HEADER MEMBRANE PROTEIN, VIRAL PROTEIN 04-DEC-07 2JY0 TITLE SOLUTION NMR STRUCTURE OF HCV NS2 PROTEIN, MEMBRANE SEGMENT (1-27) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE NS2-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MEMBRANE SEGMENT, RESIDUES 1-27; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS MEMBRANE SEGMENT, HCV NS2 PROTEIN, MEMBRANE PROTEIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR R.MONTSERRET,F.PENIN REVDAT 4 10-NOV-21 2JY0 1 SEQADV REVDAT 3 26-FEB-20 2JY0 1 REMARK REVDAT 2 24-FEB-09 2JY0 1 VERSN REVDAT 1 16-SEP-08 2JY0 0 JRNL AUTH V.JIRASKO,R.MONTSERRET,N.APPEL,A.JANVIER,L.EUSTACHI,C.BROHM, JRNL AUTH 2 E.STEINMANN,T.PIETSCHMANN,F.PENIN,R.BARTENSCHLAGER JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF NON-STRUCTURAL JRNL TITL 2 PROTEIN 2 FOR ITS ROLE IN HEPATITIS C VIRUS ASSEMBLY JRNL REF J.BIOL.CHEM. 2008 JRNL REFN ESSN 1083-351X JRNL PMID 18644781 JRNL DOI 10.1074/JBC.M803981200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, X-PLOR NIH REMARK 3 AUTHORS : VARIAN (VNMR), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JY0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000100431. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 308 REMARK 210 PH : NULL; NULL REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9MM NS2(1-27), REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 71.46 60.29 REMARK 500 1 HIS A 25 71.52 55.04 REMARK 500 2 ARG A 3 53.76 -161.37 REMARK 500 2 MET A 5 -57.52 -132.77 REMARK 500 2 ALA A 7 -44.58 -139.72 REMARK 500 2 SER A 8 86.46 -69.98 REMARK 500 2 ALA A 9 -63.27 -175.65 REMARK 500 2 SER A 23 104.84 63.84 REMARK 500 3 ASP A 2 -164.50 59.37 REMARK 500 3 ARG A 3 -74.23 -124.38 REMARK 500 4 ASP A 2 -59.61 -163.18 REMARK 500 4 MET A 5 -42.19 -165.54 REMARK 500 5 ARG A 3 55.03 -156.51 REMARK 500 5 MET A 5 -62.30 -166.40 REMARK 500 5 SER A 8 -84.72 -159.02 REMARK 500 6 MET A 5 -60.97 -168.87 REMARK 500 6 ALA A 9 -45.14 -150.60 REMARK 500 6 SER A 23 68.35 64.23 REMARK 500 6 HIS A 25 -51.25 -136.05 REMARK 500 6 TYR A 26 75.30 57.92 REMARK 500 7 ASP A 2 -58.58 -131.63 REMARK 500 7 ARG A 3 -79.84 64.45 REMARK 500 7 ALA A 9 -64.74 -146.88 REMARK 500 7 HIS A 25 53.22 -113.31 REMARK 500 8 ASP A 2 -167.17 -103.64 REMARK 500 8 MET A 5 -35.06 -171.71 REMARK 500 8 ALA A 7 31.28 -161.03 REMARK 500 8 SER A 23 150.45 67.36 REMARK 500 9 HIS A 25 51.51 -104.87 REMARK 500 10 ASP A 2 -45.87 -155.16 REMARK 500 10 ARG A 3 69.21 60.69 REMARK 500 10 MET A 5 -70.73 -120.80 REMARK 500 10 ALA A 7 100.21 63.92 REMARK 500 11 MET A 5 -73.85 -88.26 REMARK 500 11 ALA A 6 18.51 56.67 REMARK 500 11 LEU A 22 -78.73 -119.81 REMARK 500 12 GLU A 4 19.06 57.99 REMARK 500 12 SER A 23 93.59 55.17 REMARK 500 13 ASP A 2 -76.36 65.18 REMARK 500 13 GLU A 4 -59.01 -158.06 REMARK 500 13 ALA A 9 -52.36 74.76 REMARK 500 13 SER A 23 99.88 61.68 REMARK 500 14 MET A 5 -64.58 -139.06 REMARK 500 14 LEU A 22 50.55 -118.57 REMARK 500 15 ARG A 3 -90.16 -90.99 REMARK 500 15 ALA A 9 -73.16 65.42 REMARK 500 15 SER A 23 90.90 62.09 REMARK 500 15 HIS A 25 -65.75 -129.65 REMARK 500 16 MET A 5 -45.77 -171.78 REMARK 500 16 ALA A 6 43.85 -92.15 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 3 0.27 SIDE CHAIN REMARK 500 2 ARG A 3 0.29 SIDE CHAIN REMARK 500 3 ARG A 3 0.29 SIDE CHAIN REMARK 500 4 ARG A 3 0.32 SIDE CHAIN REMARK 500 5 ARG A 3 0.31 SIDE CHAIN REMARK 500 6 ARG A 3 0.28 SIDE CHAIN REMARK 500 7 ARG A 3 0.32 SIDE CHAIN REMARK 500 8 ARG A 3 0.31 SIDE CHAIN REMARK 500 9 ARG A 3 0.32 SIDE CHAIN REMARK 500 10 ARG A 3 0.32 SIDE CHAIN REMARK 500 11 ARG A 3 0.31 SIDE CHAIN REMARK 500 12 ARG A 3 0.32 SIDE CHAIN REMARK 500 13 ARG A 3 0.29 SIDE CHAIN REMARK 500 14 ARG A 3 0.31 SIDE CHAIN REMARK 500 15 ARG A 3 0.32 SIDE CHAIN REMARK 500 16 ARG A 3 0.32 SIDE CHAIN REMARK 500 17 ARG A 3 0.32 SIDE CHAIN REMARK 500 18 ARG A 3 0.30 SIDE CHAIN REMARK 500 19 ARG A 3 0.32 SIDE CHAIN REMARK 500 20 ARG A 3 0.31 SIDE CHAIN REMARK 500 21 ARG A 3 0.31 SIDE CHAIN REMARK 500 22 ARG A 3 0.32 SIDE CHAIN REMARK 500 23 ARG A 3 0.32 SIDE CHAIN REMARK 500 24 ARG A 3 0.30 SIDE CHAIN REMARK 500 25 ARG A 3 0.31 SIDE CHAIN REMARK 500 26 ARG A 3 0.32 SIDE CHAIN REMARK 500 27 ARG A 3 0.28 SIDE CHAIN REMARK 500 28 ARG A 3 0.32 SIDE CHAIN REMARK 500 29 ARG A 3 0.30 SIDE CHAIN REMARK 500 30 ARG A 3 0.30 SIDE CHAIN REMARK 500 31 ARG A 3 0.31 SIDE CHAIN REMARK 500 32 ARG A 3 0.32 SIDE CHAIN REMARK 500 33 ARG A 3 0.32 SIDE CHAIN REMARK 500 34 ARG A 3 0.32 SIDE CHAIN REMARK 500 35 ARG A 3 0.31 SIDE CHAIN REMARK 500 36 ARG A 3 0.31 SIDE CHAIN REMARK 500 37 ARG A 3 0.29 SIDE CHAIN REMARK 500 38 ARG A 3 0.32 SIDE CHAIN REMARK 500 39 ARG A 3 0.31 SIDE CHAIN REMARK 500 40 ARG A 3 0.31 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15579 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUNECE COME FROM A NATURAL VARIANT OF HCV STRAIN CON1. DBREF 2JY0 A 1 27 UNP Q9WMX2 POLG_HCVCO 810 836 SEQADV 2JY0 ALA A 9 UNP Q9WMX2 CYS 818 ENGINEERED MUTATION SEQADV 2JY0 VAL A 18 UNP Q9WMX2 ILE 827 SEE REMARK 999 SEQRES 1 A 27 MET ASP ARG GLU MET ALA ALA SER ALA GLY GLY ALA VAL SEQRES 2 A 27 PHE VAL GLY LEU VAL LEU LEU THR LEU SER PRO HIS TYR SEQRES 3 A 27 LYS HELIX 1 1 ARG A 3 SER A 8 1 6 HELIX 2 2 GLY A 11 SER A 23 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20 MODEL 21 MODEL 22 MODEL 23 MODEL 24 MODEL 25 MODEL 26 MODEL 27 MODEL 28 MODEL 29 MODEL 30 MODEL 31 MODEL 32 MODEL 33 MODEL 34 MODEL 35 MODEL 36 MODEL 37 MODEL 38 MODEL 39 MODEL 40