HEADER TRANSFERASE 30-MAY-07 2V1Y TITLE STRUCTURE OF A PHOSPHOINOSITIDE 3-KINASE ALPHA ADAPTOR- TITLE 2 BINDING DOMAIN (ABD) IN A COMPLEX WITH THE ISH2 DOMAIN TITLE 3 FROM P85 ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT ALPHA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: ADAPTOR-BINDING DOMAIN, RESIDUES 1-108; COMPND 6 SYNONYM: PHOSPHOINOSITIDE 3-KINASE P110 ALPHA, PI3-KINASE P110 COMPND 7 SUBUNIT ALPHA, PTDINS-3-KINASE P110, PI3K; COMPND 8 EC: 2.7.1.153; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT ALPHA; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: INTER-SH2 DOMAIN (ISH2), RESIDUES 431-600; COMPND 14 SYNONYM: PHOSPHOINOSITIDE 3-KINASE P85 ALPHA, PI3-KINASE COMPND 15 P85-SUBUNIT ALPHA, PTDINS-3-KINASE P85-ALPHA, PI3K; COMPND 16 EC: 2.7.1.153; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPCG; SOURCE 9 OTHER_DETAILS: CHAIN A IS THE ADAPTOR-BINDING DOMAIN FROM BOVINE SOURCE 10 P110 ALPHA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: POPCG; SOURCE 19 OTHER_DETAILS: CHAIN B IS THE ISH2 DOMAIN FROM HUMAN P85 ALPHA KEYWDS KINASE, CANCER, SH2 DOMAIN, SH3 DOMAIN, TRANSFERASE, ONCOGENIC KEYWDS 2 MUTATIONS, HOST-VIRUS INTERACTION, PHOSPHORYLATION, DISEASE KEYWDS 3 MUTATION, PHOSPHOINOSITIDE, PHOSPHOLIPID, PHOSPHOLIPID SIGNALLING, KEYWDS 4 PHOSPHOINOSITIDE 3-KINASE, SIGNAL TRANSDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.MILED,Y.YAN,W.C.HON,O.PERISIC,M.ZVELEBIL,Y.INBAR, AUTHOR 2 D.SCHNEIDMAN-DUHOVNY,H.J.WOLFSON,J.M.BACKER,R.L.WILLIAMS REVDAT 3 13-JUL-11 2V1Y 1 VERSN REVDAT 2 24-FEB-09 2V1Y 1 VERSN REVDAT 1 24-JUL-07 2V1Y 0 JRNL AUTH N.MILED,Y.YAN,W.C.HON,O.PERISIC,M.ZVELEBIL,Y.INBAR, JRNL AUTH 2 D.SCHNEIDMAN-DUHOVNY,H.J.WOLFSON,J.M.BACKER,R.L.WILLIAMS JRNL TITL MECHANISM OF TWO CLASSES OF CANCER MUTATIONS IN THE JRNL TITL 2 PHOSPHOINOSITIDE 3-KINASE CATALYTIC SUBUNIT. JRNL REF SCIENCE V. 317 239 2007 JRNL REFN ISSN 0036-8075 JRNL PMID 17626883 JRNL DOI 10.1126/SCIENCE.1135394 REMARK 2 REMARK 2 RESOLUTION. 2.4 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOODWITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 10385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 2.03000 REMARK 3 B33 (A**2) : -2.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.710 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.333 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.151 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2252 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2056 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3016 ; 1.259 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4812 ; 0.785 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 5.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2437 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 455 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 472 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2149 ; 0.226 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1399 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 24 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.279 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1300 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ; 1.371 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 952 ; 1.951 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 904 ; 3.344 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7028 60.6671 13.9575 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0611 REMARK 3 T33: 0.0610 T12: -0.0112 REMARK 3 T13: -0.0054 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.3613 L22: 2.1215 REMARK 3 L33: 4.0073 L12: -0.3209 REMARK 3 L13: -0.0497 L23: -0.4172 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.0167 S13: 0.1847 REMARK 3 S21: 0.0639 S22: 0.0261 S23: 0.0007 REMARK 3 S31: -0.1550 S32: 0.2064 S33: 0.0428 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 431 B 441 REMARK 3 ORIGIN FOR THE GROUP (A): 99.0090 18.2357 -38.9518 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1347 REMARK 3 T33: 0.1349 T12: 0.0000 REMARK 3 T13: 0.0000 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: -2.1467 L22: 17.1876 REMARK 3 L33: 16.3640 L12: -7.8631 REMARK 3 L13: 8.5315 L23: -4.3085 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.2970 S13: 0.7349 REMARK 3 S21: -0.7157 S22: -0.0213 S23: -0.9146 REMARK 3 S31: 0.8358 S32: 0.2984 S33: 0.0651 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 442 B 510 REMARK 3 ORIGIN FOR THE GROUP (A): 65.7886 51.3096 -14.1316 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0674 REMARK 3 T33: 0.0523 T12: 0.0242 REMARK 3 T13: 0.0070 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 11.8007 L22: 4.7197 REMARK 3 L33: 8.5633 L12: -7.4162 REMARK 3 L13: -9.9108 L23: 6.4762 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: -0.0816 S13: 0.0066 REMARK 3 S21: -0.1183 S22: -0.0631 S23: -0.0240 REMARK 3 S31: -0.1811 S32: 0.0674 S33: -0.0386 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 518 B 595 REMARK 3 ORIGIN FOR THE GROUP (A): 68.3194 51.0904 -17.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.1935 T22: 0.1194 REMARK 3 T33: 0.1689 T12: 0.0328 REMARK 3 T13: 0.0098 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.4606 L22: 0.3168 REMARK 3 L33: 1.9573 L12: -0.9912 REMARK 3 L13: -1.7539 L23: 1.2591 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: 0.0494 S13: 0.1386 REMARK 3 S21: 0.0013 S22: 0.0680 S23: -0.1324 REMARK 3 S31: -0.0397 S32: -0.0079 S33: -0.0982 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 596 B 600 REMARK 3 ORIGIN FOR THE GROUP (A): 97.4341 33.6587 -31.2563 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1348 REMARK 3 T33: 0.1340 T12: 0.0019 REMARK 3 T13: -0.0004 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 28.1263 L22: 5.5963 REMARK 3 L33: 7.6572 L12: -13.9074 REMARK 3 L13: 21.6391 L23: -4.8044 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: 0.3890 S13: 1.5863 REMARK 3 S21: 1.2639 S22: -0.2303 S23: -2.3947 REMARK 3 S31: -0.0248 S32: -0.3748 S33: 0.3029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2V1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-07. REMARK 100 THE PDBE ID CODE IS EBI-32745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794,0.9393 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.530 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.58 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MG(NO3)2, 20% PEG3350 REMARK 280 (HAMPTON), 5MM TRIS-HCL PH 7.0 (25C), 5% GLYCEROL AND 5MM REMARK 280 FRESH DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.39950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.32700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.32700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.39950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 PHOSPHORYLATES PTDINS, PTDINS4P AND PTDINS(4,5)P2. REMARK 400 BINDS TO ACTIVATED (PHOSPHORYLATED) PROTEIN-TYR KINASES, REMARK 400 THROUGH ITS SH2 DOMAIN, AND ACTS AS AN ADAPTER, MEDIATING THE REMARK 400 ASSOCIATION OF THE P110 CATALYTIC UNIT TO THE PLASMA MEMBRANE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 GLU A 9 REMARK 465 LEU A 10 REMARK 465 TRP A 11 REMARK 465 GLY A 12 REMARK 465 ILE A 13 REMARK 465 HIS A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 106 REMARK 465 ASN A 107 REMARK 465 ARG A 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 105 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 540 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 569 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 578 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A0N RELATED DB: PDB REMARK 900 NMR STUDY OF THE SH3 DOMAIN FROM FYN REMARK 900 PROTO-ONCOGENE TYROSINE KINASE COMPLEXED WITH REMARK 900 THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO REMARK 900 RESIDUES 91-104 OF THE P85 SUBUNIT OF REMARK 900 PI3-KINASE, FAMILY OF 25 STRUCTURES REMARK 900 RELATED ID: 1AZG RELATED DB: PDB REMARK 900 NMR STUDY OF THE SH3 DOMAIN FROM FYN REMARK 900 PROTO-ONCOGENE TYROSINE KINASE KINASE REMARK 900 COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L REMARK 900 CORRESPONDING TO RESIDUES 91-104 OF THE REMARK 900 P85 SUBUNIT OF PI3-KINASE, MINIMIZED AVERAGE REMARK 900 (PROBMAP) STRUCTURE REMARK 900 RELATED ID: 1H9O RELATED DB: PDB REMARK 900 PHOSPHATIDYLINOSITOL 3-KINASE, P85-ALPHA REMARK 900 SUBUNIT: C-TERMINAL SH2 DOMAIN COMPLEXED REMARK 900 WITH A TYR751 PHOSPHOPEPTIDE FROM THE PDGF REMARK 900 RECEPTOR, CRYSTAL STRUCTURE AT 1.79 A REMARK 900 RELATED ID: 1PBW RELATED DB: PDB REMARK 900 STRUCTURE OF BCR-HOMOLOGY (BH) DOMAIN REMARK 900 RELATED ID: 1PHT RELATED DB: PDB REMARK 900 PHOSPHATIDYLINOSITOL 3-KINASE P85-ALPHA REMARK 900 SUBUNIT SH3 DOMAIN, RESIDUES 1-85 REMARK 900 RELATED ID: 1PIC RELATED DB: PDB REMARK 900 PHOSPHATIDYLINOSITOL 3-KINASE, P85-ALPHA REMARK 900 SUBUNIT: C-TERMINAL SH2 DOMAIN COMPLEXED REMARK 900 WITH A TYR751 PHOSPHOPEPTIDE FROM THE PDGF REMARK 900 RECEPTOR, NMR, MINIMIZED MEAN STRUCTURE REMARK 900 RELATED ID: 1PKS RELATED DB: PDB REMARK 900 PHOSPHATIDYLINOSITOL 3-KINASE (PI3K) (SH3 REMARK 900 DOMAIN) (NMR, MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1PKT RELATED DB: PDB REMARK 900 PHOSPHATIDYLINOSITOL 3-KINASE (PI3K) (SH3 REMARK 900 DOMAIN) (NMR, 30 STRUCTURES) REMARK 900 RELATED ID: 2IUG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PI3-KINASE P85 N REMARK 900 -TERMINAL SH2 DOMAIN REMARK 900 RELATED ID: 2IUH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PI3-KINASE P85 N REMARK 900 -TERMINAL SH2 DOMAIN IN COMPLEX WITH C- REMARK 900 KIT PHOSPHOTYROSYL PEPTIDE REMARK 900 RELATED ID: 2IUI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PI3-KINASE P85 N REMARK 900 -TERMINAL SH2 DOMAIN IN COMPLEX WITH PDGFR REMARK 900 PHOSPHOTYROSYL PEPTIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADAPTOR-BINDING DOMAIN, RESIDUES 1-108 REMARK 999 RESIDUES 431-600 OF HUMAN P85 ALPHA DBREF 2V1Y A 1 108 UNP P32871 PK3CA_BOVIN 1 108 DBREF 2V1Y B 431 600 UNP P27986 P85A_HUMAN 431 600 SEQADV 2V1Y LYS B 451 UNP P27986 GLU 451 CONFLICT SEQRES 1 A 108 MSE PRO PRO ARG PRO SER SER GLY GLU LEU TRP GLY ILE SEQRES 2 A 108 HIS LEU MSE PRO PRO ARG ILE LEU VAL GLU CYS LEU LEU SEQRES 3 A 108 PRO ASN GLY MSE ILE VAL THR LEU GLU CYS LEU ARG GLU SEQRES 4 A 108 ALA THR LEU ILE THR ILE LYS HIS GLU LEU PHE LYS GLU SEQRES 5 A 108 ALA ARG LYS TYR PRO LEU HIS GLN LEU LEU GLN ASP GLU SEQRES 6 A 108 SER SER TYR ILE PHE VAL SER VAL THR GLN GLU ALA GLU SEQRES 7 A 108 ARG GLU GLU PHE PHE ASP GLU THR ARG ARG LEU CYS ASP SEQRES 8 A 108 LEU ARG LEU PHE GLN PRO PHE LEU LYS VAL ILE GLU PRO SEQRES 9 A 108 VAL GLY ASN ARG SEQRES 1 B 170 TYR GLN GLN ASP GLN VAL VAL LYS GLU ASP ASN ILE GLU SEQRES 2 B 170 ALA VAL GLY LYS LYS LEU HIS LYS TYR ASN THR GLN PHE SEQRES 3 B 170 GLN GLU LYS SER ARG GLU TYR ASP ARG LEU TYR GLU GLU SEQRES 4 B 170 TYR THR ARG THR SER GLN GLU ILE GLN MSE LYS ARG THR SEQRES 5 B 170 ALA ILE GLU ALA PHE ASN GLU THR ILE LYS ILE PHE GLU SEQRES 6 B 170 GLU GLN CYS GLN THR GLN GLU ARG TYR SER LYS GLU TYR SEQRES 7 B 170 ILE GLU LYS PHE LYS ARG GLU GLY ASN GLU LYS GLU ILE SEQRES 8 B 170 GLN ARG ILE MSE HIS ASN TYR ASP LYS LEU LYS SER ARG SEQRES 9 B 170 ILE SER GLU ILE ILE ASP SER ARG ARG ARG LEU GLU GLU SEQRES 10 B 170 ASP LEU LYS LYS GLN ALA ALA GLU TYR ARG GLU ILE ASP SEQRES 11 B 170 LYS ARG MSE ASN SER ILE LYS PRO ASP LEU ILE GLN LEU SEQRES 12 B 170 ARG LYS THR ARG ASP GLN TYR LEU MSE TRP LEU THR GLN SEQRES 13 B 170 LYS GLY VAL ARG GLN LYS LYS LEU ASN GLU TRP LEU GLY SEQRES 14 B 170 ASN MODRES 2V1Y MSE A 16 MET SELENOMETHIONINE MODRES 2V1Y MSE A 30 MET SELENOMETHIONINE MODRES 2V1Y MSE B 479 MET SELENOMETHIONINE MODRES 2V1Y MSE B 525 MET SELENOMETHIONINE MODRES 2V1Y MSE B 563 MET SELENOMETHIONINE MODRES 2V1Y MSE B 582 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 30 8 HET MSE B 479 8 HET MSE B 525 8 HET MSE B 563 8 HET MSE B 582 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HOH *17(H2 O) HELIX 1 1 THR A 41 ALA A 53 1 13 HELIX 2 2 ARG A 54 TYR A 56 5 3 HELIX 3 3 LEU A 58 LEU A 62 5 5 HELIX 4 4 ASP A 64 TYR A 68 5 5 HELIX 5 5 LEU A 89 LEU A 92 5 4 HELIX 6 6 LYS B 438 LYS B 513 1 76 HELIX 7 7 ASN B 517 LYS B 587 1 71 HELIX 8 8 ARG B 590 GLY B 599 1 10 SHEET 1 AA 5 ILE A 31 LEU A 37 0 SHEET 2 AA 5 ARG A 19 LEU A 25 -1 O ILE A 20 N CYS A 36 SHEET 3 AA 5 PHE A 98 ILE A 102 1 O LEU A 99 N LEU A 25 SHEET 4 AA 5 ILE A 69 VAL A 73 -1 O ILE A 69 N ILE A 102 SHEET 5 AA 5 ARG A 79 PHE A 82 -1 O GLU A 80 N SER A 72 LINK C MSE A 16 N PRO A 17 1555 1555 1.34 LINK C GLY A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N ILE A 31 1555 1555 1.33 LINK C GLN B 478 N MSE B 479 1555 1555 1.32 LINK C MSE B 479 N LYS B 480 1555 1555 1.33 LINK C ILE B 524 N MSE B 525 1555 1555 1.33 LINK C MSE B 525 N HIS B 526 1555 1555 1.32 LINK C ARG B 562 N MSE B 563 1555 1555 1.33 LINK C MSE B 563 N ASN B 564 1555 1555 1.33 LINK C LEU B 581 N MSE B 582 1555 1555 1.33 LINK C MSE B 582 N TRP B 583 1555 1555 1.33 CRYST1 58.799 62.000 74.654 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013395 0.00000