Uniprot accession / id : Q9DCA2  OR   Uniprot accession / id : P82912
 
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Entry Information
Entry status  (1)
REL
(52)
 
Experimental methods  (1)
Electron Microscopy
(52)
 
Authors  (115)
Amunts A
(29)
Itoh Y
(20)
Rorbach J
(19)
Atanassov I
(15)
Cipullo M
(15)
Khawaja A
(15)
Singh V
(14)
Aibara S
(11)
Laptev I
(11)
Sergiev P
(11)
Minczuk M
(8)
Modelska A
(8)
Li X
(7)
Barrientos A
(6)
Nguyen MD
(6)
Agrawal RK
(5)
Andrell J
(5)
Andréll J
(5)
Keshavan P
(5)
Koripella RK
(5)
Ramakrishnan V
(5)
Abdelbagi A
(4)
Benhalevy D
(4)
Burnside C
(4)
Cai Y
(4)
Chandrasekaran V
(4)
Desai N
(4)
Gopalakrishna S
(4)
Hafner M
(4)
Hallberg BM
(4)
Harper NJ
(4)
Hällberg BM
(4)
Kazi R
(4)
Klinge S
(4)
Krueger A
(4)
Liu Y
(4)
Lobo V
(4)
Marks J
(4)
Misic J
(4)
Naschberger A
(4)
Palenikova P
(4)
Pirozhkova MA
(4)
Páleníková P
(4)
Sarshad AA
(4)
Sharma MR
(4)
Shiriaev D
(4)
Valentin Gese G
(4)
Valentín Gesé G
(4)
Yang H
(4)
Banavali NK
(3)
Beckmann R
(3)
Buschauer R
(3)
Cheng J
(3)
Del'Olio S
(3)
Denk T
(3)
Flygaard RK
(3)
Hassan A
(3)
Izumikawa K
(3)
Li Y
(3)
Nobe Y
(3)
Taoka M
(3)
Wang M
(3)
Whitford PC
(3)
Ban N
(2)
Battersby BJ
(2)
Best RB
(2)
Bhargava K
(2)
Choi A
(2)
Datta PP
(2)
Dreos R
(2)
Filipovska A
(2)
Gatfield D
(2)
Hofig H
(2)
Höfig H
(2)
Kaushal PS
(2)
Kummer E
(2)
Lee RG
(2)
Leibundgut M
(2)
Lenarcic T
(2)
Lenarčič T
(2)
Maiti P
(2)
Nadimpalli HP
(2)
Rackham O
(2)
Remes C
(2)
Richter U
(2)
Risteff P
(2)
Saurer M
(2)
Scaiola A
(2)
Schoenhut T
(2)
Schonhut T
(2)
Schönhut T
(2)
Siira SJ
(2)
Spahr H
(2)
Spremulli LL
(2)
Spåhr H
(2)
Yukhnovets O
(2)
Adori M
(1)
Agrawal EK
(1)
Brown A
(1)
Churchman LS
(1)
 
More...
 
Homo / hetero assembly  (1)
hetero
(52)
 
Assembly composition  (2)
RNA/protein complex
(50)
DNA/RNA/protein complex
(2)
 
Assembly polymer count  (17)
32-mer
(11)
94-mer
(6)
31-mer
(4)
91-mer
(4)
93-mer
(4)
33-mer
(3)
83-mer
(3)
90-mer
(3)
92-mer
(3)
34-mer
(2)
85-mer
(2)
86-mer
(2)
30-mer
(1)
35-mer
(1)
36-mer
(1)
87-mer
(1)
96-mer
(1)
 
Resolution distribution
2.0 - 2.5
(4)
2.5 - 3
(17)
3.0 - 3.5
(17)
3.5 - 4
(8)
4.0 - 4.5
(4)
4.5 - 5
(1)
6.5 - 7
(1)
 
Release year distribution
2010 - 2015
(1)
2015 - 2020
(18)
2020 - 2025
(49)
2025 - 2030
(1)
 
Journal  (7)
Nat Commun
(15)
Nature
(15)
Elife
(9)
Science
(9)
Proc Natl Acad Sci U S A
(2)
Nat Struct Mol Biol
(1)
To be published
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(52)
 
Molecule name  (6)
28S ribosomal protein S11, mitochondrial
(52)
MRP-S11
(52)
S11mt
(52)
Small ribosomal subunit protein uS11m
(52)
Cervical cancer proto-oncogene 2 protein
(48)
HCC-2
(48)
 
Molecule type  (1)
Protein
(52)
 
Gene names  (4)
HCC2
(48)
MRPS11
(48)
RPMS11
(48)
Mrps11
(4)
 
Representative Structures
Representative Structures
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...
Entries 1 to 10 of 52
Entries 1 to 10 of 52
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55S human mitochondrial ribosome with mtRF1 and P-site tRNA
Saurer M, Leibundgut M, Scaiola A, Schoenhut T, Ban N
Science (2023) [PMID: 37141370  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GDP    K    K    MG    VAL    ZN    VAL    ZN    ATP    GDP    MG    ATP    MET    MET   
Modified residues: OMG    5MC    N    OMU    SAC    Y5P    5F0    ACE    5MC    ACE    2MG    5MU    5MU    MA6    N    SAC    Y5P    1MA    AYA    RSQ    RSQ    1MA    2MG    AYA    B8T    PSU    PSU    MA6    OMG    OMU   
PDBe complex ID: PDB-CPX-218031 (Preferred)   search this ID
PDBe-KB: P82912    Q9Y3D3    P82663    P82930    Q9P0M9    Q8TCC3    (view 77 more)
Electron Microscopy
3.1Å resolution
Released: 14 Jun 2023
Model geometry
Fit model/data
Data not analysed
8oir
8oir
8oir
Structural insights into unique features of the human mitochondrial ribosome recycling
Sharma MR, Koripella RK, Agrawal RK
Proc Natl Acad Sci U S A (2019) [PMID: 30962385  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG   
PDBe complex ID: PDB-CPX-289225 (Preferred)   search this ID
PDBe-KB: P82912    Q9Y3D3    P82663    Q7Z7H8    Q9P015    Q9BYC9    (view 74 more)
Electron Microscopy
4.4Å resolution
Released: 17 Apr 2019
Model geometry
Fit model/data
Data not analysed
6nu3
6nu3
6nu3
Human mitochondrial ribosome in complex with antibiotic tigecycline
Khawaja A, Sing V, Nguyen MD, Rorbach J
To be published
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GDP    K    K    MG    VAL    FES    VAL    ATP    GDP    MG    T1C    ATP    T1C    FES   
Modified residues: OMG    5MC    OMU    5F0    ACE    5MC    ACE    2MG    5MU    5MU    MA6    1MA    THC    1MA    2MG    B8T    PSU    PSU    MA6    OMG    OMU    THC   
Assembly name: ribosomal protein and RNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-290535 (Preferred)   search this ID
PDBe-KB: P82912    P82930    Q9Y3D3    P82663    Q9P015    Q9BYC9    (view 74 more)
Electron Microscopy
2.4Å resolution
Released: 12 Mar 2025
Model geometry
Fit model/data
Data not analysed
8rri
8rri
8rri
Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3
Itoh Y, Khawaja A, Rorbach J, Amunts A
Nat Commun (2020) [PMID: 32522994  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GNP    K    K    MG    SRY    FES    ZN    NAD    ZN    ATP    GNP    MG    SPM    ATP    SRY    FES   
Modified residues: 5MC    5MC    5MU    5MU    MA6    AYA    AYA    B8T    MA6   
PDBe complex ID: PDB-CPX-289353 (Preferred)   search this ID
PDBe-KB: P82912    P82930    Q9Y3D3    P82663    P46199    Q9Y399    (view 26 more)
Electron Microscopy
3.14Å resolution
Released: 3 Jun 2020
Model geometry
Fit model/data
Data not analysed
6rw5
6rw5
6rw5
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM
Nat Commun (2024) [PMID: 38969660  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GDP    K    K    MG    FES    ZN    SAH    NAD    ZN    ATP    GDP    MG    SAH    ATP    FES   
Modified residues: 5MC    5F0    5MC    5MU    5MU    MA6    AYA    AYA    B8T    MA6   
PDBe complex ID: PDB-CPX-289193 (Preferred)   search this ID
PDBe-KB: P82912    P82930    Q9Y3D3    P82663    Q9Y399    P82650    (view 24 more)
Electron Microscopy
3.34Å resolution
Released: 26 Jun 2024
Model geometry
Fit model/data
Data not analysed
8qrl
8qrl
8qrl
Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
Li X, Wang M, Cheng J
Nat Commun (2024) [PMID: 38942792  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GDP    MG    ZN    ZN    GDP    MG    T1C    T1C   
Assembly name: ribosomal protein and RNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-280502 (Preferred)   search this ID
PDBe-KB: P82912    Q14197    Q7Z7H8    Q9P015    Q9BYC9    Q9P0M9    (view 74 more)
Electron Microscopy
3.2Å resolution
Released: 10 Jul 2024
Model geometry
Fit model/data
Data not analysed
8xt0
8xt0
8xt0
Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
Li X, Wang M, Cheng J
Nat Commun (2024) [PMID: 38942792  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GDP    MG    ZN    ZN    GDP    MG    T1C    T1C   
Assembly name: ribosomal protein and RNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-280503 (Preferred)   search this ID
PDBe-KB: P82912    Q14197    Q7Z7H8    Q9P015    Q9BYC9    Q9P0M9    (view 74 more)
Electron Microscopy
3.3Å resolution
Released: 10 Jul 2024
Model geometry
Fit model/data
Data not analysed
8xt2
8xt2
8xt2
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
Valentin Gese G, Cipullo M, Rorbach J, Hallberg BM
Nat Commun (2024) [PMID: 38969660  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GNP    K    K    MG    SRY    FES    ZN    NAD    ZN    ATP    GNP    MG    SPM    ATP    SRY    FES   
Modified residues: 5MC    5MC    5MU    5MU    MA6    AYA    AYA    B8T    MA6   
PDBe complex ID: PDB-CPX-289357 (Preferred)   search this ID
PDBe-KB: P82912    P82930    Q9Y3D3    P82663    Q9Y399    P82650    (view 25 more)
Electron Microscopy
3.05Å resolution
Released: 26 Jun 2024
Model geometry
Fit model/data
Data not analysed
8qrm
8qrm
8qrm
Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA)
Singh V, Itoh Y, Amunts A
Nat Commun (2024) [PMID: 38769321  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GDP    K    SPD    K    MG    VAL    FES    ZN    VAL    NAD    ZN    ATP    GDP    MG    SPM    ATP    PUT    FES   
Modified residues: OMG    5MC    OMU    SAC    5F0    5MC    2MG    5MU    5MU    MA6    SAC    1MA    AYA    THC    1MA    2MG    AYA    B8T    PSU    PSU    MA6    OMG    OMU    THC   
PDBe complex ID: PDB-CPX-288636 (Preferred)   search this ID
PDBe-KB: P82912    P82930    Q9Y3D3    P82663    Q7Z7H8    Q9P015    (view 76 more)
Electron Microscopy
2.21Å resolution
Released: 13 Jul 2022
Model geometry
Fit model/data
Data not analysed
7qi4
7qi4
7qi4
Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution
Singh V, Itoh Y, Amunts A
Nat Commun (2024) [PMID: 38769321  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: GDP    K    SPD    K    MG    VAL    FES    ZN    VAL    NAD    ZN    ATP    GDP    MG    SPM    ATP    PUT    FES   
Modified residues: OMG    5MC    OMU    SAC    5F0    ACE    5MC    ACE    2MG    5MU    5MU    MA6    SAC    1MA    AYA    1MA    2MG    AYA    B8T    PSU    PSU    MA6    OMG    OMU   
PDBe complex ID: PDB-CPX-288637 (Preferred)   search this ID
PDBe-KB: P82912    P82930    Q9Y3D3    P82663    Q7Z7H8    Q9P015    (view 76 more)
Electron Microscopy
2.63Å resolution
Released: 5 Jul 2023
Model geometry
Fit model/data
Data not analysed
7qi5
7qi5
7qi5
...
Entries 1 to 10 of 52
Entries 1 to 10 of 52