Uniprot accession / id : Q9QZ15  OR   Uniprot accession / id : Q9UMR7
 
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Entry Information
Entry status  (1)
REL
(2)
 
Experimental methods  (1)
X-ray diffraction
(2)
 
Authors  (7)
Hanashima S
(2)
Ikeda A
(2)
Kojima T
(2)
Matsumoto N
(2)
Nagae M
(2)
Yamaguchi Y
(2)
Yamamoto K
(2)
 
Homo / hetero assembly  (1)
homo
(2)
 
Assembly composition  (1)
protein structure
(2)
 
Assembly polymer count  (1)
monomer
(2)
 
Resolution distribution
2.5 - 3
(1)
3.0 - 3.5
(1)
 
Release year distribution
2015 - 2020
(2)
 
Journal  (1)
FEBS Lett
(2)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(2)
 
Organism name  (1)
Homo sapiens
(2)
 
Molecule name  (5)
C-type lectin DDB27
(2)
C-type lectin domain family 4 member A
(2)
C-type lectin superfamily member 6
(2)
Dendritic cell immunoreceptor
(2)
Lectin-like immunoreceptor
(2)
 
Molecule type  (1)
Protein
(2)
 
Gene names  (5)
CLEC4A
(2)
CLECSF6
(2)
DCIR
(2)
HDCGC13P
(2)
LLIR
(2)
 
Interacting ligands  (3)
CA : CALCIUM ION
(2)
MAN : alpha-D-mannopyranose
(1)
NAG : 2-acetamido-2-deoxy-beta-D-glucopyranose
(1)
 
Sequence and Structure classification
CATH class  (1)
Alpha Beta
(2)
 
CATH topology  (1)
Mannose-Binding Protein A; Chain A
(2)
 
Pfam accession / name  (1)
PF00059 : Lectin_C
(2)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(2)
 
Diffraction radiation source type  (1)
Synchrotron
(2)
 
Diffraction source  (1)
PHOTON FACTORY BEAMLINE BL-17A
(2)
 
Synchrotron site  (1)
Photon Factory
(2)
 
Representative Structures
Representative Structures
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Entries 1 to 2 of 2
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Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in complex with biantennary glycan
Nagae M, Yamaguchi Y
FEBS Lett (2016) [PMID: 27015765  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: CA    CA   
Carbohydrate polymer components:
Molecule 1 - MAN(1), NAG(1)
Assembly name: C-type lectin domain family 4 member A (Preferred)   search this complex
PDBe complex ID: PDB-CPX-193970 (Preferred)   search this ID
PDBe-KB: Q9UMR7   
X-ray diffraction
2.902Å resolution
Released: 11 May 2016
Model geometry
Fit model/data
5b1x
5b1x
5b1x
Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in ligand-free form
Nagae M, Yamaguchi Y
FEBS Lett (2016) [PMID: 27015765  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: CA    CA   
Assembly name: C-type lectin domain family 4 member A (Preferred)   search this complex
PDBe complex ID: PDB-CPX-193970 (Preferred)   search this ID
PDBe-KB: Q9UMR7   
X-ray diffraction
3.05Å resolution
Released: 11 May 2016
Model geometry
Fit model/data
5b1w
5b1w
5b1w
Entries 1 to 2 of 2
Entries 1 to 2 of 2