HEADER PROTEIN TRANSPORT, MEMBRANE PROTEIN 14-DEC-05 2FE0
TITLE NMR STRUCTURE OF SMP-1 (SMALL MYRISTOYLATED PROTEIN) FROM LEISHMANIA
TITLE 2 MAJOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SMALL MYRISTOYLATED PROTEIN 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: SMP-1;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR;
SOURCE 3 ORGANISM_TAXID: 5664;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-3
KEYWDS BETA SHEET, PROTEIN TRANSPORT, MEMBRANE PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 24
AUTHOR P.R.GOOLEY,H.D.T.MERTENS,D.TULL,M.J.MCCONVILLE
REVDAT 4 14-JUN-23 2FE0 1 REMARK
REVDAT 3 26-FEB-20 2FE0 1 REMARK SEQADV
REVDAT 2 24-FEB-09 2FE0 1 VERSN
REVDAT 1 05-DEC-06 2FE0 0
JRNL AUTH D.TULL,H.D.T.MERTENS,P.R.GOOLEY,M.J.MCCONVILLE
JRNL TITL FUNCTION, MEMBRANE TARGETTING AND STRUCTURE OF SMP-1
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CYANA-CANDID 1.0.7, XPLOR-NIH 2.11
REMARK 3 AUTHORS : T. HERMANN, P. GUNTERT, K. WUTHRICH (CYANA
REMARK 3 -CANDID), C.D. SCHWEITERS, J. KUSZEWSKI, N.
REMARK 3 TJANDRA, G.M. CLORE (XPLOR-NIH)
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 1671 NOE-DERIVED DISTANCE CONSTRIANTS,
REMARK 3 82 DIHEDRAL ANGLE CONSTRAINTS
REMARK 4
REMARK 4 2FE0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05.
REMARK 100 THE DEPOSITION ID IS D_1000035763.
REMARK 210
REMARK 210 EXPERIMENTAL DETAILS
REMARK 210 EXPERIMENT TYPE : NMR
REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298
REMARK 210 PH : 6.8; 6.8; 6.9
REMARK 210 IONIC STRENGTH : 50MM; 50MM; 50MM
REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT
REMARK 210 SAMPLE CONTENTS : 1MM SMP-1 U-15N, 13C; 50MM
REMARK 210 PHOSPHATE; 5MM DTT; 90% H2O, 10%
REMARK 210 D2O; 1MM SMP-1 U-15N, 13C; 50MM
REMARK 210 PHOSPHATE; 5MM DTT; 100% D2O;
REMARK 210 1MM SMP-1 U-15N; 50MM PHOSPHATE;
REMARK 210 5MM DTT; 90% H2O, 10% D2O
REMARK 210
REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N
REMARK 210 -SEPARATED_NOESY; HNHA; HNHB;
REMARK 210 HACACB; 13C'-{13CG} SPIN-ECHO
REMARK 210 DIFFERENCE 15N HSQC; 15N-{13CG}
REMARK 210 SPIN-ECHO DIFFERENCE 15N HSQC
REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ
REMARK 210 SPECTROMETER MODEL : INOVA
REMARK 210 SPECTROMETER MANUFACTURER : VARIAN
REMARK 210
REMARK 210 STRUCTURE DETERMINATION.
REMARK 210 SOFTWARE USED : NMRPIPE 2.3, NMRVIEW 5.2.2
REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS
REMARK 210
REMARK 210 CONFORMERS, NUMBER CALCULATED : 100
REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24
REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SMALLEST CONSTRAINT
REMARK 210 VIOLATIONS, MOST FAVOURABLE NON-
REMARK 210 BOND ENERGIES
REMARK 210
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1
REMARK 210
REMARK 210 REMARK: NULL
REMARK 215
REMARK 215 NMR STUDY
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION
REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON
REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465 MODELS 1-24
REMARK 465 RES C SSSEQI
REMARK 465 GLY A -4
REMARK 465 PRO A -3
REMARK 465 LEU A -2
REMARK 465 GLY A -1
REMARK 465 SER A 0
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O GLY A 2 H GLY A 4 1.50
REMARK 500 OD1 ASP A 114 H ALA A 115 1.54
REMARK 500 O THR A 27 H ARG A 39 1.56
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 1 CYS A 3 -56.70 65.66
REMARK 500 1 GLU A 8 75.40 42.89
REMARK 500 1 SER A 10 102.11 -175.30
REMARK 500 1 SER A 11 -131.83 41.44
REMARK 500 1 VAL A 15 -58.90 -139.35
REMARK 500 1 GLU A 24 -58.54 -141.01
REMARK 500 1 GLU A 31 49.74 -88.72
REMARK 500 1 ASP A 33 -170.50 68.95
REMARK 500 1 LEU A 36 -75.80 61.11
REMARK 500 1 PHE A 101 -103.77 -116.00
REMARK 500 1 LEU A 118 98.63 -41.48
REMARK 500 2 GLU A 8 -111.01 43.38
REMARK 500 2 SER A 11 13.37 172.93
REMARK 500 2 VAL A 15 -52.23 -147.63
REMARK 500 2 GLU A 24 -62.60 -136.98
REMARK 500 2 ASP A 33 -141.47 61.69
REMARK 500 2 LEU A 36 -76.89 59.89
REMARK 500 2 LEU A 74 -103.27 -112.91
REMARK 500 2 LYS A 76 -6.13 -53.33
REMARK 500 2 PHE A 101 -94.24 -115.77
REMARK 500 3 SER A 10 8.88 -172.87
REMARK 500 3 SER A 11 -161.36 -59.64
REMARK 500 3 VAL A 15 -60.19 -139.51
REMARK 500 3 GLU A 24 -59.95 -136.52
REMARK 500 3 GLU A 31 31.47 -94.96
REMARK 500 3 ASP A 33 -149.18 58.25
REMARK 500 3 LEU A 36 -78.97 60.09
REMARK 500 3 PHE A 101 -102.46 -116.68
REMARK 500 4 CYS A 3 -70.70 -58.40
REMARK 500 4 ALA A 5 19.68 44.68
REMARK 500 4 VAL A 15 -56.84 -141.93
REMARK 500 4 GLU A 24 -73.46 -131.58
REMARK 500 4 ASP A 33 -155.13 57.08
REMARK 500 4 LEU A 36 -77.32 61.35
REMARK 500 4 PHE A 101 -103.50 -120.14
REMARK 500 5 SER A 6 18.16 44.69
REMARK 500 5 GLU A 8 109.18 54.68
REMARK 500 5 SER A 10 95.51 43.88
REMARK 500 5 SER A 11 -140.93 -154.72
REMARK 500 5 VAL A 15 -55.41 -142.02
REMARK 500 5 GLU A 24 -57.37 -143.92
REMARK 500 5 PHE A 30 -131.03 -73.01
REMARK 500 5 GLU A 31 51.09 -170.47
REMARK 500 5 ASP A 33 -135.30 61.02
REMARK 500 5 LEU A 36 -76.28 60.89
REMARK 500 5 PHE A 101 -102.56 -104.05
REMARK 500 6 GLU A 8 10.08 55.29
REMARK 500 6 SER A 11 -151.87 -78.89
REMARK 500 6 VAL A 15 -49.66 -139.94
REMARK 500 6 GLU A 24 -62.39 -145.19
REMARK 500
REMARK 500 THIS ENTRY HAS 240 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6910 RELATED DB: BMRB
REMARK 900 CHEMICAL SHIFT ASSIGNMENTS
DBREF 2FE0 A 1 131 GB 55714656 AAV59017 1 131
SEQADV 2FE0 GLY A -4 GB 55714656 CLONING ARTIFACT
SEQADV 2FE0 PRO A -3 GB 55714656 CLONING ARTIFACT
SEQADV 2FE0 LEU A -2 GB 55714656 CLONING ARTIFACT
SEQADV 2FE0 GLY A -1 GB 55714656 CLONING ARTIFACT
SEQADV 2FE0 SER A 0 GB 55714656 CLONING ARTIFACT
SEQRES 1 A 136 GLY PRO LEU GLY SER MET GLY CYS GLY ALA SER SER GLU
SEQRES 2 A 136 ASN SER SER VAL THR TYR VAL ASN GLY ARG PRO THR PHE
SEQRES 3 A 136 VAL GLY GLU GLU VAL THR LYS GLY PHE GLU LYS ASP ASN
SEQRES 4 A 136 GLY LEU LEU PHE ARG ILE VAL ASN LYS LYS LYS LYS GLN
SEQRES 5 A 136 TRP ALA TYR TYR ASN ASP THR THR GLN TYR GLU MET HIS
SEQRES 6 A 136 VAL LEU VAL THR PHE ASN GLU ASP CYS ASP ILE LYS ALA
SEQRES 7 A 136 LEU GLY LYS THR LYS LEU GLU GLN GLN GLU ASN GLY GLU
SEQRES 8 A 136 TRP VAL ALA SER VAL VAL VAL TYR PRO CYS GLU THR GLU
SEQRES 9 A 136 MET PHE ILE GLU GLY ARG VAL ASN GLY PHE LYS SER LYS
SEQRES 10 A 136 MET ASP ALA LEU PRO LEU SER GLU GLU TYR ARG GLN HIS
SEQRES 11 A 136 GLN ALA GLU LYS ASP LYS
HELIX 1 1 SER A 119 ASP A 130 1 12
SHEET 1 A 5 GLU A 25 LYS A 28 0
SHEET 2 A 5 LEU A 37 ASN A 42 -1 O ARG A 39 N THR A 27
SHEET 3 A 5 GLN A 47 ASN A 52 -1 O ALA A 49 N ILE A 40
SHEET 4 A 5 THR A 98 GLY A 104 -1 O ILE A 102 N TRP A 48
SHEET 5 A 5 ILE A 71 ALA A 73 -1 N LYS A 72 O GLU A 103
SHEET 1 B 4 LYS A 78 GLN A 81 0
SHEET 2 B 4 GLU A 86 VAL A 93 -1 O VAL A 88 N GLU A 80
SHEET 3 B 4 TYR A 57 ASN A 66 -1 N PHE A 65 O TRP A 87
SHEET 4 B 4 PHE A 109 PRO A 117 -1 O LEU A 116 N GLU A 58
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000
MODEL 1
MODEL 2
MODEL 3
MODEL 4
MODEL 5
MODEL 6
MODEL 7
MODEL 8
MODEL 9
MODEL 10
MODEL 11
MODEL 12
MODEL 13
MODEL 14
MODEL 15
MODEL 16
MODEL 17
MODEL 18
MODEL 19
MODEL 20
MODEL 21
MODEL 22
MODEL 23
MODEL 24