
Miyazaki I
(1)
Okumura H
(1)
Osada H
(1)
Pang H
(1)
Pellegrino L
(1)
Powers M
(1)
Rao Z
(1)
Raynaud F
(1)
Richards M
(1)
Sharp SY
(1)
Simizu S
(1)
Takagi S
(1)
Te Poele R
(1)
Wong LL
(1)
Zeng Q
(1)
van Montfort R
(1)
van Montfort RL
(1)
 
Homo / hetero assembly  (1)
homo
(13)
 
Assembly composition  (1)
protein structure
(13)
 
Assembly polymer count  (1)
monomer
(13)
 
Resolution distribution
1.0 - 1.5
(1)
1.5 - 2
(7)
2.0 - 2.5
(4)
2.5 - 3
(1)
 
Release year distribution
2000 - 2005
(1)
2005 - 2010
(1)
2010 - 2015
(7)
2015 - 2020
(5)
 
Journal  (6)
Proc Natl Acad Sci U S A
(6)
ACS Med Chem Lett
(2)
ACS Pharmacol Transl Sci
(2)
J Biol Chem
(1)
J Med Chem
(1)
Nat Chem Biol
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(13)
 
Organism name  (1)
Homo sapiens
(13)
 
Molecule name  (3)
Pirin
(13)
Probable quercetin 2,3-dioxygenase PIR
(13)
Probable quercetinase
(13)
 
Molecule type  (1)
Protein
(13)
 
Gene names  (1)
PIR
(13)
 
Interacting ligands  (13)
FE : FE (III) ION
(7)
EDO : 1,2-ETHANEDIOL
(5)
FE2 : FE (II) ION
(3)
GOL : GLYCEROL
(3)
MN : MANGANESE (II) ION
(2)
3F1 : N-{[4-(benzyloxy)phenyl](methyl)-lambda~4~-sulfanylidene}-4-methylbenzenesulfonamide
(1)
6JQ : N-{5-[(2,3-dihydro-1,4-benzodioxine-6-carbonyl)amino]-2-methylphenyl}-2-[3-(pyrrolidin-1-yl)propyl]quinoline-6-carboxamide
(1)
CO : COBALT (II) ION
(1)
DMS : DIMETHYL SULFOXIDE
(1)
FJE : [3-azanyl-2,6-bis(fluoranyl)phenyl]-(5-chloranyl-1~{H}-pyrrolo[2,3-b]pyridin-3-yl)methanone
(1)
FJH : ~{N}-[5-(2,3-dihydro-1,4-benzodioxin-6-ylcarbonylamino)-2-methyl-phenyl]-2-methyl-quinoline-6-carboxamide
(1)
K8M : (3R)-N-(4-chlorophenyl)-5,5-difluoro-1-[3-fluoro-5-(pyridin-4-yl)benzene-1-carbonyl]piperidine-3-carboxamide
(1)
K8S : (3S)-N-(4-chlorophenyl)-5,5-difluoro-1-[3-(furan-2-yl)benzene-1-carbonyl]piperidine-3-carboxamide
(1)
 
Function and Biology
EC number / name  (1)
1.13.11.24 : Quercetin 2,3-dioxygenase
(13)
 
Biological function  (6)
dioxygenase activity
(13)
metal ion binding
(13)
oxidoreductase activity
(13)
protein binding
(13)
quercetin 2,3-dioxygenase activity
(13)
transcription coregulator activity
(13)
 
Biological process  (4)
digestion
(13)
monocyte differentiation
(13)
myeloid cell differentiation
(13)
transcription by RNA polymerase II
(13)
 
Biological cell component  (5)
cytoplasm
(13)
cytosol
(13)
nuclear body
(13)
nucleoplasm
(13)
nucleus
(13)
 
Sequence and Structure classification
SCOP fold  (1)
Double-stranded beta-helix
(1)
 
SCOP family  (1)
Pirin-like
(1)
 
CATH class  (1)
Mainly Beta
(11)
 
CATH topology  (1)
Jelly Rolls
(11)
 
Pfam accession / name  (2)
PF02678 : Pirin
(13)
PF05726 : Pirin_C
(13)
 
Experimental Information
Diffraction protocol  (2)
Single wavelength
(12)
MAD
(1)
 
Diffraction radiation source type  (2)
Synchrotron
(10)
Rotating anode
(3)
 
Diffraction source  (9)
APS BEAMLINE 22-ID
(3)
ESRF BEAMLINE MASSIF-1
(2)
RIGAKU MICROMAX-007
(2)
APS BEAMLINE 21-ID-D
(1)
APS BEAMLINE 21-ID-G
(1)
ESRF BEAMLINE ID23-2
(1)
RIGAKU RU300
(1)
SPRING-8 BEAMLINE BL26B2
(1)
SPRING-8 BEAMLINE BL44B2
(1)
 
Synchrotron site  (3)
APS
(5)
ESRF
(3)
SPring-8
(2)
 
Diffraction detector type  (3)
CCD
(9)
Pixel
(3)
Image plate
(1)
 
Refinement software  (4)
REFMAC
(5)
BUSTER
(3)
PHENIX
(3)
CNS
(2)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 13
Entries 1 to 10 of 13
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Study on structure and function relationships in human ferric Pirin
Liu F, Rehmani I, Fu R, Esaka S, Chen L, Serrano V, Liu A
Proc Natl Acad Sci U S A (2013) [PMID: 23716661  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: FE    FE   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
1.8Å resolution
Released: 29 May 2013
Model geometry
Fit model/data
4gul
4gul
4gul
Study on structure and function relationships in human Pirin with Cobalt ion
Liu F, Rehmani I, Fu R, Esaka S, Chen L, Serrano V, Liu A
Proc Natl Acad Sci U S A (2013) [PMID: 23716661  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: CO    CO    EDO   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
2.65Å resolution
Released: 29 May 2013
Model geometry
Fit model/data
4ero
4ero
4ero
Crystal structure of ferric E32V Pirin
Liu F, Rehmani I, Esaki S, Fu R, Chen L, Serrano V, Liu A
Proc Natl Acad Sci U S A (2013) [PMID: 23716661  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: FE2    FE2   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
1.7Å resolution
Released: 29 May 2013
Model geometry
Fit model/data
4hlt
4hlt
4hlt
Study on structure and function relationships in human Pirin with Manganese ion
Liu F, Rehmani I, Fu R, Esaka S, Chen L, Serrano V, Liu A
Proc Natl Acad Sci U S A (2013) [PMID: 23716661  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: MN    MN    EDO   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
1.56Å resolution
Released: 29 May 2013
Model geometry
Fit model/data
4ewe
4ewe
4ewe
Study on structure and function relationships in human Pirin with Fe ion
Liu F, Rehmani I, Chen L, Fu R, Serrano V, Wilson DW, Liu A
Proc Natl Acad Sci U S A (2013) [PMID: 23716661  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: FE    FE   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
2.47Å resolution
Released: 29 May 2013
Model geometry
Fit model/data
4ewa
4ewa
4ewa
Study on structure and function relationships in human Pirin with Mn ion
Liu F, Rehmani I, Chen L, Fu R, Serrano V, Wilson DW, Liu A
Proc Natl Acad Sci U S A (2013) [PMID: 23716661  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: MN    MN   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
2.15Å resolution
Released: 29 May 2013
Model geometry
Fit model/data
4ewd
4ewd
4ewd
Crystal structure of human Pirin in complex with compound 7 (PLX4720)
Ali S, Le Bihan YV, van Montfort RLM
ACS Med Chem Lett (2018) [PMID: 30613326  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: GOL    FE    FE    EDO    FJE   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
1.54Å resolution
Released: 28 Nov 2018
Model geometry
Fit model/data
6h1h
6h1h
6h1h
The complex of CCG-222740 bound to pirin
Lisabeth EM, Jin X, Neubig R
ACS Pharmacol Transl Sci (2019)
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: K8S    K8S    FE    FE    EDO   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
1.79Å resolution
Released: 10 Jul 2019
Model geometry
Data not analysed
Fit model/data
Data not analysed
6n0j
6n0j
6n0j
The complex of CCG-257081 bound to pirin
Lisabeth EM, Jin X, Neubig R
ACS Pharmacol Transl Sci (2019)
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: K8M    K8M    FE    FE    EDO   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
1.46Å resolution
Released: 10 Jul 2019
Model geometry
Data not analysed
Fit model/data
Data not analysed
6n0k
6n0k
6n0k
Crystal structure of human Pirin in complex with bisamide compound 2
Ali S, Le Bihan YV, van Montfort RLM
ACS Med Chem Lett (2018) [PMID: 30613326  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: GOL    FE    FE    FJH   
Assembly name: Pirin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126365 (Preferred)   search this ID
PDBe-KB: O00625   
X-ray diffraction
1.69Å resolution
Released: 28 Nov 2018
Model geometry
Fit model/data
6h1i
6h1i
6h1i
Entries 1 to 10 of 13
Entries 1 to 10 of 13