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REL
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Arrowsmith CH
(9)
Brown PJ
(8)
Hashimoto N
(8)
Ito A
(8)
Jin J
(8)
Nakata A
(8)
Namie R
(8)
Nishigaya Y
(8)
Niwa H
(8)
Sato S
(8)
Shirai F
(8)
Shirouzu M
(8)
Sumiya T
(8)
Takase S
(8)
Umehara T
(8)
Vedadi M
(8)
Yoshida M
(8)
Dong A
(7)
Honma T
(7)
Koyama H
(7)
Sato T
(7)
Babault N
(6)
Chen X
(6)
Edwards AM
(6)
Liu J
(6)
Structural Genomics Consortium (SGC)
(6)
Wu H
(6)
Xiong Y
(6)
Zeng H
(6)
Bountra C
(5)
Li F
(5)
Sonoda T
(5)
Allis CD
(4)
Bellon S
(4)
Bellon SF
(4)
Bochkarev A
(4)
Cantone N
(4)
Cummings R
(4)
Hoelper D
(4)
Jain SU
(4)
Jayaram H
(4)
Kikuzato K
(4)
Lewis PW
(4)
Lundgren SM
(4)
Maemoto Y
(4)
Matsuoka S
(4)
Poy F
(4)
Weigelt J
(4)
Allali-Hassani A
(3)
Hiramoto K
(3)
Ihara K
(3)
Ishii K
(3)
Ishiyama T
(3)
Katagiri T
(3)
Katayama K
(3)
Suzuki M
(3)
Torihata M
(3)
Tsuda E
(3)
Yasumatsu I
(3)
Yotsumoto K
(3)
Andrews S
(2)
Barsyte D
(2)
Chau I
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Chen H
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Frye SV
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Herold JM
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Igarashi W
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Jia S
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Kireev DB
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Kozieradzki I
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Liu F
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Loppnau P
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Min J
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Moresco JJ
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Nagy PL
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Senisterra G
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Shan CM
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Siarheyeva A
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Tong L
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Wang J
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Wasney GA
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Xu K
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Yates JR
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Yue JX
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Amaya MF
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Antoshenko T
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Arata M
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Arora K
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BABAULT N
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BROWN PJ
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Barsyte-Lovejoy D
(1)
Briknarova K
(1)
Briknarová K
(1)
Campagna-Slater V
(1)
Chavda N
(1)
Chiang GG
(1)
Cocozaki A
(1)
DONG A
(1)
Dimaggio PA
(1)
Dombrovski L
(1)
More...
Homo / hetero assembly
(2)
homo
(23)
hetero
(7)
Assembly composition
(2)
protein structure
(23)
protein/protein complex
(7)
Assembly polymer count
(3)
dimer
(21)
monomer
(5)
tetramer
(4)
Resolution distribution
1.0 - 1.5
(4)
1.5 - 2
(20)
2.0 - 2.5
(3)
2.5 - 3
(3)
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2005 - 2010
(3)
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(2)
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(14)
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(13)
2025 - 2030
(3)
Journal
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J Med Chem
(8)
Bioorg Med Chem Lett
(5)
Proc Natl Acad Sci U S A
(4)
ACS Med Chem Lett
(2)
Bioorg Med Chem
(2)
Elife
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(1)
Nat Chem Biol
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(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(30)
Organism name
(1)
Homo sapiens
(30)
Molecule name
(7)
Euchromatic histone-lysine N-methyltransferase 2
(30)
H3-K9-HMTase 3
(30)
HLA-B-associated transcript 8
(30)
Histone H3-K9 methyltransferase 3
(30)
Histone-lysine N-methyltransferase EHMT2
(30)
Lysine N-methyltransferase 1C
(30)
Protein G9a
(30)
Molecule type
(1)
Protein
(30)
Gene names
(6)
BAT8
(30)
C6orf30
(30)
EHMT2
(30)
G9A
(30)
KMT1C
(30)
NG36
(30)
Interacting Molecules
(2)
Histone H3.1
(6)
Chromobox protein homolog 3
(1)
Interacting ligands
(30)
ZN : ZINC ION
(29)
SAM : S-ADENOSYLMETHIONINE
(16)
SFG : SINEFUNGIN
(8)
EDO : 1,2-ETHANEDIOL
(5)
SAH : S-ADENOSYL-L-HOMOCYSTEINE
(5)
CL : CHLORIDE ION
(4)
TRS : 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
(4)
2OD : 5'-methoxy-6'-[3-(pyrrolidin-1-yl)propoxy]spiro[cyclobutane-1,3'-indol]-2'-amine
(1)
7KZ : N4-(1-methylpiperidin-4-yl)-N2-hexyl-6,7-dimethoxyquinazoline-2,4-diamine
(1)
7L6 : 6,7-dimethoxy-N-(1-methylpiperidin-4-yl)-2-(morpholin-4-yl)quinazolin-4-amine
(1)
90P : N~2~-cyclohexyl-N~4~-(1-ethylpiperidin-4-yl)-6,7-dimethoxy-N~2~-methylquinazoline-2,4-diamine
(1)
9HG : N~2~-cyclopentyl-6,7-dimethoxy-N~2~-methyl-N~4~-(1-methylpiperidin-4-yl)quinazoline-2,4-diamine
(1)
9HJ : 6,7-dimethoxy-N~2~-methyl-N~4~-(1-methylpiperidin-4-yl)-N~2~-propylquinazoline-2,4-diamine
(1)
A1AEB : (2R)-1-(azetidin-1-yl)-3-(2-methoxy-5-{[4-methyl-6-(methylamino)pyrimidin-2-yl]amino}phenoxy)propan-2-ol
(1)
A1L07 : 3,6,6-trimethyl-~{N}-[(2~{S})-1-[[4-(1-methylpiperidin-4-yl)oxyphenyl]amino]-1-oxidanylidene-hexan-2-yl]-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide
(1)
A1L08 : 3,6,6-trimethyl-4-oxidanylidene-~{N}-[(2~{S})-1-oxidanylidene-1-[(phenylmethyl)amino]hexan-2-yl]-5,7-dihydro-1~{H}-indole-2-carboxamide
(1)
A1L09 : ~{N}-[(2~{S})-1-[[4-[(dimethylamino)methyl]phenyl]methylamino]-1-oxidanylidene-hexan-2-yl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide
(1)
CIQ : 2-cyclohexyl-6-methoxy-N-[1-(1-methylethyl)piperidin-4-yl]-7-(3-pyrrolidin-1-ylpropoxy)quinazolin-4-amine
(1)
DXQ : 7-[3-(dimethylamino)propoxy]-6-methoxy-2-(4-methyl-1,4-diazepan-1-yl)-N-(1-methylpiperidin-4-yl)quinazolin-4-amine
(1)
F80 : N2-[4-methoxy-3-(2,3,4,7-tetrahydro-1H-azepin-5-yl)phenyl]-N4,6-dimethyl-pyrimidine-2,4-diamine
(1)
G4R : N-(6-methoxy-4-{[1-(propan-2-yl)piperidin-4-yl]amino}-7-[3-(pyrrolidin-1-yl)propoxy]quinazolin-2-yl)prop-2-enamide
(1)
G5U : N-(6-methoxy-4-{[1-(propan-2-yl)piperidin-4-yl]amino}-7-[3-(pyrrolidin-1-yl)propoxy]quinazolin-2-yl)propanamide
(1)
GOL : GLYCEROL
(1)
H30 : 5'-methoxy-6'-(1-methyl-2,3,4,7-tetrahydroazepin-5-yl)spiro[cyclobutane-1,3'-indole]-2'-amine
(1)
I5X : ~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)-3-methylsulfanyl-propyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide
(1)
I6L : ~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)pentyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide
(1)
I6S : 3,6,6-trimethyl-4-oxidanylidene-~{N}-[(2~{S})-1-oxidanylidene-1-phenylazanyl-hexan-2-yl]-5,7-dihydro-1~{H}-indole-2-carboxamide
(1)
I6Z : ~{N}-[(2~{S})-4-cyclopropyl-1-oxidanylidene-1-phenylazanyl-butan-2-yl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide
(1)
J26 : N-[(2S)-1-[(4-cyanophenyl)amino]-4-cyclopropyl-1-oxidanylidene-butan-2-yl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1H-indole-2-carboxamide
(1)
N47 : N~2~-{4-methoxy-3-[3-(pyrrolidin-1-yl)propoxy]phenyl}-N~4~,6-dimethylpyrimidine-2,4-diamine
(1)
Function and Biology
EC number / name
(1)
2.1.1.367 : [Histone H3]-lysine(9) N-methyltransferase
(30)
Biological function
(4)
histone methyltransferase activity
(25)
p53 binding
(25)
protein-lysine N-methyltransferase activity
(25)
zinc ion binding
(25)
Biological cell component
(1)
nucleus
(24)
Sequence and Structure classification
CATH class
(1)
Mainly Beta
(15)
Representative Structures
Representative Structures
Entries
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Entries 1 to 10 of 30
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Crystal structure of EHMT2 SET domain in complex with compound 10
Suzuki M, Katayama K
ACS Med Chem Lett
(2021)
[PMID: 33488973 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone-lysine N-methyltransferase EHMT2
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-188603 (Preferred)
search this ID

Structure of G9a SET-domain with Histone H3K9norLeucine mutant peptide and bound S-adenosylmethionine
Jayaram H, Bellon SF, Poy F
Proc Natl Acad Sci U S A
(2016)
[PMID: 27185940 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Histone-lysine N-methyltransferase EHMT2 and Histone H3.1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-159461 (Preferred)
search this ID
Structure of G9a SET-domain with Histone H3K9M mutant peptide and bound S-adenosylmethionine
Jayaram H, Bellon SF, Poy F
Proc Natl Acad Sci U S A
(2016)
[PMID: 27185940 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Histone-lysine N-methyltransferase EHMT2 and Histone H3.1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-159461 (Preferred)
search this ID
Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 17: N~2~-cyclopentyl-6,7-dimethoxy-N~2~-methyl-N~4~-(1-methylpiperidin-4-yl)quinazoline-2,4-diamine
Babault N, Xiong Y, Liu J, Jin J
Bioorg Med Chem
(2017)
[PMID: 28662962 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone-lysine N-methyltransferase EHMT2
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-188602 (Preferred)
search this ID

Crystal structure of catalytic domain of G9a with MS012
DONG A, ZENG H, LIU J, XIONG Y, BABAULT N, JIN J, TEMPEL W, Bountra C, Arrowsmith CH, Edwards AM, WU H, BROWN PJ, Structural Genomics Consortium (SGC)
J Med Chem
(2017)
[PMID: 28135087 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone-lysine N-methyltransferase EHMT2
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-188603 (Preferred)
search this ID

Structure of human G9a SET-domain (EHMT2) in complex with inhibitor MS0124
Babault N, Xiong Y, Liu J, Jin J
J Med Chem
(2017)
[PMID: 28135087 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone-lysine N-methyltransferase EHMT2
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-188603 (Preferred)
search this ID

Structure of G9a SET-domain with Histone H3K9Ala mutant peptide and bound S-adenosylmethionine
Jayaram H, Bellon SF, Poy F
Proc Natl Acad Sci U S A
(2016)
[PMID: 27185940 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Histone-lysine N-methyltransferase EHMT2 and Histone H3.1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-159461 (Preferred)
search this ID
Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 13
Babault N, Xiong Y, Liu J, Jin J
Bioorg Med Chem
(2017)
[PMID: 28662962 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone-lysine N-methyltransferase EHMT2
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-188603 (Preferred)
search this ID

Structure of G9a SET-domain with Histone H3K9M peptide and excess SAH
Jayaram H, Bellon SF, Poy F
Proc Natl Acad Sci U S A
(2016)
[PMID: 27185940 ]
Source organism: Homo sapiens
Assembly composition: protein/protein complex
Assembly name:
Histone-lysine N-methyltransferase EHMT2 and Histone H3.1
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-159461 (Preferred)
search this ID
Crystal structure of catalytic domain of G9a with MS0105
Dong A, Zeng H, Liu J, Xiong Y, Babault N, Jin J, Walker JR, Bountra C, Arrowsmith CH, Edwards AM, Wu H, Brown PJ, Structural Genomics Consortium (SGC)
To be published
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Histone-lysine N-methyltransferase EHMT2
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-188603 (Preferred)
search this ID

Entries 1 to 10 of 30