HEADER DE NOVO PROTEIN 21-FEB-14 2MLB TITLE NMR SOLUTION STRUCTURE OF A COMPUTATIONAL DESIGNED PROTEIN BASED ON TITLE 2 TEMPLATE OF HUMAN ERYTHROCYTIC UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDESIGNED UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS PROTEIN DESIGN, STATISTICAL ENERGY FUNCTION, UBIQUITIN, DE NOVO KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.XIONG,M.WANG,J.ZHANG,Q.CHEN,H.LIU REVDAT 3 14-JUN-23 2MLB 1 REMARK REVDAT 2 21-SEP-16 2MLB 1 JRNL REVDAT 1 29-OCT-14 2MLB 0 JRNL AUTH P.XIONG,M.WANG,X.ZHOU,T.ZHANG,J.ZHANG,Q.CHEN,H.LIU JRNL TITL PROTEIN DESIGN WITH A COMPREHENSIVE STATISTICAL ENERGY JRNL TITL 2 FUNCTION AND BOOSTED BY EXPERIMENTAL SELECTION FOR JRNL TITL 3 FOLDABILITY JRNL REF NAT COMMUN V. 5 5330 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25345468 JRNL DOI 10.1038/NCOMMS6330 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3, CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103752. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-100% 15N] REDESIGNED REMARK 210 UBIQUITIN-1, 25 MM PHOSPHATE REMARK 210 BUFFER-2, 100 MM SODIUM CHLORIDE- REMARK 210 3, 2 MM EDTA-4, 10 % [U-100% 2H] REMARK 210 D2O-5, 90% H2O/10% D2O; 0.5-1 MM REMARK 210 [U-100% 13C] REDESIGNED REMARK 210 UBIQUITIN-6, 25 MM PHOSPHATE REMARK 210 BUFFER-7, 100 MM SODIUM CHLORIDE- REMARK 210 8, 2 MM EDTA-9, 100 % [U-100% 2H] REMARK 210 D2O-10, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 LEU A 78 116.70 71.43 REMARK 500 3 ASP A 2 -9.09 -140.67 REMARK 500 8 LEU A 78 -54.54 76.61 REMARK 500 11 ASP A 2 -26.53 -141.23 REMARK 500 12 LYS A 75 123.98 72.09 REMARK 500 13 LYS A 74 -42.79 -133.37 REMARK 500 20 ASP A 2 -7.85 -142.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19811 RELATED DB: BMRB REMARK 900 RELATED ID: 2MN4 RELATED DB: PDB DBREF 2MLB A 1 79 PDB 2MLB 2MLB 1 79 SEQRES 1 A 79 MET ASP THR ILE ASN ILE THR LEU PRO ASP GLY LYS THR SEQRES 2 A 79 LEU THR LEU THR VAL THR PRO GLU PHE THR VAL LYS GLU SEQRES 3 A 79 LEU ALA GLU GLU ILE ALA ARG ARG LEU GLY LEU SER PRO SEQRES 4 A 79 GLU ASP ILE LYS LEU THR HIS ASN GLY LYS THR LEU ASP SEQRES 5 A 79 PRO SER LEU THR LEU ALA GLU TYR GLY ILE THR PRO GLY SEQRES 6 A 79 SER THR ILE THR LEU GLU ILE LYS LYS LYS GLY GLY LEU SEQRES 7 A 79 GLU HELIX 1 1 THR A 23 GLY A 36 1 14 HELIX 2 2 THR A 56 GLY A 61 1 6 SHEET 1 A 5 THR A 13 THR A 17 0 SHEET 2 A 5 THR A 3 THR A 7 -1 N ILE A 4 O LEU A 16 SHEET 3 A 5 THR A 67 ILE A 72 1 O ILE A 68 N THR A 7 SHEET 4 A 5 ILE A 42 HIS A 46 -1 N LYS A 43 O GLU A 71 SHEET 5 A 5 LYS A 49 THR A 50 -1 O LYS A 49 N HIS A 46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20