HEADER TRANSFERASE 04-AUG-04 1VLM TITLE CRYSTAL STRUCTURE OF SAM-DEPENDENT METHYLTRANSFERASE, POSSIBLE TITLE 2 HISTAMINE N-METHYLTRANSFERASE (TM1293) FROM THERMOTOGA MARITIMA AT TITLE 3 2.20 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: POSSIBLE HISTAMINE N-METHYLTRANSFERASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1293, SAM-DEPENDENT METHYLTRANSFERASE, POSSIBLE HISTAMINE N- KEYWDS 2 METHYLTRANSFERASE, STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, JOINT CENTER FOR STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 1VLM 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1VLM 1 VERSN REVDAT 4 24-FEB-09 1VLM 1 VERSN REVDAT 3 28-MAR-06 1VLM 1 JRNL REVDAT 2 18-JAN-05 1VLM 1 AUTHOR KEYWDS REMARK REVDAT 1 24-AUG-04 1VLM 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SAM-DEPENDENT METHYLTRANSFERASE, JRNL TITL 2 POSSIBLE HISTAMINE N-METHYLTRANSFERASE (TM1293) FROM JRNL TITL 3 THERMOTOGA MARITIMA AT 2.20 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3335 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3110 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4495 ; 1.445 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7147 ; 0.846 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 5.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;33.502 ;22.550 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;15.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.056 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3716 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 762 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 597 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2988 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1641 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2113 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.089 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.079 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 1.651 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 852 ; 0.411 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3279 ; 2.970 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1315 ; 5.469 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1215 ; 7.898 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 207 2 REMARK 3 1 A 1 A 207 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 1209 ; 0.07 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1864 ; 0.43 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 1209 ; 0.21 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1864 ; 0.91 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2080 15.9060 86.8160 REMARK 3 T TENSOR REMARK 3 T11: -0.2164 T22: -0.2116 REMARK 3 T33: -0.1287 T12: 0.0080 REMARK 3 T13: -0.0113 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.5072 L22: 1.4636 REMARK 3 L33: 1.4004 L12: 0.3276 REMARK 3 L13: 0.3386 L23: 0.8361 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0975 S13: -0.1124 REMARK 3 S21: 0.0075 S22: 0.0140 S23: -0.0772 REMARK 3 S31: 0.1008 S32: 0.0987 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): 54.1030 15.2200 36.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0040 REMARK 3 T33: -0.0456 T12: 0.0669 REMARK 3 T13: -0.0256 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.6295 L22: 3.1425 REMARK 3 L33: 3.3720 L12: -0.7872 REMARK 3 L13: -2.7165 L23: 0.2026 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.0575 S13: 0.1458 REMARK 3 S21: 0.0400 S22: 0.0327 S23: 0.4096 REMARK 3 S31: -0.2421 S32: -0.2535 S33: -0.0240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. WEAK DENSITY FOR RESIDUES A140-149 3. SOME REMARK 3 UNMODELED DENSITY NEAR A300 (NA ION) REMARK 4 REMARK 4 1VLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000001987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-03; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.2.1; 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0032; 1.0032,0.9796,0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22405 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 53.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00% NP_ISOPROPANOL, 0.034M NA/K REMARK 280 -PHOSPHATE PH5.0, 0.066M NA/K-PHOSPHATE PH 7.0, 5.00% GLYCEROL, REMARK 280 20.00% NP_PEG 4000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.82400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.36700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.82400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.36700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 SER A 145 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 SE CE REMARK 470 ARG A 14 CD NE CZ NH1 NH2 REMARK 470 LYS A 31 CD CE NZ REMARK 470 GLU A 36 CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 ARG A 64 CZ NH1 NH2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 LYS A 71 CE NZ REMARK 470 GLU A 107 CD OE1 OE2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 119 CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 LYS A 144 CB CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 ILE A 187 CG1 CD1 REMARK 470 LYS A 207 CE NZ REMARK 470 MSE B 1 CG SE CE REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 31 CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ARG B 64 CD NE CZ NH1 NH2 REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 ILE B 68 CG1 CG2 CD1 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 GLU B 107 CD OE1 OE2 REMARK 470 ARG B 108 CD NE CZ NH1 NH2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 LYS B 142 CE NZ REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 LYS B 144 CE NZ REMARK 470 LYS B 149 CE NZ REMARK 470 GLU B 192 CD OE1 OE2 REMARK 470 LYS B 207 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 32 CB CYS A 32 SG -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 19 52.33 -117.51 REMARK 500 GLU A 131 57.96 -91.77 REMARK 500 LEU A 177 74.56 60.58 REMARK 500 GLU B 131 43.03 -96.08 REMARK 500 LEU B 177 75.92 61.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 300 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 43 O REMARK 620 2 VAL A 97 O 156.4 REMARK 620 3 THR A 99 OG1 95.7 87.0 REMARK 620 4 HOH A 309 O 74.1 84.0 75.6 REMARK 620 5 HOH A 335 O 79.9 91.4 164.8 89.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283157 RELATED DB: TARGETDB DBREF 1VLM A 1 207 UNP Q9X119 Q9X119_THEMA 1 207 DBREF 1VLM B 1 207 UNP Q9X119 Q9X119_THEMA 1 207 SEQADV 1VLM MSE A -11 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM GLY A -10 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM SER A -9 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM ASP A -8 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM LYS A -7 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM ILE A -6 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS A -5 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS A -4 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS A -3 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS A -2 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS A -1 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS A 0 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM MSE A 1 UNP Q9X119 MET 1 MODIFIED RESIDUE SEQADV 1VLM MSE A 65 UNP Q9X119 MET 65 MODIFIED RESIDUE SEQADV 1VLM MSE A 96 UNP Q9X119 MET 96 MODIFIED RESIDUE SEQADV 1VLM MSE A 160 UNP Q9X119 MET 160 MODIFIED RESIDUE SEQADV 1VLM MSE A 163 UNP Q9X119 MET 163 MODIFIED RESIDUE SEQADV 1VLM MSE B -11 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM GLY B -10 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM SER B -9 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM ASP B -8 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM LYS B -7 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM ILE B -6 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS B -5 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS B -4 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS B -3 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS B -2 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS B -1 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM HIS B 0 UNP Q9X119 EXPRESSION TAG SEQADV 1VLM MSE B 1 UNP Q9X119 MET 1 MODIFIED RESIDUE SEQADV 1VLM MSE B 65 UNP Q9X119 MET 65 MODIFIED RESIDUE SEQADV 1VLM MSE B 96 UNP Q9X119 MET 96 MODIFIED RESIDUE SEQADV 1VLM MSE B 160 UNP Q9X119 MET 160 MODIFIED RESIDUE SEQADV 1VLM MSE B 163 UNP Q9X119 MET 163 MODIFIED RESIDUE SEQRES 1 A 219 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 219 TRP HIS ILE PHE GLU ARG PHE VAL ASN GLU TYR GLU ARG SEQRES 3 A 219 TRP PHE LEU VAL HIS ARG PHE ALA TYR LEU SER GLU LEU SEQRES 4 A 219 GLN ALA VAL LYS CYS LEU LEU PRO GLU GLY ARG GLY VAL SEQRES 5 A 219 GLU ILE GLY VAL GLY THR GLY ARG PHE ALA VAL PRO LEU SEQRES 6 A 219 LYS ILE LYS ILE GLY VAL GLU PRO SER GLU ARG MSE ALA SEQRES 7 A 219 GLU ILE ALA ARG LYS ARG GLY VAL PHE VAL LEU LYS GLY SEQRES 8 A 219 THR ALA GLU ASN LEU PRO LEU LYS ASP GLU SER PHE ASP SEQRES 9 A 219 PHE ALA LEU MSE VAL THR THR ILE CYS PHE VAL ASP ASP SEQRES 10 A 219 PRO GLU ARG ALA LEU LYS GLU ALA TYR ARG ILE LEU LYS SEQRES 11 A 219 LYS GLY GLY TYR LEU ILE VAL GLY ILE VAL ASP ARG GLU SEQRES 12 A 219 SER PHE LEU GLY ARG GLU TYR GLU LYS ASN LYS GLU LYS SEQRES 13 A 219 SER VAL PHE TYR LYS ASN ALA ARG PHE PHE SER THR GLU SEQRES 14 A 219 GLU LEU MSE ASP LEU MSE ARG LYS ALA GLY PHE GLU GLU SEQRES 15 A 219 PHE LYS VAL VAL GLN THR LEU PHE LYS HIS PRO SER GLU SEQRES 16 A 219 LEU SER GLU ILE GLU PRO VAL LYS GLU GLY TYR GLY GLU SEQRES 17 A 219 GLY ALA PHE VAL VAL ILE ARG GLY THR LYS LYS SEQRES 1 B 219 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 219 TRP HIS ILE PHE GLU ARG PHE VAL ASN GLU TYR GLU ARG SEQRES 3 B 219 TRP PHE LEU VAL HIS ARG PHE ALA TYR LEU SER GLU LEU SEQRES 4 B 219 GLN ALA VAL LYS CYS LEU LEU PRO GLU GLY ARG GLY VAL SEQRES 5 B 219 GLU ILE GLY VAL GLY THR GLY ARG PHE ALA VAL PRO LEU SEQRES 6 B 219 LYS ILE LYS ILE GLY VAL GLU PRO SER GLU ARG MSE ALA SEQRES 7 B 219 GLU ILE ALA ARG LYS ARG GLY VAL PHE VAL LEU LYS GLY SEQRES 8 B 219 THR ALA GLU ASN LEU PRO LEU LYS ASP GLU SER PHE ASP SEQRES 9 B 219 PHE ALA LEU MSE VAL THR THR ILE CYS PHE VAL ASP ASP SEQRES 10 B 219 PRO GLU ARG ALA LEU LYS GLU ALA TYR ARG ILE LEU LYS SEQRES 11 B 219 LYS GLY GLY TYR LEU ILE VAL GLY ILE VAL ASP ARG GLU SEQRES 12 B 219 SER PHE LEU GLY ARG GLU TYR GLU LYS ASN LYS GLU LYS SEQRES 13 B 219 SER VAL PHE TYR LYS ASN ALA ARG PHE PHE SER THR GLU SEQRES 14 B 219 GLU LEU MSE ASP LEU MSE ARG LYS ALA GLY PHE GLU GLU SEQRES 15 B 219 PHE LYS VAL VAL GLN THR LEU PHE LYS HIS PRO SER GLU SEQRES 16 B 219 LEU SER GLU ILE GLU PRO VAL LYS GLU GLY TYR GLY GLU SEQRES 17 B 219 GLY ALA PHE VAL VAL ILE ARG GLY THR LYS LYS MODRES 1VLM MSE A 1 MET SELENOMETHIONINE MODRES 1VLM MSE A 65 MET SELENOMETHIONINE MODRES 1VLM MSE A 96 MET SELENOMETHIONINE MODRES 1VLM MSE A 160 MET SELENOMETHIONINE MODRES 1VLM MSE A 163 MET SELENOMETHIONINE MODRES 1VLM MSE B 1 MET SELENOMETHIONINE MODRES 1VLM MSE B 65 MET SELENOMETHIONINE MODRES 1VLM MSE B 96 MET SELENOMETHIONINE MODRES 1VLM MSE B 160 MET SELENOMETHIONINE MODRES 1VLM MSE B 163 MET SELENOMETHIONINE HET MSE A 1 6 HET MSE A 65 8 HET MSE A 96 8 HET MSE A 160 8 HET MSE A 163 8 HET MSE B 1 5 HET MSE B 65 8 HET MSE B 96 8 HET MSE B 160 8 HET MSE B 163 8 HET NA A 300 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NA NA 1+ FORMUL 4 HOH *109(H2 O) HELIX 1 1 TRP A 2 PHE A 8 1 7 HELIX 2 2 PHE A 8 HIS A 19 1 12 HELIX 3 3 HIS A 19 LEU A 34 1 16 HELIX 4 4 PHE A 49 LYS A 54 1 6 HELIX 5 5 SER A 62 ARG A 72 1 11 HELIX 6 6 THR A 99 VAL A 103 5 5 HELIX 7 7 ASP A 105 ILE A 116 1 12 HELIX 8 8 SER A 132 ASN A 141 1 10 HELIX 9 9 SER A 155 ALA A 166 1 12 HELIX 10 10 HIS A 180 LEU A 184 5 5 HELIX 11 11 TRP B 2 PHE B 8 1 7 HELIX 12 12 PHE B 8 HIS B 19 1 12 HELIX 13 13 HIS B 19 LEU B 34 1 16 HELIX 14 14 PHE B 49 LYS B 54 1 6 HELIX 15 15 SER B 62 ARG B 72 1 11 HELIX 16 16 THR B 99 VAL B 103 5 5 HELIX 17 17 ASP B 105 ILE B 116 1 12 HELIX 18 18 SER B 132 ASN B 141 1 10 HELIX 19 19 LYS B 142 SER B 145 5 4 HELIX 20 20 SER B 155 GLY B 167 1 13 HELIX 21 21 HIS B 180 LEU B 184 5 5 SHEET 1 A 8 PHE A 75 LYS A 78 0 SHEET 2 A 8 ILE A 57 GLU A 60 1 N GLY A 58 O LEU A 77 SHEET 3 A 8 GLY A 39 ILE A 42 1 N GLU A 41 O VAL A 59 SHEET 4 A 8 PHE A 91 VAL A 97 1 O LEU A 95 N ILE A 42 SHEET 5 A 8 LEU A 117 VAL A 128 1 O ILE A 124 N ALA A 94 SHEET 6 A 8 PHE A 199 THR A 205 -1 O VAL A 200 N ILE A 127 SHEET 7 A 8 GLU A 169 THR A 176 -1 N GLU A 169 O THR A 205 SHEET 8 A 8 LYS A 191 GLU A 192 -1 O LYS A 191 N GLN A 175 SHEET 1 B 8 PHE B 75 LEU B 77 0 SHEET 2 B 8 ILE B 57 VAL B 59 1 N GLY B 58 O LEU B 77 SHEET 3 B 8 GLY B 39 ILE B 42 1 N GLU B 41 O VAL B 59 SHEET 4 B 8 PHE B 91 VAL B 97 1 O LEU B 95 N ILE B 42 SHEET 5 B 8 LEU B 117 VAL B 128 1 O ILE B 124 N ALA B 94 SHEET 6 B 8 PHE B 199 THR B 205 -1 O ILE B 202 N VAL B 125 SHEET 7 B 8 GLU B 169 THR B 176 -1 N GLU B 169 O THR B 205 SHEET 8 B 8 LYS B 191 GLU B 192 -1 O LYS B 191 N GLN B 175 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N TRP A 2 1555 1555 1.33 LINK C ARG A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N ALA A 66 1555 1555 1.32 LINK C LEU A 95 N MSE A 96 1555 1555 1.32 LINK C MSE A 96 N VAL A 97 1555 1555 1.32 LINK C LEU A 159 N MSE A 160 1555 1555 1.31 LINK C MSE A 160 N ASP A 161 1555 1555 1.33 LINK C LEU A 162 N MSE A 163 1555 1555 1.34 LINK C MSE A 163 N ARG A 164 1555 1555 1.32 LINK C MSE B 1 N TRP B 2 1555 1555 1.34 LINK C ARG B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N ALA B 66 1555 1555 1.33 LINK C LEU B 95 N MSE B 96 1555 1555 1.32 LINK C MSE B 96 N VAL B 97 1555 1555 1.33 LINK C LEU B 159 N MSE B 160 1555 1555 1.32 LINK C MSE B 160 N ASP B 161 1555 1555 1.33 LINK C LEU B 162 N MSE B 163 1555 1555 1.32 LINK C MSE B 163 N ARG B 164 1555 1555 1.34 LINK O GLY A 43 NA NA A 300 1555 1555 2.47 LINK O VAL A 97 NA NA A 300 1555 1555 2.44 LINK OG1 THR A 99 NA NA A 300 1555 1555 2.32 LINK NA NA A 300 O HOH A 309 1555 1555 2.70 LINK NA NA A 300 O HOH A 335 1555 1555 2.47 SITE 1 AC1 6 GLY A 43 VAL A 97 THR A 98 THR A 99 SITE 2 AC1 6 HOH A 309 HOH A 335 CRYST1 65.648 70.734 93.922 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010647 0.00000