HEADER    TRANSCRIPTION                           02-SEP-13   2MD8              
TITLE     NMR STRUCTURE OF SP140 PHD FINGER CIS CONFORMER                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NUCLEAR BODY PROTEIN SP140;                                
COMPND   3 CHAIN: C;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 687-738;                                      
COMPND   5 SYNONYM: LYMPHOID-RESTRICTED HOMOLOG OF SP100, LYSP100, NUCLEAR      
COMPND   6 AUTOANTIGEN SP-140, SPECKLED 140 KDA;                                
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PETM11                                    
KEYWDS    PHD FINGER, TRANSCRIPTION                                             
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    C.ZUCCHELLI,G.QUILICI,G.MUSCO                                         
REVDAT   4   27-NOV-24 2MD8    1       REMARK                                   
REVDAT   3   14-JUN-23 2MD8    1       REMARK SEQADV LINK                       
REVDAT   2   22-JAN-14 2MD8    1       JRNL                                     
REVDAT   1   13-NOV-13 2MD8    0                                                
JRNL        AUTH   C.ZUCCHELLI,S.TAMBURRI,G.QUILICI,E.PALAGANO,A.BERARDI,       
JRNL        AUTH 2 M.SAARE,P.PETERSON,A.BACHI,G.MUSCO                           
JRNL        TITL   STRUCTURE OF HUMAN SP140 PHD FINGER: AN ATYPICAL FOLD        
JRNL        TITL 2 INTERACTING WITH PIN1.                                       
JRNL        REF    FEBS J.                       V. 281   216 2014              
JRNL        REFN                   ISSN 1742-464X                               
JRNL        PMID   24267382                                                     
JRNL        DOI    10.1111/FEBS.12588                                           
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : TOPSPIN, ARIA, PROCHECKNMR                           
REMARK   3   AUTHORS     : BRUKER BIOSPIN (TOPSPIN), LINGE, O'DONOGHUE AND      
REMARK   3                 NILGES (ARIA), LASKOWSKI AND MACARTHUR               
REMARK   3                 (PROCHECKNMR)                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2MD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-13.                  
REMARK 100 THE DEPOSITION ID IS D_1000103498.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.3                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1 MM [U-100% 13C; U-100% 15N]      
REMARK 210                                   SP140 PHD FINGER CIS CONFORMER,    
REMARK 210                                   50 UM ZINC ION, 0.3 MM DSS, 5 MM   
REMARK 210                                   DTT, 20 MM SODIUM PHOSPHATE PH     
REMARK 210                                   6.3, 150 MM NACL, 90% H2O/10%      
REMARK 210                                   D2O; 1 MM [U-100% 13C; U-100%      
REMARK 210                                   15N] SP140 PHD FINGER CIS          
REMARK 210                                   CONFORMER, 50 UM ZINC ION, 0.3     
REMARK 210                                   MM DSS, 5 MM DTT, 20 MM SODIUM     
REMARK 210                                   PHOSPHATE PH 6.3, 150 MM NACL,     
REMARK 210                                   100% D2O; 0.8 MM [U-100% 15N]      
REMARK 210                                   SP140 PHD FINGER CIS CONFORMER,    
REMARK 210                                   50 UM ZINC ION, 0.3 MM DSS, 5 MM   
REMARK 210                                   DTT, 20 MM SODIUM PHOSPHATE PH     
REMARK 210                                   6.3, 150 MM NACL, 90% H2O/10%      
REMARK 210                                   D2O; 1 MM SP140 PHD FINGER CIS     
REMARK 210                                   CONFORMER, 50 UM ZINC ION, 0.3     
REMARK 210                                   MM DSS, 5 MM DTT, 20 MM SODIUM     
REMARK 210                                   PHOSPHATE PH 6.3, 150 MM NACL,     
REMARK 210                                   100% D2O; 1 MM SP140 PHD FINGER    
REMARK 210                                   CIS CONFORMER, 50 UM ZINC ION,     
REMARK 210                                   0.3 MM DSS, 5 MM DTT, 20 MM        
REMARK 210                                   SODIUM PHOSPHATE PH 6.3, 150 MM    
REMARK 210                                   NACL, 90% H2O/10% D2O              
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC;    
REMARK 210                                   2D 1H-1H TOCSY; 2D 1H-1H NOESY;    
REMARK 210                                   3D CBCA(CO)NH; 3D C(CO)NH; 3D      
REMARK 210                                   HNCO; 3D HNCA; 3D HNCACB; 3D       
REMARK 210                                   H(CCO)NH; 3D HCCH-TOCSY; 3D HNHA;  
REMARK 210                                   3D 1H-15N NOESY; 3D 1H-13C         
REMARK 210                                   NOESY ALIPHATIC; 3D 1H-13C NOESY   
REMARK 210                                   AROMATIC                           
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 900 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : TOPSPIN, NMRPIPE, ARIA             
REMARK 210   METHOD USED                   : SIMULATED ANNEALING, DISTANCE      
REMARK 210                                   GEOMETRY                           
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 MET C   3      -56.52     71.86                                   
REMARK 500  1 PHE C  21       59.12   -118.83                                   
REMARK 500  1 PRO C  38       31.57    -86.14                                   
REMARK 500  1 GLU C  42     -113.58     58.74                                   
REMARK 500  1 THR C  44       84.11   -153.23                                   
REMARK 500  1 LYS C  54     -159.15     60.28                                   
REMARK 500  2 PHE C  21       53.45   -106.20                                   
REMARK 500  2 ALA C  41      -63.62   -153.18                                   
REMARK 500  2 THR C  44      153.38     62.68                                   
REMARK 500  2 ASN C  47      103.35   -168.29                                   
REMARK 500  3 PHE C  21       52.99   -109.08                                   
REMARK 500  3 HIS C  35       45.07    -89.77                                   
REMARK 500  3 ALA C  41       12.95   -148.48                                   
REMARK 500  3 ARG C  43       31.06    -95.31                                   
REMARK 500  4 PHE C  21       62.24   -114.70                                   
REMARK 500  4 GLU C  42      -73.62    -99.90                                   
REMARK 500  4 THR C  44      141.46    176.06                                   
REMARK 500  5 LEU C   8       77.12   -108.99                                   
REMARK 500  5 PRO C  38       91.18    -64.37                                   
REMARK 500  5 ARG C  43       78.30     55.07                                   
REMARK 500  5 ASN C  47      128.48   -171.17                                   
REMARK 500  6 MET C   3      -74.79     67.62                                   
REMARK 500  6 MET C   5      106.96     64.71                                   
REMARK 500  6 GLU C  40      -49.14     71.52                                   
REMARK 500  7 CYS C  11       96.38    -69.06                                   
REMARK 500  7 PHE C  21       53.84   -106.40                                   
REMARK 500  7 HIS C  35       30.32    -90.64                                   
REMARK 500  7 PRO C  38       71.38    -66.12                                   
REMARK 500  7 GLU C  40      -77.67    -80.54                                   
REMARK 500  7 TRP C  46       96.60    -69.01                                   
REMARK 500  8 MET C   3      -75.32   -136.04                                   
REMARK 500  8 PHE C  21       49.39   -102.71                                   
REMARK 500  9 ALA C   2      -71.45     69.40                                   
REMARK 500  9 GLU C  10      -12.04   -162.14                                   
REMARK 500  9 TRP C  46      -72.45   -171.66                                   
REMARK 500  9 ASN C  47      118.83     68.80                                   
REMARK 500  9 LYS C  54      -57.57   -160.27                                   
REMARK 500 10 PHE C  21       60.73   -104.76                                   
REMARK 500 10 THR C  44      111.08     52.57                                   
REMARK 500 11 LEU C   8       32.13    -85.21                                   
REMARK 500 11 PHE C  21       53.23   -103.95                                   
REMARK 500 11 ALA C  41      -26.74   -173.67                                   
REMARK 500 11 GLU C  42       46.35   -155.58                                   
REMARK 500 11 ARG C  43       40.63    -81.70                                   
REMARK 500 11 LYS C  54       71.31   -114.50                                   
REMARK 500 12 MET C   5      -48.22   -131.06                                   
REMARK 500 12 ARG C   6       74.61   -103.47                                   
REMARK 500 12 PHE C  21       60.72   -109.09                                   
REMARK 500 12 THR C  44      162.29     61.14                                   
REMARK 500 13 MET C   5       51.48    -95.89                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      87 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN C 102  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS C  11   SG                                                     
REMARK 620 2 CYS C  14   SG  109.1                                              
REMARK 620 3 HIS C  31   NE2 108.3 109.4                                        
REMARK 620 4 HIS C  35   NE2 110.0 109.5 110.6                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN C 101  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS C  23   SG                                                     
REMARK 620 2 CYS C  26   SG  111.3                                              
REMARK 620 3 CYS C  48   SG  106.4 109.7                                        
REMARK 620 4 CYS C  51   SG  110.5 110.4 108.4                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 101                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 102                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2MD7   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 19473   RELATED DB: BMRB                                 
DBREF  2MD8 C    5    56  UNP    Q13342   SP140_HUMAN    687    738             
SEQADV 2MD8 GLY C    1  UNP  Q13342              EXPRESSION TAG                 
SEQADV 2MD8 ALA C    2  UNP  Q13342              EXPRESSION TAG                 
SEQADV 2MD8 MET C    3  UNP  Q13342              EXPRESSION TAG                 
SEQADV 2MD8 GLY C    4  UNP  Q13342              EXPRESSION TAG                 
SEQRES   1 C   56  GLY ALA MET GLY MET ARG ASN LEU ASP GLU CYS GLU VAL          
SEQRES   2 C   56  CYS ARG ASP GLY GLY GLU LEU PHE CYS CYS ASP THR CYS          
SEQRES   3 C   56  SER ARG VAL PHE HIS GLU ASP CYS HIS ILE PRO PRO VAL          
SEQRES   4 C   56  GLU ALA GLU ARG THR PRO TRP ASN CYS ILE PHE CYS ARG          
SEQRES   5 C   56  MET LYS GLU SER                                              
HET     ZN  C 101       1                                                       
HET     ZN  C 102       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    2(ZN 2+)                                                     
HELIX    1   1 CYS C   11  ASP C   16  1                                   6    
HELIX    2   2 CYS C   23  HIS C   31  1                                   9    
HELIX    3   3 GLU C   32  ILE C   36  5                                   5    
HELIX    4   4 CYS C   48  MET C   53  1                                   6    
SSBOND   1 CYS C   22    CYS C   34                          1555   1555  2.03  
LINK         SG  CYS C  11                ZN    ZN C 102     1555   1555  2.29  
LINK         SG  CYS C  14                ZN    ZN C 102     1555   1555  2.29  
LINK         SG  CYS C  23                ZN    ZN C 101     1555   1555  2.31  
LINK         SG  CYS C  26                ZN    ZN C 101     1555   1555  2.31  
LINK         NE2 HIS C  31                ZN    ZN C 102     1555   1555  2.00  
LINK         NE2 HIS C  35                ZN    ZN C 102     1555   1555  1.99  
LINK         SG  CYS C  48                ZN    ZN C 101     1555   1555  2.29  
LINK         SG  CYS C  51                ZN    ZN C 101     1555   1555  2.30  
CISPEP   1 ILE C   36    PRO C   37          1         0.48                     
CISPEP   2 THR C   44    PRO C   45          1        -5.77                     
CISPEP   3 ILE C   36    PRO C   37          2        -3.90                     
CISPEP   4 THR C   44    PRO C   45          2        -1.34                     
CISPEP   5 ILE C   36    PRO C   37          3         0.83                     
CISPEP   6 THR C   44    PRO C   45          3        -1.01                     
CISPEP   7 ILE C   36    PRO C   37          4        -1.58                     
CISPEP   8 THR C   44    PRO C   45          4        -1.54                     
CISPEP   9 ILE C   36    PRO C   37          5        -0.36                     
CISPEP  10 THR C   44    PRO C   45          5        -1.93                     
CISPEP  11 ILE C   36    PRO C   37          6        -2.39                     
CISPEP  12 THR C   44    PRO C   45          6        -1.45                     
CISPEP  13 ILE C   36    PRO C   37          7         2.38                     
CISPEP  14 THR C   44    PRO C   45          7        -1.72                     
CISPEP  15 ILE C   36    PRO C   37          8        -3.48                     
CISPEP  16 THR C   44    PRO C   45          8        -3.75                     
CISPEP  17 ILE C   36    PRO C   37          9        -2.23                     
CISPEP  18 THR C   44    PRO C   45          9        -2.24                     
CISPEP  19 ILE C   36    PRO C   37         10        -1.71                     
CISPEP  20 THR C   44    PRO C   45         10        -5.99                     
CISPEP  21 ILE C   36    PRO C   37         11        -2.19                     
CISPEP  22 THR C   44    PRO C   45         11        -3.20                     
CISPEP  23 ILE C   36    PRO C   37         12         0.32                     
CISPEP  24 THR C   44    PRO C   45         12        -0.69                     
CISPEP  25 ILE C   36    PRO C   37         13        -8.30                     
CISPEP  26 THR C   44    PRO C   45         13        -1.47                     
CISPEP  27 ILE C   36    PRO C   37         14         1.14                     
CISPEP  28 THR C   44    PRO C   45         14        -0.05                     
CISPEP  29 ILE C   36    PRO C   37         15         0.90                     
CISPEP  30 THR C   44    PRO C   45         15        -2.37                     
CISPEP  31 ILE C   36    PRO C   37         16         0.81                     
CISPEP  32 THR C   44    PRO C   45         16        -4.42                     
CISPEP  33 ILE C   36    PRO C   37         17        -0.98                     
CISPEP  34 THR C   44    PRO C   45         17        -2.64                     
CISPEP  35 ILE C   36    PRO C   37         18        -4.34                     
CISPEP  36 THR C   44    PRO C   45         18        -8.88                     
CISPEP  37 ILE C   36    PRO C   37         19       -11.25                     
CISPEP  38 THR C   44    PRO C   45         19        -3.40                     
CISPEP  39 ILE C   36    PRO C   37         20        -0.69                     
CISPEP  40 THR C   44    PRO C   45         20         0.77                     
SITE     1 AC1  4 CYS C  23  CYS C  26  CYS C  48  CYS C  51                    
SITE     1 AC2  4 CYS C  11  CYS C  14  HIS C  31  HIS C  35                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1                                                                  
MODEL        2                                                                  
MODEL        3                                                                  
MODEL        4                                                                  
MODEL        5                                                                  
MODEL        6                                                                  
MODEL        7                                                                  
MODEL        8                                                                  
MODEL        9                                                                  
MODEL       10                                                                  
MODEL       11                                                                  
MODEL       12                                                                  
MODEL       13                                                                  
MODEL       14                                                                  
MODEL       15                                                                  
MODEL       16                                                                  
MODEL       17                                                                  
MODEL       18                                                                  
MODEL       19                                                                  
MODEL       20