HEADER SUGAR BINDING PROTEIN 31-MAY-09 2KJL TITLE NMR STRUCTURES OF A DESIGNED CYANOVIRIN-N HOMOLOG LECTIN; LKAMG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYANOVIRIN-N HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TUBER BORCHII,NEUROSPORA CRASSA,TUBER BORCHII; SOURCE 3 ORGANISM_TAXID: 42251,5141,42251; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CYANOVIRIN-N, CVNH, LECTIN, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR L.M.I.KOHARUDIN,A.M.GRONENBORN REVDAT 3 26-FEB-20 2KJL 1 REMARK SEQADV REVDAT 2 30-JUN-09 2KJL 1 JRNL REVDAT 1 23-JUN-09 2KJL 0 JRNL AUTH L.M.KOHARUDIN,A.R.VISCOMI,J.G.JEE,S.OTTONELLO,A.M.GRONENBORN JRNL TITL THE EVOLUTIONARILY CONSERVED FAMILY OF CYANOVIRIN-N JRNL TITL 2 HOMOLOGS: STRUCTURES AND CARBOHYDRATE SPECIFICITY. JRNL REF STRUCTURE V. 16 570 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18400178 JRNL DOI 10.1016/J.STR.2008.01.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101200. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] LKAMG, 20MM REMARK 210 SODIUM PHOSPHATE BUFFER, 0.02% REMARK 210 SODIUM AZIDE, 90% H2O, 10% D2O; REMARK 210 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 LKAMG, 20MM SODIUM PHOSPHATE REMARK 210 BUFFER, 0.02% SODIUM AZIDE, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 15N-1H HSQC; 3D CBCANH; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 H(C)CH-NH TOCSY; (H)CCH-NH TOCSY; REMARK 210 3D HBHA(CO)NH; 3D SIMULTANEOUS REMARK 210 15N/13C NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE, TALOS REMARK 210 METHOD USED : CNS SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 800 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : 30 STRUCTURES WITH LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 40 14.04 -142.08 REMARK 500 1 GLN A 53 141.54 72.85 REMARK 500 1 ASN A 54 37.87 70.48 REMARK 500 1 GLU A 86 -168.18 -112.08 REMARK 500 2 ILE A 40 13.25 -140.54 REMARK 500 2 GLN A 53 138.48 76.02 REMARK 500 2 GLU A 86 -165.45 -125.98 REMARK 500 3 SER A 6 46.56 -140.29 REMARK 500 3 ILE A 40 11.79 -144.53 REMARK 500 3 ASP A 45 62.07 39.30 REMARK 500 3 HIS A 47 118.13 -163.24 REMARK 500 3 GLN A 53 144.32 74.76 REMARK 500 3 GLU A 86 -163.44 -123.33 REMARK 500 4 ILE A 40 10.34 -141.11 REMARK 500 4 GLN A 53 145.46 72.07 REMARK 500 4 GLU A 86 -163.99 -112.60 REMARK 500 5 SER A 6 34.13 -141.47 REMARK 500 5 ILE A 40 12.60 -143.99 REMARK 500 5 GLN A 53 145.51 70.15 REMARK 500 5 ASN A 54 31.78 72.35 REMARK 500 5 GLU A 86 -165.86 -122.03 REMARK 500 6 SER A 6 39.32 -148.01 REMARK 500 6 ILE A 40 10.60 -141.94 REMARK 500 6 ASP A 45 59.41 39.16 REMARK 500 6 GLN A 53 144.96 72.61 REMARK 500 6 GLU A 86 -163.72 -126.97 REMARK 500 7 SER A 2 -178.88 177.48 REMARK 500 7 ILE A 40 10.80 -143.16 REMARK 500 7 GLN A 53 144.56 72.98 REMARK 500 7 GLU A 86 -169.10 -122.64 REMARK 500 8 ILE A 40 10.36 -142.78 REMARK 500 8 GLN A 53 143.31 70.69 REMARK 500 8 ASN A 54 31.23 76.89 REMARK 500 8 GLU A 86 -162.63 -123.37 REMARK 500 9 SER A 2 -165.74 -104.99 REMARK 500 9 ILE A 40 12.90 -142.95 REMARK 500 9 GLN A 53 143.89 73.07 REMARK 500 9 GLU A 86 -166.12 -104.25 REMARK 500 10 ILE A 40 10.80 -141.36 REMARK 500 10 GLN A 53 143.09 73.26 REMARK 500 11 ILE A 40 10.05 -142.62 REMARK 500 11 GLN A 53 144.97 70.68 REMARK 500 11 ASN A 54 33.65 71.08 REMARK 500 11 GLU A 86 -167.36 -105.98 REMARK 500 12 ILE A 40 10.53 -141.28 REMARK 500 12 GLN A 53 139.00 73.55 REMARK 500 12 ASN A 54 36.69 70.35 REMARK 500 12 GLU A 86 -162.92 -124.32 REMARK 500 13 SER A 2 -177.94 -174.16 REMARK 500 13 ILE A 40 10.47 -141.24 REMARK 500 REMARK 500 THIS ENTRY HAS 116 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16339 RELATED DB: BMRB DBREF 2KJL A 1 39 UNP Q5MK11 Q5MK11_TUBBO 1 39 DBREF 2KJL A 40 93 UNP Q7S6U4 Q7S6U4_NEUCR 42 95 DBREF 2KJL A 94 107 UNP Q5MK11 Q5MK11_TUBBO 90 103 SEQADV 2KJL GLY A -2 UNP Q5MK11 EXPRESSION TAG SEQADV 2KJL SER A -1 UNP Q5MK11 EXPRESSION TAG SEQADV 2KJL HIS A 0 UNP Q5MK11 EXPRESSION TAG SEQRES 1 A 110 GLY SER HIS MET SER TYR ALA ASP SER SER ARG ASN ALA SEQRES 2 A 110 VAL LEU THR ASN GLY GLY ARG THR LEU ARG ALA GLU CYS SEQRES 3 A 110 ARG ASN ALA ASP GLY ASN TRP VAL THR SER GLU LEU ASP SEQRES 4 A 110 LEU ASP THR ILE ILE GLY ASN ASN ASP GLY HIS PHE GLN SEQRES 5 A 110 TRP GLY GLY GLN ASN PHE THR GLU THR ALA GLU ASP ILE SEQRES 6 A 110 ARG PHE HIS PRO LYS GLU GLY ALA ALA GLU GLN PRO ILE SEQRES 7 A 110 LEU ARG ALA ARG LEU ARG ASP CYS ASN GLY GLU PHE HIS SEQRES 8 A 110 ASP ARG ASP VAL ASN LEU ASN ARG ILE GLN ASN VAL ASN SEQRES 9 A 110 GLY ARG LEU VAL PHE GLN HELIX 1 1 SER A 2 ASP A 5 5 4 HELIX 2 2 LEU A 37 ILE A 40 1 4 HELIX 3 3 GLU A 68 GLU A 72 5 5 SHEET 1 A 3 SER A 7 THR A 13 0 SHEET 2 A 3 THR A 18 ARG A 24 -1 O GLU A 22 N ARG A 8 SHEET 3 A 3 TRP A 30 ASP A 36 -1 O LEU A 35 N LEU A 19 SHEET 1 B 2 ILE A 41 ASN A 43 0 SHEET 2 B 2 PHE A 48 TRP A 50 -1 O GLN A 49 N GLY A 42 SHEET 1 C 3 ALA A 59 HIS A 65 0 SHEET 2 C 3 ILE A 75 LEU A 80 -1 O ARG A 79 N GLU A 60 SHEET 3 C 3 HIS A 88 ASN A 93 -1 O ARG A 90 N ALA A 78 SHEET 1 D 2 ILE A 97 ASN A 99 0 SHEET 2 D 2 LEU A 104 PHE A 106 -1 O VAL A 105 N GLN A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20 MODEL 21 MODEL 22 MODEL 23 MODEL 24 MODEL 25 MODEL 26 MODEL 27 MODEL 28 MODEL 29 MODEL 30