HEADER RIBOSOMAL PROTEIN 02-JUL-96 1DIV TITLE RIBOSOMAL PROTEIN L9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L9; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: PROKARYOTIC SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422 KEYWDS RIBOSOMAL PROTEIN, RRNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.W.HOFFMAN,C.CAMERON,C.DAVIES,S.E.GERCHMAN,J.H.KYCIA, AUTHOR 2 S.PORTER,V.RAMAKRISHNAN,S.W.WHITE REVDAT 2 24-FEB-09 1DIV 1 VERSN REVDAT 1 11-JAN-97 1DIV 0 JRNL AUTH D.W.HOFFMAN,C.DAVIES,S.E.GERCHMAN,J.H.KYCIA, JRNL AUTH 2 S.J.PORTER,S.W.WHITE,V.RAMAKRISHNAN JRNL TITL CRYSTAL STRUCTURE OF PROKARYOTIC RIBOSOMAL PROTEIN JRNL TITL 2 L9: A BI-LOBED RNA-BINDING PROTEIN. JRNL REF EMBO J. V. 13 205 1994 JRNL REFN ISSN 0261-4189 JRNL PMID 8306963 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.RAMAKRISHNAN,C.DAVIES,S.E.GERCHMAN,B.L.GOLDEN, REMARK 1 AUTH 2 D.W.HOFFMANN,T.N.JAISHREE,J.H.KYCIA,S.PORTER, REMARK 1 AUTH 3 S.W.WHITE REMARK 1 TITL STRUCTURES OF PROKARYOTIC RIBOSOMAL PROTEINS: REMARK 1 TITL 2 IMPLICATIONS FOR RNA BINDING AND EVOLUTION REMARK 1 REF BIOCHEM.CELL BIOL. V. 73 979 1995 REMARK 1 REFN ISSN 0829-8211 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.L.HERBST,L.M.NICHOLS,R.F.GESTELAND,R.B.WEISS REMARK 1 TITL A MUTATION IN RIBOSOMAL PROTEIN L9 AFFECTS REMARK 1 TITL 2 RIBOSOMAL HOPPING DURING TRANSLATION OF GENE 60 REMARK 1 TITL 3 FROM BACTERIOPHAGE T4 REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 12525 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.72 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DIV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 67.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 18.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 135.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -93.96 -140.17 REMARK 500 ASP A 8 87.34 -43.41 REMARK 500 VAL A 9 -139.59 -148.01 REMARK 500 GLU A 17 90.78 -66.67 REMARK 500 ASN A 27 0.87 -65.64 REMARK 500 PHE A 29 -67.83 -124.95 REMARK 500 PRO A 41 -6.27 -58.37 REMARK 500 GLU A 73 5.22 -69.53 REMARK 500 THR A 76 110.66 -167.76 REMARK 500 GLU A 85 67.66 -40.71 REMARK 500 ALA A 118 -92.43 -88.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 1DIV A 1 149 UNP P02417 RL9_BACST 1 149 SEQRES 1 A 149 MET LYS VAL ILE PHE LEU LYS ASP VAL LYS GLY LYS GLY SEQRES 2 A 149 LYS LYS GLY GLU ILE LYS ASN VAL ALA ASP GLY TYR ALA SEQRES 3 A 149 ASN ASN PHE LEU PHE LYS GLN GLY LEU ALA ILE GLU ALA SEQRES 4 A 149 THR PRO ALA ASN LEU LYS ALA LEU GLU ALA GLN LYS GLN SEQRES 5 A 149 LYS GLU GLN ARG GLN ALA ALA GLU GLU LEU ALA ASN ALA SEQRES 6 A 149 LYS LYS LEU LYS GLU GLN LEU GLU LYS LEU THR VAL THR SEQRES 7 A 149 ILE PRO ALA LYS ALA GLY GLU GLY GLY ARG LEU PHE GLY SEQRES 8 A 149 SER ILE THR SER LYS GLN ILE ALA GLU SER LEU GLN ALA SEQRES 9 A 149 GLN HIS GLY LEU LYS LEU ASP LYS ARG LYS ILE GLU LEU SEQRES 10 A 149 ALA ASP ALA ILE ARG ALA LEU GLY TYR THR ASN VAL PRO SEQRES 11 A 149 VAL LYS LEU HIS PRO GLU VAL THR ALA THR LEU LYS VAL SEQRES 12 A 149 HIS VAL THR GLU GLN LYS HELIX 1 1 GLY A 13 LYS A 15 5 3 HELIX 2 2 TYR A 25 ASN A 28 1 4 HELIX 3 3 PRO A 41 LYS A 74 1 34 HELIX 4 4 GLU A 85 GLY A 87 5 3 HELIX 5 5 SER A 95 HIS A 106 1 12 HELIX 6 6 LYS A 112 LYS A 114 5 3 SHEET 1 A 3 GLU A 17 ASN A 20 0 SHEET 2 A 3 LYS A 2 PHE A 5 -1 N PHE A 5 O GLU A 17 SHEET 3 A 3 ALA A 36 GLU A 38 -1 N ILE A 37 O ILE A 4 SHEET 1 B 3 VAL A 77 ALA A 81 0 SHEET 2 B 3 VAL A 137 GLU A 147 1 N HIS A 144 O VAL A 77 SHEET 3 B 3 GLY A 125 HIS A 134 -1 N HIS A 134 O VAL A 137 CRYST1 135.000 37.300 49.000 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020408 0.00000