HEADER BIOSYNTHETIC PROTEIN 15-OCT-14 2MVV TITLE SOLUTION STRUCTURE OF THE 5-PHENYL-3-OXO-PENTYL ACTINORHODIN ACYL TITLE 2 CARRIER PROTEIN FROM STREPTOMYCES COELICOLOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTINORHODIN POLYKETIDE SYNTHASE ACYL CARRIER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACP, ACTI ORF3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: ATCC BAA-471 / A3(2) / M145; SOURCE 5 GENE: SCO5089, SCBAC28G1.15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 11C KEYWDS ACTINORHODIN, ACP, POLYKETIDE MIMIC, LIGAND RECOGNITION, BIOSYNTHETIC KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.DONG,C.BAILEY,C.WILLIAMS,J.CROSBY,T.J.SIMPSON,C.L.WILLIS,M.P.CRUMP REVDAT 1 21-OCT-15 2MVV 0 JRNL AUTH X.DONG,C.BAILEY,C.WILLIAMS,J.CROSBY,T.J.SIMPSON,C.L.WILLIS, JRNL AUTH 2 M.P.CRUMP JRNL TITL ACP-LIGAND RECOGNITION: SELECTION OF DERIVATIZED AROMATIC JRNL TITL 2 BIOSYNTHETIC INTERMEDIATES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LOWEST ENERGY STRUCTURES WERE FURTHER REMARK 3 REFINED IN EXPLICIT WATER USING THE RECOORD PROTOCOL REMARK 4 REMARK 4 2MVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-14. REMARK 100 THE RCSB ID CODE IS RCSB104108. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2, ANALYSIS V1.15, CNS REMARK 210 1.2, VNMR, NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TYR A 40 CE1 TYR A 40 CZ -0.149 REMARK 500 1 TYR A 40 CZ TYR A 40 CE2 0.155 REMARK 500 1 TYR A 56 CE1 TYR A 56 CZ -0.079 REMARK 500 5 TYR A 40 CE1 TYR A 40 CZ 0.117 REMARK 500 5 TYR A 40 CZ TYR A 40 CE2 -0.116 REMARK 500 5 TYR A 56 CZ TYR A 56 OH 0.124 REMARK 500 5 TYR A 56 CZ TYR A 56 CE2 0.150 REMARK 500 9 TYR A 40 CE1 TYR A 40 CZ -0.093 REMARK 500 9 TYR A 40 CZ TYR A 40 CE2 0.092 REMARK 500 10 TYR A 56 CE1 TYR A 56 CZ -0.095 REMARK 500 10 TYR A 56 CZ TYR A 56 CE2 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 TYR A 56 OH - CZ - CE2 ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 18 -81.12 -108.39 REMARK 500 1 GLU A 20 -74.56 -157.91 REMARK 500 1 THR A 21 48.13 -92.67 REMARK 500 1 ASP A 22 7.75 -155.42 REMARK 500 1 ASP A 41 -91.61 -85.33 REMARK 500 1 SER A 42 -49.00 -151.81 REMARK 500 2 ASP A 25 94.40 -63.05 REMARK 500 2 ALA A 85 -69.22 -98.95 REMARK 500 3 ASP A 22 109.69 -58.67 REMARK 500 3 THR A 24 -147.24 42.89 REMARK 500 3 PHE A 30 16.32 -167.47 REMARK 500 4 THR A 21 -152.58 -132.23 REMARK 500 5 ASP A 25 177.90 68.04 REMARK 500 5 LEU A 26 -57.11 176.77 REMARK 500 5 SER A 27 -104.97 49.04 REMARK 500 5 ASP A 69 -33.56 -140.71 REMARK 500 5 ALA A 85 -60.33 -105.77 REMARK 500 6 ALA A 2 89.26 -161.24 REMARK 500 6 THR A 24 127.92 -171.87 REMARK 500 6 ASP A 25 -169.96 78.48 REMARK 500 6 ASP A 29 -170.37 67.59 REMARK 500 6 PHE A 30 -7.57 172.31 REMARK 500 7 ASP A 22 -47.27 -158.26 REMARK 500 7 LEU A 26 25.17 -144.52 REMARK 500 8 THR A 3 73.98 -151.60 REMARK 500 8 LEU A 26 -70.06 -104.43 REMARK 500 8 SER A 27 -62.09 67.93 REMARK 500 8 PHE A 30 -21.07 -168.69 REMARK 500 9 GLU A 20 -78.52 -81.74 REMARK 500 9 ASP A 22 -78.15 -159.92 REMARK 500 9 SER A 27 -85.42 55.75 REMARK 500 9 ASP A 41 -88.63 -79.35 REMARK 500 9 SER A 42 -50.05 -142.29 REMARK 500 10 THR A 21 -153.71 -97.92 REMARK 500 10 ASP A 22 90.58 57.47 REMARK 500 10 PHE A 30 17.04 -140.08 REMARK 500 10 ASP A 41 -92.49 -98.91 REMARK 500 10 SER A 42 -36.41 -148.86 REMARK 500 11 ALA A 18 -61.49 -105.75 REMARK 500 11 THR A 21 -157.14 -138.51 REMARK 500 11 ASP A 41 -75.45 -67.19 REMARK 500 11 SER A 42 -52.84 -165.81 REMARK 500 11 ASP A 69 -42.41 -137.24 REMARK 500 12 LEU A 26 37.54 -141.70 REMARK 500 12 ASP A 41 -70.76 -81.25 REMARK 500 12 SER A 42 -54.55 -170.07 REMARK 500 13 THR A 24 -148.73 -149.39 REMARK 500 14 ASP A 22 104.09 65.62 REMARK 500 14 THR A 24 48.63 -78.96 REMARK 500 14 ASP A 25 30.12 -83.92 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 TYR A 56 0.14 SIDE CHAIN REMARK 500 6 ARG A 72 0.07 SIDE CHAIN REMARK 500 10 TYR A 40 0.07 SIDE CHAIN REMARK 500 11 TYR A 56 0.06 SIDE CHAIN REMARK 500 13 TYR A 56 0.06 SIDE CHAIN REMARK 500 15 TYR A 56 0.09 SIDE CHAIN REMARK 500 16 TYR A 56 0.05 SIDE CHAIN REMARK 500 17 TYR A 56 0.06 SIDE CHAIN REMARK 500 18 TYR A 56 0.05 SIDE CHAIN REMARK 500 19 ARG A 67 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SXR A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25287 RELATED DB: BMRB REMARK 900 RELATED ID: 2MVU RELATED DB: PDB DBREF 2MVV A 1 86 UNP Q02054 ACPX_STRCO 1 86 SEQADV 2MVV SER A 17 UNP Q02054 CYS 17 ENGINEERED MUTATION SEQRES 1 A 86 MET ALA THR LEU LEU THR THR ASP ASP LEU ARG ARG ALA SEQRES 2 A 86 LEU VAL GLU SER ALA GLY GLU THR ASP GLY THR ASP LEU SEQRES 3 A 86 SER GLY ASP PHE LEU ASP LEU ARG PHE GLU ASP ILE GLY SEQRES 4 A 86 TYR ASP SER LEU ALA LEU MET GLU THR ALA ALA ARG LEU SEQRES 5 A 86 GLU SER ARG TYR GLY VAL SER ILE PRO ASP ASP VAL ALA SEQRES 6 A 86 GLY ARG VAL ASP THR PRO ARG GLU LEU LEU ASP LEU ILE SEQRES 7 A 86 ASN GLY ALA LEU ALA GLU ALA ALA HET SXR A 101 66 HETNAM SXR N~3~-{(2S)-4-[(DIHYDROXYPHOSPHANYL)OXY]-2-HYDROXY-3,3- HETNAM 2 SXR DIMETHYLBUTANOYL}-N-{2-[(3-OXO-5-PHENYLPENTYL) HETNAM 3 SXR SULFANYL]ETHYL}-BETA-ALANINAMIDE FORMUL 2 SXR C22 H35 N2 O7 P S HELIX 1 1 THR A 6 SER A 17 1 12 HELIX 2 2 PHE A 35 GLY A 39 5 5 HELIX 3 3 SER A 42 GLY A 57 1 16 HELIX 4 4 PRO A 61 GLY A 66 1 6 HELIX 5 5 THR A 70 ALA A 86 1 17 LINK OG SER A 42 P24 SXR A 101 1555 1555 1.55 SITE 1 AC1 4 SER A 42 LEU A 43 MET A 46 ALA A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20