HEADER OXIDOREDUCTASE 14-FEB-05 1YV1 TITLE FULLY REDUCED STATE OF NIGERYTHRIN (ALL FERROUS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIGERYTHRIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS SUBSP. VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 ATCC: 29579; SOURCE 6 GENE: NGR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RUBRERYTHRIN, RUBREDOXIN, HEMERYTHRIN, ELECTRON TRANSFER, PEROXIDASE, KEYWDS 2 DIIRON CENTER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.B.IYER,R.SILAGHI-DUMITRESCU,D.M.KURTZ,W.N.LANZILOTTA REVDAT 3 13-JUL-11 1YV1 1 VERSN REVDAT 2 24-FEB-09 1YV1 1 VERSN REVDAT 1 21-JUN-05 1YV1 0 JRNL AUTH R.B.IYER,R.SILAGHI-DUMITRESCU,D.M.KURTZ,W.N.LANZILOTTA JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURES OF DESULFOVIBRIO VULGARIS JRNL TITL 2 (HILDENBOROUGH) NIGERYTHRIN: FACILE, REDOX-DEPENDENT IRON JRNL TITL 3 MOVEMENT, DOMAIN INTERFACE VARIABILITY, AND PEROXIDASE JRNL TITL 4 ACTIVITY IN THE RUBRERYTHRINS. JRNL REF J.BIOL.INORG.CHEM. V. 10 407 2005 JRNL REFN ISSN 0949-8257 JRNL PMID 15895271 JRNL DOI 10.1007/S00775-005-0650-8 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1484775.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 64794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3292 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9588 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 528 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 617 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.17000 REMARK 3 B22 (A**2) : -1.04000 REMARK 3 B33 (A**2) : -2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 4.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.420 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.440 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 48.38 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : FMN_FEO.PARAM REMARK 3 PARAMETER FILE 3 : EGL.PAR REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : FMN_FEO.TOP REMARK 3 TOPOLOGY FILE 3 : EGL.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-05. REMARK 100 THE RCSB ID CODE IS RCSB031950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 118 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64794 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 23.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2 20% PEG 3350, PH 7.3, REMARK 280 LIQUID DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.38650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.45250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.45350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.45250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.38650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.45350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMETRIC UNIT IS MOST LIKELY THE BIOLOGICAL ASSEMBLY REMARK 300 (DIMER) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 GLU B 86 CD OE1 OE2 REMARK 470 LYS B 170 CD CE NZ REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 88 85.09 -157.36 REMARK 500 TYR A 102 -158.39 -125.43 REMARK 500 ASP A 121 -73.45 -125.61 REMARK 500 ASP A 185 65.22 -68.82 REMARK 500 TYR B 59 76.92 -101.12 REMARK 500 TYR B 102 -149.98 -109.25 REMARK 500 ASP B 121 -75.46 -129.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 517 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH A 548 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH B 599 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH B 601 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 602 DISTANCE = 5.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 40 OE1 REMARK 620 2 GLU A 40 OE2 57.6 REMARK 620 3 GLU A 73 OE1 86.9 144.1 REMARK 620 4 HIS A 76 ND1 102.4 101.2 90.6 REMARK 620 5 GLU A 149 OE2 140.5 85.9 126.0 98.7 REMARK 620 6 HOH A 304 O 77.9 77.0 91.6 177.8 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE2 REMARK 620 2 GLU A 115 OE1 147.5 REMARK 620 3 GLU A 115 OE2 93.0 57.0 REMARK 620 4 GLU A 149 OE1 123.1 84.8 141.6 REMARK 620 5 HIS A 152 ND1 98.2 98.4 99.0 89.2 REMARK 620 6 HOH A 356 O 79.8 80.2 74.3 97.6 172.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 174 SG REMARK 620 2 CYS A 177 SG 112.9 REMARK 620 3 CYS A 189 SG 113.7 96.1 REMARK 620 4 CYS A 192 SG 100.8 123.8 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 40 OE1 REMARK 620 2 GLU B 40 OE2 59.6 REMARK 620 3 GLU B 73 OE1 88.6 148.1 REMARK 620 4 HIS B 76 ND1 101.6 101.0 86.8 REMARK 620 5 GLU B 149 OE2 147.7 90.6 119.7 95.7 REMARK 620 6 HOH B 304 O 83.5 86.1 88.1 172.7 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 73 OE2 REMARK 620 2 GLU B 115 OE1 149.3 REMARK 620 3 GLU B 115 OE2 94.6 57.4 REMARK 620 4 GLU B 149 OE1 122.5 83.9 141.3 REMARK 620 5 HIS B 152 ND1 97.2 98.8 97.7 89.0 REMARK 620 6 HOH B 318 O 78.4 82.4 76.4 98.8 172.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 174 SG REMARK 620 2 CYS B 177 SG 111.8 REMARK 620 3 CYS B 189 SG 114.0 96.2 REMARK 620 4 CYS B 192 SG 99.7 124.3 111.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YUX RELATED DB: PDB REMARK 900 RELATED ID: 1YUZ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 MUTATION WAS INTRODUCED DURING CLONING PROCESS. DBREF 1YV1 A 1 202 UNP P30820 NIGY_DESVH 1 202 DBREF 1YV1 B 1 202 UNP P30820 NIGY_DESVH 1 202 SEQADV 1YV1 SER A 25 UNP P30820 ALA 25 SEE REMARK 999 SEQADV 1YV1 SER B 25 UNP P30820 ALA 25 SEE REMARK 999 SEQRES 1 A 202 MET LYS VAL ARG ALA GLN VAL PRO THR VAL LYS ASN ALA SEQRES 2 A 202 THR ASN PHE ASN MET VAL ALA ASP SER LYS THR SER VAL SEQRES 3 A 202 GLY SER THR LEU GLU ASN LEU LYS ALA ALA ILE ALA GLY SEQRES 4 A 202 GLU THR GLY ALA HIS ALA LYS TYR THR ALA PHE ALA LYS SEQRES 5 A 202 ALA ALA ARG GLU GLN GLY TYR GLU GLN ILE ALA ARG LEU SEQRES 6 A 202 PHE GLU ALA THR ALA ALA ALA GLU LEU ILE HIS ILE GLY SEQRES 7 A 202 LEU GLU TYR ALA LEU VAL ALA GLU MET GLU PRO GLY TYR SEQRES 8 A 202 GLU LYS PRO THR VAL ALA ALA PRO SER ALA TYR SER CYS SEQRES 9 A 202 ASP LEU ASN LEU ILE SER GLY ALA ASN GLY GLU ILE TYR SEQRES 10 A 202 GLU THR SER ASP MET TYR PRO ALA PHE ILE ARG LYS ALA SEQRES 11 A 202 GLN GLU GLU GLY ASN SER LYS ALA VAL HIS VAL PHE THR SEQRES 12 A 202 ARG ALA LYS LEU ALA GLU SER VAL HIS ALA GLU ARG TYR SEQRES 13 A 202 LEU ALA ALA TYR ASN ASP ILE ASP ALA PRO ASP ASP ASP SEQRES 14 A 202 LYS PHE HIS LEU CYS PRO ILE CYS GLY TYR ILE HIS LYS SEQRES 15 A 202 GLY GLU ASP PHE GLU LYS CYS PRO ILE CYS PHE ARG PRO SEQRES 16 A 202 LYS ASP THR PHE THR ALA TYR SEQRES 1 B 202 MET LYS VAL ARG ALA GLN VAL PRO THR VAL LYS ASN ALA SEQRES 2 B 202 THR ASN PHE ASN MET VAL ALA ASP SER LYS THR SER VAL SEQRES 3 B 202 GLY SER THR LEU GLU ASN LEU LYS ALA ALA ILE ALA GLY SEQRES 4 B 202 GLU THR GLY ALA HIS ALA LYS TYR THR ALA PHE ALA LYS SEQRES 5 B 202 ALA ALA ARG GLU GLN GLY TYR GLU GLN ILE ALA ARG LEU SEQRES 6 B 202 PHE GLU ALA THR ALA ALA ALA GLU LEU ILE HIS ILE GLY SEQRES 7 B 202 LEU GLU TYR ALA LEU VAL ALA GLU MET GLU PRO GLY TYR SEQRES 8 B 202 GLU LYS PRO THR VAL ALA ALA PRO SER ALA TYR SER CYS SEQRES 9 B 202 ASP LEU ASN LEU ILE SER GLY ALA ASN GLY GLU ILE TYR SEQRES 10 B 202 GLU THR SER ASP MET TYR PRO ALA PHE ILE ARG LYS ALA SEQRES 11 B 202 GLN GLU GLU GLY ASN SER LYS ALA VAL HIS VAL PHE THR SEQRES 12 B 202 ARG ALA LYS LEU ALA GLU SER VAL HIS ALA GLU ARG TYR SEQRES 13 B 202 LEU ALA ALA TYR ASN ASP ILE ASP ALA PRO ASP ASP ASP SEQRES 14 B 202 LYS PHE HIS LEU CYS PRO ILE CYS GLY TYR ILE HIS LYS SEQRES 15 B 202 GLY GLU ASP PHE GLU LYS CYS PRO ILE CYS PHE ARG PRO SEQRES 16 B 202 LYS ASP THR PHE THR ALA TYR HET FE2 A 301 1 HET FE2 A 302 1 HET FE2 A 303 1 HET FE2 B 301 1 HET FE2 B 302 1 HET FE2 B 303 1 HETNAM FE2 FE (II) ION FORMUL 3 FE2 6(FE 2+) FORMUL 9 HOH *617(H2 O) HELIX 1 1 SER A 28 GLN A 57 1 30 HELIX 2 2 TYR A 59 GLU A 88 1 30 HELIX 3 3 SER A 103 ASP A 121 1 19 HELIX 4 4 ASP A 121 GLU A 133 1 13 HELIX 5 5 ASN A 135 ASP A 162 1 28 HELIX 6 6 PRO A 195 PHE A 199 5 5 HELIX 7 7 SER B 28 GLN B 57 1 30 HELIX 8 8 TYR B 59 GLU B 88 1 30 HELIX 9 9 SER B 103 ASP B 121 1 19 HELIX 10 10 ASP B 121 GLU B 133 1 13 HELIX 11 11 ASN B 135 ASP B 162 1 28 HELIX 12 12 PRO B 195 PHE B 199 5 5 SHEET 1 A 3 ILE A 180 LYS A 182 0 SHEET 2 A 3 PHE A 171 LEU A 173 -1 N HIS A 172 O HIS A 181 SHEET 3 A 3 THR A 200 TYR A 202 -1 O THR A 200 N LEU A 173 SHEET 1 B 3 ILE B 180 LYS B 182 0 SHEET 2 B 3 PHE B 171 LEU B 173 -1 N HIS B 172 O HIS B 181 SHEET 3 B 3 THR B 200 TYR B 202 -1 O THR B 200 N LEU B 173 LINK FE FE2 A 301 OE1 GLU A 40 1555 1555 2.25 LINK FE FE2 A 301 OE2 GLU A 40 1555 1555 2.31 LINK FE FE2 A 301 OE1 GLU A 73 1555 1555 2.10 LINK FE FE2 A 301 ND1 HIS A 76 1555 1555 2.15 LINK FE FE2 A 301 OE2 GLU A 149 1555 1555 2.05 LINK FE FE2 A 302 OE2 GLU A 73 1555 1555 2.03 LINK FE FE2 A 302 OE1 GLU A 115 1555 1555 2.19 LINK FE FE2 A 302 OE2 GLU A 115 1555 1555 2.38 LINK FE FE2 A 302 OE1 GLU A 149 1555 1555 2.11 LINK FE FE2 A 302 ND1 HIS A 152 1555 1555 2.25 LINK FE FE2 A 303 SG CYS A 174 1555 1555 2.33 LINK FE FE2 A 303 SG CYS A 177 1555 1555 2.30 LINK FE FE2 A 303 SG CYS A 189 1555 1555 2.33 LINK FE FE2 A 303 SG CYS A 192 1555 1555 2.29 LINK FE FE2 B 301 OE1 GLU B 40 1555 1555 2.19 LINK FE FE2 B 301 OE2 GLU B 40 1555 1555 2.22 LINK FE FE2 B 301 OE1 GLU B 73 1555 1555 2.17 LINK FE FE2 B 301 ND1 HIS B 76 1555 1555 2.26 LINK FE FE2 B 301 OE2 GLU B 149 1555 1555 2.06 LINK FE FE2 B 302 OE2 GLU B 73 1555 1555 2.08 LINK FE FE2 B 302 OE1 GLU B 115 1555 1555 2.24 LINK FE FE2 B 302 OE2 GLU B 115 1555 1555 2.31 LINK FE FE2 B 302 OE1 GLU B 149 1555 1555 2.12 LINK FE FE2 B 302 ND1 HIS B 152 1555 1555 2.24 LINK FE FE2 B 303 SG CYS B 174 1555 1555 2.34 LINK FE FE2 B 303 SG CYS B 177 1555 1555 2.33 LINK FE FE2 B 303 SG CYS B 189 1555 1555 2.34 LINK FE FE2 B 303 SG CYS B 192 1555 1555 2.28 LINK FE FE2 A 301 O HOH A 304 1555 1555 2.36 LINK FE FE2 A 302 O HOH A 356 1555 1555 2.26 LINK FE FE2 B 301 O HOH B 304 1555 1555 2.18 LINK FE FE2 B 302 O HOH B 318 1555 1555 2.21 SITE 1 AC1 5 GLU A 40 GLU A 73 HIS A 76 GLU A 149 SITE 2 AC1 5 HOH A 304 SITE 1 AC2 5 GLU A 73 GLU A 115 GLU A 149 HIS A 152 SITE 2 AC2 5 HOH A 356 SITE 1 AC3 4 CYS A 174 CYS A 177 CYS A 189 CYS A 192 SITE 1 AC4 5 GLU B 40 GLU B 73 HIS B 76 GLU B 149 SITE 2 AC4 5 HOH B 304 SITE 1 AC5 5 GLU B 73 GLU B 115 GLU B 149 HIS B 152 SITE 2 AC5 5 HOH B 318 SITE 1 AC6 4 CYS B 174 CYS B 177 CYS B 189 CYS B 192 CRYST1 46.773 72.907 118.905 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008410 0.00000