HEADER BIOSYNTHETIC PROTEIN 16-JUN-11 2LEK TITLE SOLUTION NMR STRUCTURE OF A THIAMINE BIOSYNTHESIS (THIS) PROTEIN TITLE 2 RPA3574 FROM RHODOPSEUDOMONAS PALUSTRIS REFINED WITH NH RDCS. TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RPR325 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIAMIN BIOSYNTHESIS THIS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: THIS, RPA3574; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS BETA-GRASP FOLD, STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,H.LEE,H.WANG,C.CICCOSANTI,M.JIANG,R.NAIR,B.ROST, AUTHOR 2 T.B.ACTON,R.XIAO,G.SWAPNA,J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2LEK 1 REMARK SEQADV REVDAT 3 22-FEB-12 2LEK 1 KEYWDS REVDAT 2 24-AUG-11 2LEK 1 SPRSDE VERSN REVDAT 1 29-JUN-11 2LEK 0 SPRSDE 24-AUG-11 2LEK 2KL0 JRNL AUTH T.A.RAMELOT,J.R.CORT,H.WANG,C.CICCOSANTI,M.JIANG,R.NAIR, JRNL AUTH 2 B.ROST,T.B.ACTON,R.XIAO,G.SWAPNA,J.K.EVERETT,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF A THIAMINE BIOSYNTHESIS (THIS) JRNL TITL 2 PROTEIN RPA3574 FROM RHODOPSEUDOMONAS PALUSTRIS. NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS CONSORTIUM TARGET RPR325 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.3, PSVS 1.4 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), BHATTACHARYA AND MONTELIONE (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS WATER REFINEMENT REMARK 4 REMARK 4 2LEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000102297. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 10 MM DTT, 90% H2O/10% D2O; 0.8 REMARK 210 MM U-100% 15N AND 5% 13C REMARK 210 BIOSYNTHETICALLY DIRECTED REMARK 210 PROTEIN, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 10 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC-CT; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY_ REMARK 210 ALIPH; 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D 1H-13C NOESY_AROM; REMARK 210 3D HBHA(CO)NH; 3D C(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 2D 1H- REMARK 210 15N HSQC_HIS; 3D HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.4, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.25, SPARKY 3.113, AUTOASSIGN REMARK 210 2.30, PDBSTAT 5.4, PINE SERVER REMARK 210 1.0, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 26 38.17 -92.48 REMARK 500 1 HIS A 30 86.10 -154.78 REMARK 500 1 TYR A 37 -5.86 72.89 REMARK 500 1 HIS A 70 118.13 -160.74 REMARK 500 3 CYS A 26 34.56 -92.75 REMARK 500 3 HIS A 71 -62.05 -122.18 REMARK 500 4 CYS A 26 33.52 -95.50 REMARK 500 4 TYR A 37 -9.28 73.91 REMARK 500 4 ARG A 62 72.90 59.50 REMARK 500 4 HIS A 72 84.83 59.03 REMARK 500 5 CYS A 26 40.95 -88.98 REMARK 500 5 TYR A 37 -16.80 74.89 REMARK 500 5 THR A 60 67.84 -119.00 REMARK 500 5 HIS A 70 106.95 47.87 REMARK 500 5 HIS A 72 93.53 54.34 REMARK 500 6 GLU A 67 93.33 -68.73 REMARK 500 6 HIS A 68 -77.19 74.74 REMARK 500 7 GLU A 67 32.10 -88.01 REMARK 500 8 ALA A 15 -43.17 75.45 REMARK 500 8 ARG A 62 115.99 70.66 REMARK 500 8 HIS A 69 102.52 -56.62 REMARK 500 9 TYR A 37 -2.03 74.02 REMARK 500 9 ARG A 62 99.96 -65.91 REMARK 500 9 GLN A 63 77.83 59.80 REMARK 500 9 LEU A 66 99.69 -68.24 REMARK 500 9 HIS A 71 131.98 -174.38 REMARK 500 10 HIS A 30 72.56 56.18 REMARK 500 10 GLN A 63 -62.33 81.25 REMARK 500 10 HIS A 72 171.51 69.59 REMARK 500 11 TYR A 37 -2.10 71.18 REMARK 500 11 ARG A 62 78.11 70.46 REMARK 500 11 HIS A 69 91.01 -69.29 REMARK 500 12 ALA A 15 -50.33 77.02 REMARK 500 12 CYS A 26 37.71 -96.92 REMARK 500 12 GLN A 63 -56.61 82.86 REMARK 500 12 HIS A 69 117.40 72.42 REMARK 500 12 HIS A 71 89.32 -67.57 REMARK 500 13 ARG A 62 -78.99 -111.97 REMARK 500 13 HIS A 69 -83.19 57.78 REMARK 500 13 HIS A 70 -153.71 63.06 REMARK 500 14 SER A 14 100.07 -57.46 REMARK 500 14 CYS A 26 40.68 -96.36 REMARK 500 14 ASP A 28 109.02 -57.52 REMARK 500 14 LEU A 66 80.33 -156.36 REMARK 500 14 HIS A 69 45.07 -84.07 REMARK 500 15 ARG A 62 77.17 60.08 REMARK 500 15 GLN A 63 -49.35 -145.11 REMARK 500 15 GLU A 67 92.81 -54.62 REMARK 500 15 HIS A 69 104.57 -164.35 REMARK 500 16 CYS A 26 36.92 -92.78 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16377 RELATED DB: BMRB REMARK 900 RELATED ID: RPR325 RELATED DB: TARGETDB DBREF 2LEK A 1 65 UNP Q6N3W8 Q6N3W8_RHOPA 1 65 SEQADV 2LEK ASP A 28 UNP Q6N3W8 GLY 28 CONFLICT SEQADV 2LEK TYR A 31 UNP Q6N3W8 PHE 31 CONFLICT SEQADV 2LEK LEU A 66 UNP Q6N3W8 EXPRESSION TAG SEQADV 2LEK GLU A 67 UNP Q6N3W8 EXPRESSION TAG SEQADV 2LEK HIS A 68 UNP Q6N3W8 EXPRESSION TAG SEQADV 2LEK HIS A 69 UNP Q6N3W8 EXPRESSION TAG SEQADV 2LEK HIS A 70 UNP Q6N3W8 EXPRESSION TAG SEQADV 2LEK HIS A 71 UNP Q6N3W8 EXPRESSION TAG SEQADV 2LEK HIS A 72 UNP Q6N3W8 EXPRESSION TAG SEQADV 2LEK HIS A 73 UNP Q6N3W8 EXPRESSION TAG SEQRES 1 A 73 MET LEU VAL THR ILE ASN GLY GLU GLN ARG GLU VAL GLN SEQRES 2 A 73 SER ALA SER VAL ALA ALA LEU MET THR GLU LEU ASP CYS SEQRES 3 A 73 THR ASP GLY HIS TYR ALA VAL ALA LEU ASN TYR ASP VAL SEQRES 4 A 73 VAL PRO ARG GLY LYS TRP ASP GLU THR PRO VAL THR ALA SEQRES 5 A 73 GLY ASP GLU ILE GLU ILE LEU THR PRO ARG GLN GLY GLY SEQRES 6 A 73 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 16 LEU A 24 1 9 HELIX 2 2 PRO A 41 TRP A 45 5 5 HELIX 3 3 LEU A 66 HIS A 70 5 5 SHEET 1 A 5 GLU A 8 GLU A 11 0 SHEET 2 A 5 LEU A 2 ILE A 5 -1 N ILE A 5 O GLU A 8 SHEET 3 A 5 GLU A 55 LEU A 59 1 O ILE A 56 N THR A 4 SHEET 4 A 5 ALA A 32 LEU A 35 -1 N ALA A 34 O GLU A 57 SHEET 5 A 5 ASP A 38 VAL A 40 -1 O ASP A 38 N LEU A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20