HEADER TRANSLATION 21-DEC-04 1YBY TITLE CONSERVED HYPOTHETICAL PROTEIN CTH-95 FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION ELONGATION FACTOR P; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EF-P, TRANSLATION INITIATION FACTOR 5A, EIF-5A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 ATCC: 27405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CONSERVED HYPOTHETICAL PROTEIN, CLOSTRIDIUM THERMOCELLUM, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY KEYWDS 3 FOR STRUCTURAL GENOMICS, SECSG, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHAO,W.ZHOU,J.CHANG,J.HABEL,I.KATAEVA,H.XU,L.CHEN,D.LEE,J.NGUYEN, AUTHOR 2 S.-H.CHANG,P.HORANYI,Q.FLORENCE,W.TEMPEL,D.LIN,H.ZHANG,L.LJUNDAHL, AUTHOR 3 Z.-J.LIU,J.ROSE,B.-C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL AUTHOR 4 GENOMICS (SECSG) REVDAT 5 20-NOV-24 1YBY 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1YBY 1 REMARK REVDAT 3 24-FEB-09 1YBY 1 VERSN REVDAT 2 24-OCT-06 1YBY 1 KEYWDS JRNL REMARK MASTER REVDAT 1 01-FEB-05 1YBY 0 JRNL AUTH M.ZHAO,W.ZHOU,J.CHANG,J.HABEL,I.KATAEVA,H.XU,L.CHEN,D.LEE, JRNL AUTH 2 J.NGUYEN,S.-H.CHANG,P.HORANYI,Q.FLORENCE,W.TEMPEL,D.LIN, JRNL AUTH 3 H.ZHANG,L.LJUNDAHL,Z.-J.LIU,J.ROSE,B.-C.WANG JRNL TITL CONSERVED HYPOTHETICAL PROTEIN CTH-95 FROM CLOSTRIDIUM JRNL TITL 2 THERMOCELLUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.093 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2497 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65500 REMARK 3 B22 (A**2) : 0.46700 REMARK 3 B33 (A**2) : -0.13100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2778 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2528 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3758 ; 1.408 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5872 ; 3.764 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 6.337 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;34.758 ;25.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;12.822 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;26.603 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3089 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 539 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 399 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2216 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1323 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1348 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1753 ; 0.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 724 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2839 ; 1.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2373 ; 0.814 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1025 ; 2.439 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1804 ; 0.000 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 919 ; 3.774 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3499 ; 1.742 ; 4.500 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAS REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M DIPOTASSIUM HYDROGEN PHOSPHATE, REMARK 280 0.1M HEPES, PH 7.6, SITTING DROP, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.45750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.73800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.45750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.73800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -29 REMARK 465 GLY A -28 REMARK 465 SER A -27 REMARK 465 SER A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 GLY A -17 REMARK 465 LEU A -16 REMARK 465 VAL A -15 REMARK 465 PRO A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 GLN A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 137 REMARK 465 PRO A 138 REMARK 465 GLY A 139 REMARK 465 PHE A 140 REMARK 465 LYS A 141 REMARK 465 GLY A 142 REMARK 465 ASP A 143 REMARK 465 MSE B -29 REMARK 465 GLY B -28 REMARK 465 SER B -27 REMARK 465 SER B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 GLY B -17 REMARK 465 LEU B -16 REMARK 465 VAL B -15 REMARK 465 PRO B -14 REMARK 465 ARG B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 GLN B -10 REMARK 465 SER B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 LYS B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 LEU B 0 REMARK 465 LYS B 141 REMARK 465 GLY B 142 REMARK 465 ASP B 143 REMARK 465 THR B 144 REMARK 465 ALA B 145 REMARK 465 THR B 146 REMARK 465 GLY B 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 CG2 CD1 REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 HIS A 64 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 67 NE CZ NH1 NH2 REMARK 470 LYS A 68 CD CE NZ REMARK 470 ASP A 76 CB CG OD1 OD2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 LYS A 106 CE NZ REMARK 470 LYS A 161 NZ REMARK 470 LYS A 168 CE NZ REMARK 470 ARG A 177 CZ NH1 NH2 REMARK 470 ILE B 2 CG1 CD1 REMARK 470 LYS B 8 NZ REMARK 470 GLN B 18 CB CG CD OE1 NE2 REMARK 470 LYS B 29 CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 40 CE NZ REMARK 470 LYS B 42 CE NZ REMARK 470 ILE B 50 CG2 CD1 REMARK 470 GLU B 51 CD OE1 OE2 REMARK 470 LYS B 59 CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 LYS B 95 CD CE NZ REMARK 470 LYS B 117 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 70 CG - SE - CE ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 73 -64.33 -95.13 REMARK 500 LYS A 117 44.48 39.88 REMARK 500 LEU B 73 -72.45 -89.91 REMARK 500 HIS B 116 -74.44 -99.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CTH-95 RELATED DB: TARGETDB DBREF 1YBY A 1 185 GB 48857307 ZP_00311326 1 185 DBREF 1YBY B 1 185 GB 48857307 ZP_00311326 1 185 SEQADV 1YBY MSE A -29 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -28 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -27 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -26 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -25 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -24 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -23 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -22 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -21 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -20 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -19 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -18 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -17 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU A -16 GB 48857307 CLONING ARTIFACT SEQADV 1YBY VAL A -15 GB 48857307 CLONING ARTIFACT SEQADV 1YBY PRO A -14 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ARG A -13 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -12 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -11 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLN A -10 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -9 GB 48857307 CLONING ARTIFACT SEQADV 1YBY THR A -8 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -7 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU A -6 GB 48857307 CLONING ARTIFACT SEQADV 1YBY TYR A -5 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS A -4 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS A -3 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ALA A -2 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -1 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU A 0 GB 48857307 CLONING ARTIFACT SEQADV 1YBY MSE A 1 GB 48857307 MET 1 MODIFIED RESIDUE SEQADV 1YBY MSE A 60 GB 48857307 MET 60 MODIFIED RESIDUE SEQADV 1YBY MSE A 70 GB 48857307 MET 70 MODIFIED RESIDUE SEQADV 1YBY MSE A 83 GB 48857307 MET 83 MODIFIED RESIDUE SEQADV 1YBY MSE A 182 GB 48857307 MET 182 MODIFIED RESIDUE SEQADV 1YBY MSE B -29 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -28 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -27 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -26 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -25 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -24 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -23 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -22 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -21 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -20 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -19 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -18 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -17 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU B -16 GB 48857307 CLONING ARTIFACT SEQADV 1YBY VAL B -15 GB 48857307 CLONING ARTIFACT SEQADV 1YBY PRO B -14 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ARG B -13 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -12 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -11 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLN B -10 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -9 GB 48857307 CLONING ARTIFACT SEQADV 1YBY THR B -8 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -7 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU B -6 GB 48857307 CLONING ARTIFACT SEQADV 1YBY TYR B -5 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS B -4 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS B -3 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ALA B -2 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -1 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU B 0 GB 48857307 CLONING ARTIFACT SEQADV 1YBY MSE B 1 GB 48857307 MET 1 MODIFIED RESIDUE SEQADV 1YBY MSE B 60 GB 48857307 MET 60 MODIFIED RESIDUE SEQADV 1YBY MSE B 70 GB 48857307 MET 70 MODIFIED RESIDUE SEQADV 1YBY MSE B 83 GB 48857307 MET 83 MODIFIED RESIDUE SEQADV 1YBY MSE B 182 GB 48857307 MET 182 MODIFIED RESIDUE SEQRES 1 A 215 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 215 LEU VAL PRO ARG GLY SER GLN SER THR SER LEU TYR LYS SEQRES 3 A 215 LYS ALA GLY LEU MSE ILE SER ALA GLY ASP PHE LYS ASN SEQRES 4 A 215 GLY VAL THR PHE GLU LEU ASP GLY GLN ILE PHE GLN VAL SEQRES 5 A 215 ILE GLU PHE GLN HIS VAL LYS PRO GLY LYS GLY ALA ALA SEQRES 6 A 215 PHE VAL ARG THR LYS LEU LYS ASN ILE VAL THR GLY ALA SEQRES 7 A 215 THR ILE GLU LYS THR PHE ASN PRO THR ASP LYS MSE PRO SEQRES 8 A 215 LYS ALA HIS ILE GLU ARG LYS ASP MSE GLN TYR LEU TYR SEQRES 9 A 215 ASN ASP GLY ASP LEU TYR TYR PHE MSE ASP THR GLU THR SEQRES 10 A 215 PHE GLU GLN LEU PRO LEU GLY LYS ASP LYS ILE GLY ASP SEQRES 11 A 215 ALA LEU LYS PHE VAL LYS GLU ASN GLU ILE VAL LYS VAL SEQRES 12 A 215 LEU SER HIS LYS GLY ASN VAL PHE GLY ILE GLU PRO PRO SEQRES 13 A 215 ASN PHE VAL GLU LEU GLU VAL THR ASP THR GLU PRO GLY SEQRES 14 A 215 PHE LYS GLY ASP THR ALA THR GLY ALA THR LYS PRO ALA SEQRES 15 A 215 ILE VAL GLU THR GLY ALA SER ILE LYS VAL PRO LEU PHE SEQRES 16 A 215 VAL ASN LYS GLY ASP ILE ILE ARG ILE ASP THR ARG THR SEQRES 17 A 215 GLY GLU TYR MSE GLU ARG VAL SEQRES 1 B 215 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 215 LEU VAL PRO ARG GLY SER GLN SER THR SER LEU TYR LYS SEQRES 3 B 215 LYS ALA GLY LEU MSE ILE SER ALA GLY ASP PHE LYS ASN SEQRES 4 B 215 GLY VAL THR PHE GLU LEU ASP GLY GLN ILE PHE GLN VAL SEQRES 5 B 215 ILE GLU PHE GLN HIS VAL LYS PRO GLY LYS GLY ALA ALA SEQRES 6 B 215 PHE VAL ARG THR LYS LEU LYS ASN ILE VAL THR GLY ALA SEQRES 7 B 215 THR ILE GLU LYS THR PHE ASN PRO THR ASP LYS MSE PRO SEQRES 8 B 215 LYS ALA HIS ILE GLU ARG LYS ASP MSE GLN TYR LEU TYR SEQRES 9 B 215 ASN ASP GLY ASP LEU TYR TYR PHE MSE ASP THR GLU THR SEQRES 10 B 215 PHE GLU GLN LEU PRO LEU GLY LYS ASP LYS ILE GLY ASP SEQRES 11 B 215 ALA LEU LYS PHE VAL LYS GLU ASN GLU ILE VAL LYS VAL SEQRES 12 B 215 LEU SER HIS LYS GLY ASN VAL PHE GLY ILE GLU PRO PRO SEQRES 13 B 215 ASN PHE VAL GLU LEU GLU VAL THR ASP THR GLU PRO GLY SEQRES 14 B 215 PHE LYS GLY ASP THR ALA THR GLY ALA THR LYS PRO ALA SEQRES 15 B 215 ILE VAL GLU THR GLY ALA SER ILE LYS VAL PRO LEU PHE SEQRES 16 B 215 VAL ASN LYS GLY ASP ILE ILE ARG ILE ASP THR ARG THR SEQRES 17 B 215 GLY GLU TYR MSE GLU ARG VAL MODRES 1YBY MSE A 1 MET SELENOMETHIONINE MODRES 1YBY MSE A 60 MET SELENOMETHIONINE MODRES 1YBY MSE A 70 MET SELENOMETHIONINE MODRES 1YBY MSE A 83 MET SELENOMETHIONINE MODRES 1YBY MSE A 182 MET SELENOMETHIONINE MODRES 1YBY MSE B 1 MET SELENOMETHIONINE MODRES 1YBY MSE B 60 MET SELENOMETHIONINE MODRES 1YBY MSE B 70 MET SELENOMETHIONINE MODRES 1YBY MSE B 83 MET SELENOMETHIONINE MODRES 1YBY MSE B 182 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 60 8 HET MSE A 70 8 HET MSE A 83 8 HET MSE A 182 8 HET MSE B 1 8 HET MSE B 60 8 HET MSE B 70 8 HET MSE B 83 8 HET MSE B 182 8 HET UNX A1004 1 HET UNX A1005 1 HET UNX B1001 1 HET UNX B1002 1 HET UNX B1003 1 HETNAM MSE SELENOMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 UNX 5(X) FORMUL 8 HOH *198(H2 O) HELIX 1 1 GLY A 5 PHE A 7 5 3 HELIX 2 2 LYS A 95 GLY A 99 1 5 HELIX 3 3 GLY B 5 PHE B 7 5 3 HELIX 4 4 LYS B 95 GLY B 99 1 5 SHEET 1 A 2 ILE A 2 SER A 3 0 SHEET 2 A 2 LYS A 59 MSE A 60 -1 O MSE A 60 N ILE A 2 SHEET 1 B 4 THR A 12 LEU A 15 0 SHEET 2 B 4 GLN A 18 VAL A 28 -1 O PHE A 20 N PHE A 13 SHEET 3 B 4 PHE A 36 ASN A 43 -1 O PHE A 36 N VAL A 28 SHEET 4 B 4 THR A 49 PHE A 54 -1 O ILE A 50 N LEU A 41 SHEET 1 C 5 GLN A 90 GLY A 94 0 SHEET 2 C 5 LEU A 79 MSE A 83 -1 N TYR A 80 O LEU A 93 SHEET 3 C 5 GLU A 66 ASP A 76 -1 N TYR A 74 O TYR A 81 SHEET 4 C 5 ILE A 110 HIS A 116 -1 O VAL A 113 N LYS A 68 SHEET 5 C 5 ASN A 119 GLU A 124 -1 O GLY A 122 N LEU A 114 SHEET 1 D 5 SER A 159 PRO A 163 0 SHEET 2 D 5 THR A 149 VAL A 154 -1 N LYS A 150 O VAL A 162 SHEET 3 D 5 PHE A 128 ASP A 135 -1 N ASP A 135 O ILE A 153 SHEET 4 D 5 ILE A 171 ASP A 175 -1 O ILE A 172 N LEU A 131 SHEET 5 D 5 GLU A 180 ARG A 184 -1 O GLU A 183 N ARG A 173 SHEET 1 E 2 ILE B 2 SER B 3 0 SHEET 2 E 2 LYS B 59 MSE B 60 -1 O MSE B 60 N ILE B 2 SHEET 1 F 4 THR B 12 GLU B 14 0 SHEET 2 F 4 ILE B 19 VAL B 28 -1 O PHE B 20 N PHE B 13 SHEET 3 F 4 PHE B 36 ASN B 43 -1 O LYS B 40 N GLU B 24 SHEET 4 F 4 THR B 49 PHE B 54 -1 O LYS B 52 N THR B 39 SHEET 1 G 5 GLN B 90 GLY B 94 0 SHEET 2 G 5 LEU B 79 MSE B 83 -1 N TYR B 80 O LEU B 93 SHEET 3 G 5 GLU B 66 ASP B 76 -1 N LEU B 73 O TYR B 81 SHEET 4 G 5 ILE B 110 SER B 115 -1 O SER B 115 N GLU B 66 SHEET 5 G 5 VAL B 120 GLU B 124 -1 O GLU B 124 N LYS B 112 SHEET 1 H 5 SER B 159 PRO B 163 0 SHEET 2 H 5 THR B 149 VAL B 154 -1 N LYS B 150 O VAL B 162 SHEET 3 H 5 PHE B 128 THR B 136 -1 N ASP B 135 O ILE B 153 SHEET 4 H 5 ILE B 171 ASP B 175 -1 O ILE B 172 N LEU B 131 SHEET 5 H 5 GLU B 180 ARG B 184 -1 O GLU B 183 N ARG B 173 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C LYS A 59 N MSE A 60 1555 1555 1.34 LINK C MSE A 60 N PRO A 61 1555 1555 1.35 LINK C ASP A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N GLN A 71 1555 1555 1.32 LINK C PHE A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N ASP A 84 1555 1555 1.33 LINK C TYR A 181 N MSE A 182 1555 1555 1.32 LINK C MSE A 182 N GLU A 183 1555 1555 1.32 LINK C MSE B 1 N ILE B 2 1555 1555 1.34 LINK C LYS B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N PRO B 61 1555 1555 1.35 LINK C ASP B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N GLN B 71 1555 1555 1.32 LINK C PHE B 82 N MSE B 83 1555 1555 1.32 LINK C MSE B 83 N ASP B 84 1555 1555 1.34 LINK C TYR B 181 N MSE B 182 1555 1555 1.32 LINK C MSE B 182 N GLU B 183 1555 1555 1.32 SITE 1 AC1 5 GLU A 89 GLN A 90 UNX A1004 PHE B 165 SITE 2 AC1 5 ASN B 167 SITE 1 AC2 2 LYS B 106 GLU B 107 SITE 1 AC3 1 GLY B 17 SITE 1 AC4 3 GLU A 89 GLN A 90 UNX B1001 SITE 1 AC5 1 ARG A 173 CRYST1 114.915 55.476 88.462 90.00 120.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008700 0.000000 0.005200 0.00000 SCALE2 0.000000 0.018000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013200 0.00000