HEADER CELL CYCLE 10-OCT-08 3EUJ TITLE CRYSTAL STRUCTURE OF MUKE-MUKF(RESIDUES 292-443)-MUKB(HEAD DOMAIN)- TITLE 2 ATPGAMMAS COMPLEX, SYMMETRIC DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOME PARTITION PROTEIN MUKB, LINKER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD DOMAIN; COMPND 5 SYNONYM: STRUCTURAL MAINTENANCE OF CHROMOSOME-RELATED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CHROMOSOME PARTITION PROTEIN MUKF; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 292-443; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS DUCREYI (STRAIN 35000HP / ATCC SOURCE 3 700724); SOURCE 4 ORGANISM_TAXID: 233412; SOURCE 5 GENE: MUKB, HD_1582; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HAEMOPHILUS DUCREYI; SOURCE 13 ORGANISM_TAXID: 730; SOURCE 14 GENE: MUKF, HD_1585; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS MUKB, MUKE, MUKF, CHROMOSOME CONDENSATION, CONDENSIN, SMC, NON-SMC KEYWDS 2 SUBUNIT, ABC-TYPE ATPASE, WHD, ATP-BINDING, CELL CYCLE, CELL KEYWDS 3 DIVISION, CHROMOSOME PARTITION, DNA CONDENSATION, DNA-BINDING, KEYWDS 4 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.S.WOO,J.H.LIM,H.C.SHIN,B.H.OH REVDAT 7 27-DEC-23 3EUJ 1 REMARK REVDAT 6 10-NOV-21 3EUJ 1 REMARK SEQADV REVDAT 5 25-OCT-17 3EUJ 1 REMARK REVDAT 4 28-JUN-17 3EUJ 1 SOURCE REVDAT 3 15-FEB-12 3EUJ 1 HET HETATM VERSN REVDAT 2 05-JAN-10 3EUJ 1 JRNL REVDAT 1 20-JAN-09 3EUJ 0 JRNL AUTH J.S.WOO,J.H.LIM,H.C.SHIN,M.K.SUH,B.KU,K.H.LEE,K.JOO, JRNL AUTH 2 H.ROBINSON,J.LEE,S.Y.PARK,N.C.HA,B.H.OH JRNL TITL STRUCTURAL STUDIES OF A BACTERIAL CONDENSIN COMPLEX REVEAL JRNL TITL 2 ATP-DEPENDENT DISRUPTION OF INTERSUBUNIT INTERACTIONS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 85 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19135891 JRNL DOI 10.1016/J.CELL.2008.10.050 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 24409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.06800 REMARK 3 B22 (A**2) : -35.04700 REMARK 3 B33 (A**2) : 14.97900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.561 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.819 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.779 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.986 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ATG.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE MATTEWS COEFFINCIENT AND SOLVENT CONTENT HAVE BEEN CALCULATED REMARK 3 WITH REMARK 3 THE TOTAL MOLECULAR WEIGHT OF ALL MOLECULES IN THE ASYMMETRIC UNIT REMARK 3 OF REMARK 3 THE CRYSTAL, INCLUDING TWO MUKE MOLECULES AND ALL MISSING RESIDUES REMARK 3 OF REMARK 3 MUKF AND MUKB. REMARK 4 REMARK 4 3EUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-07; 02-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PAL/PLS; PAL/PLS REMARK 200 BEAMLINE : 4A; 4A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 1.0064 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24721 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7510 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.16300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: REMARK 200 THE CRYSTAL CONTAINS MUKE MOLECULES, BUT THE MODEL OF MUKE WAS NOT REMARK 200 BUILT REMARK 200 IN THIS STRUCTURE BECAUSE THE PROTEIN EXHIBITED ONLY BLOBS OF REMARK 200 ELECTRON DENSITIES. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SUCCINATE, PH 7.0, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.24800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.24800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 58.52200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.24800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 30 REMARK 465 HIS A 31 REMARK 465 MET A 264 REMARK 465 GLU A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 LEU A 268 REMARK 465 ARG A 269 REMARK 465 GLU A 270 REMARK 465 ASN A 271 REMARK 465 SER A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 ILE A 1263 REMARK 465 SER A 1264 REMARK 465 HIS A 1322 REMARK 465 GLU A 1323 REMARK 465 GLN A 1324 REMARK 465 HIS A 1325 REMARK 465 LYS A 1326 REMARK 465 ASP A 1327 REMARK 465 LEU A 1328 REMARK 465 PHE A 1329 REMARK 465 GLU A 1330 REMARK 465 SER A 1331 REMARK 465 GLN A 1332 REMARK 465 LYS A 1333 REMARK 465 LEU A 1334 REMARK 465 ASN A 1348 REMARK 465 PRO A 1349 REMARK 465 HIS A 1350 REMARK 465 ILE A 1351 REMARK 465 GLU A 1352 REMARK 465 LEU A 1353 REMARK 465 GLY A 1354 REMARK 465 GLN A 1355 REMARK 465 ARG A 1356 REMARK 465 MET A 1357 REMARK 465 PRO A 1358 REMARK 465 GLN A 1359 REMARK 465 THR A 1360 REMARK 465 ILE A 1361 REMARK 465 MET B 292 REMARK 465 ASP B 293 REMARK 465 LYS B 294 REMARK 465 ASN B 295 REMARK 465 ARG B 296 REMARK 465 VAL B 297 REMARK 465 PHE B 298 REMARK 465 GLY B 299 REMARK 465 GLN B 300 REMARK 465 ARG B 301 REMARK 465 LEU B 302 REMARK 465 ARG B 303 REMARK 465 GLN B 304 REMARK 465 SER B 305 REMARK 465 ILE B 306 REMARK 465 GLN B 307 REMARK 465 ASN B 308 REMARK 465 TYR B 309 REMARK 465 PHE B 310 REMARK 465 SER B 311 REMARK 465 SER B 312 REMARK 465 PRO B 313 REMARK 465 TRP B 314 REMARK 465 LEU B 315 REMARK 465 LEU B 316 REMARK 465 TYR B 317 REMARK 465 THR B 318 REMARK 465 ALA B 319 REMARK 465 LYS B 320 REMARK 465 ALA B 321 REMARK 465 GLU B 322 REMARK 465 ALA B 323 REMARK 465 LEU B 324 REMARK 465 LEU B 325 REMARK 465 ASP B 326 REMARK 465 LEU B 327 REMARK 465 ARG B 328 REMARK 465 ASP B 329 REMARK 465 ASP B 330 REMARK 465 GLU B 331 REMARK 465 ALA B 332 REMARK 465 MET B 333 REMARK 465 LEU B 334 REMARK 465 ASN B 335 REMARK 465 GLU B 336 REMARK 465 MET B 337 REMARK 465 GLU B 338 REMARK 465 ALA B 339 REMARK 465 VAL B 340 REMARK 465 GLY B 341 REMARK 465 GLU B 342 REMARK 465 LEU B 343 REMARK 465 PRO B 344 REMARK 465 MET B 345 REMARK 465 ALA B 346 REMARK 465 LEU B 347 REMARK 465 GLU B 348 REMARK 465 TYR B 349 REMARK 465 GLU B 350 REMARK 465 SER B 351 REMARK 465 LEU B 352 REMARK 465 THR B 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 32 SD MET A 32 CE 0.358 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 59 -67.19 -137.70 REMARK 500 ALA A 76 -71.27 -63.57 REMARK 500 PRO A 84 49.61 -77.04 REMARK 500 LEU A 89 107.91 -36.30 REMARK 500 ALA A 97 -70.03 -95.92 REMARK 500 ARG A 104 157.67 -36.22 REMARK 500 ALA A 128 24.86 47.29 REMARK 500 ALA A 141 80.22 -17.34 REMARK 500 ASP A 144 -139.55 -114.55 REMARK 500 GLU A 169 -161.91 -106.58 REMARK 500 ASN A 173 14.97 59.44 REMARK 500 GLU A 185 -73.88 -41.06 REMARK 500 LYS A 186 -37.02 -30.56 REMARK 500 GLU A 189 49.09 -88.21 REMARK 500 ILE A 212 -55.35 -127.87 REMARK 500 ARG A 247 36.37 -81.81 REMARK 500 LEU A 250 -68.82 -133.32 REMARK 500 SER A 255 70.97 -69.73 REMARK 500 PHE A 261 -66.65 -106.95 REMARK 500 LYS A1274 8.27 -64.89 REMARK 500 LEU A1290 28.20 -153.39 REMARK 500 ASN A1292 69.34 -104.88 REMARK 500 ALA A1294 78.02 -159.75 REMARK 500 LEU A1318 -8.25 -58.15 REMARK 500 SER A1319 -63.20 -106.45 REMARK 500 GLU A1375 117.73 -179.68 REMARK 500 ALA A1382 -81.19 -112.11 REMARK 500 SER A1391 -38.58 -37.01 REMARK 500 ARG A1419 -73.24 -68.48 REMARK 500 MET A1420 9.34 -57.14 REMARK 500 ALA A1422 -173.64 -58.82 REMARK 500 PRO A1427 159.52 -44.77 REMARK 500 LEU A1433 90.84 -171.90 REMARK 500 ASP A1455 73.83 50.09 REMARK 500 ASN B 372 -73.60 -52.66 REMARK 500 THR B 373 -137.66 -54.87 REMARK 500 GLN B 375 106.08 -56.34 REMARK 500 ASN B 378 70.92 -104.16 REMARK 500 LEU B 379 -27.75 -32.14 REMARK 500 GLN B 392 -1.14 -47.89 REMARK 500 LEU B 409 43.81 -70.78 REMARK 500 GLN B 414 0.61 -57.90 REMARK 500 TRP B 423 109.97 -55.29 REMARK 500 ASP B 427 174.10 60.57 REMARK 500 PHE B 429 -122.14 -138.72 REMARK 500 ASP B 439 -91.34 -62.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2011 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 72 OG REMARK 620 2 AGS A2001 O2G 99.8 REMARK 620 3 AGS A2001 O2A 101.4 116.5 REMARK 620 4 AGS A2001 O1B 68.7 63.1 70.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2011 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EUH RELATED DB: PDB REMARK 900 RELATED ID: 3EUK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE RESIDUES ARE NATURAL GENETIC VARIANTS, POLYMORPHISMS. DBREF 3EUJ A 33 271 UNP Q7VL96 MUKB_HAEDU 33 271 DBREF 3EUJ A 272 278 PDB 3EUJ 3EUJ 272 278 DBREF 3EUJ A 1263 1496 UNP Q7VL96 MUKB_HAEDU 1263 1496 DBREF 3EUJ B 292 443 UNP Q7VL94 MUKF_HAEDU 292 443 SEQADV 3EUJ GLY A 30 UNP Q7VL96 EXPRESSION TAG SEQADV 3EUJ HIS A 31 UNP Q7VL96 EXPRESSION TAG SEQADV 3EUJ MET A 32 UNP Q7VL96 EXPRESSION TAG SEQADV 3EUJ THR A 160 UNP Q7VL96 ALA 160 SEE REMARK 999 SEQADV 3EUJ ILE A 1347 UNP Q7VL96 VAL 1347 SEE REMARK 999 SEQADV 3EUJ TYR A 1383 UNP Q7VL96 ASP 1383 SEE REMARK 999 SEQADV 3EUJ GLN A 1435 UNP Q7VL96 GLU 1435 ENGINEERED MUTATION SEQADV 3EUJ ARG A 1470 UNP Q7VL96 HIS 1470 SEE REMARK 999 SEQADV 3EUJ ASN B 372 UNP Q7VL94 ASP 372 SEE REMARK 999 SEQADV 3EUJ GLN B 384 UNP Q7VL94 ARG 384 SEE REMARK 999 SEQRES 1 A 483 GLY HIS MET ILE ALA ARG GLY LYS PHE ARG SER LEU THR SEQRES 2 A 483 LEU ILE ASN TRP ASN GLY PHE PHE ALA ARG THR PHE ASP SEQRES 3 A 483 PHE ASP GLU LEU VAL THR THR LEU SER GLY GLY ASN GLY SEQRES 4 A 483 ALA GLY LYS SER THR THR MET ALA GLY PHE VAL THR ALA SEQRES 5 A 483 LEU ILE PRO ASP LEU THR LEU LEU ASN PHE ARG ASN THR SEQRES 6 A 483 THR GLU ALA GLY SER THR SER SER SER ARG ASP LYS GLY SEQRES 7 A 483 LEU TYR GLY LYS LEU LYS ALA GLY VAL CYS TYR ALA VAL SEQRES 8 A 483 LEU GLU THR VAL ASN SER ARG ALA GLN ARG ILE ILE THR SEQRES 9 A 483 GLY VAL ARG LEU GLN GLN ILE ALA GLY ARG ASP LYS LYS SEQRES 10 A 483 VAL ASP ILE ARG PRO PHE SER LEU GLN ASN VAL PRO MET SEQRES 11 A 483 THR ASP SER VAL ILE SER LEU PHE THR GLU GLN VAL ALA SEQRES 12 A 483 ASN LYS ALA ARG VAL LEU SER LEU ASN ASP LEU LYS GLU SEQRES 13 A 483 LYS PHE GLU GLU THR ALA VAL THR PHE LYS PRO TYR HIS SEQRES 14 A 483 SER ILE THR ASP TYR HIS SER PHE MET PHE ASP LEU GLY SEQRES 15 A 483 ILE LEU PRO LYS ARG LEU ARG SER SER SER ASP ARG ASN SEQRES 16 A 483 LYS PHE TYR LYS LEU ILE GLU ALA SER LEU TYR GLY GLY SEQRES 17 A 483 ILE SER SER VAL ILE THR LYS SER LEU ARG ASP TYR LEU SEQRES 18 A 483 LEU PRO GLU ASN SER GLY VAL ARG GLN ALA PHE GLN ASP SEQRES 19 A 483 MET GLU ALA ALA LEU ARG GLU ASN SER GLY GLY SER GLY SEQRES 20 A 483 GLY SER ILE SER ALA GLU SER VAL ALA ASN ILE LEU ARG SEQRES 21 A 483 LYS THR ILE GLN ARG GLU GLN ASN ARG ILE LEU GLN LEU SEQRES 22 A 483 ASN GLN GLY LEU GLN ASN ILE ALA PHE GLY GLN VAL LYS SEQRES 23 A 483 GLY VAL ARG LEU VAL VAL ASN ILE ARG ASP THR HIS SER SEQRES 24 A 483 ILE LEU LEU ASN ALA LEU SER ASP GLN HIS GLU GLN HIS SEQRES 25 A 483 LYS ASP LEU PHE GLU SER GLN LYS LEU SER PHE SER GLU SEQRES 26 A 483 ALA LEU ALA MET LEU TYR LYS ARG ILE ASN PRO HIS ILE SEQRES 27 A 483 GLU LEU GLY GLN ARG MET PRO GLN THR ILE GLY GLU GLU SEQRES 28 A 483 LEU LEU ASP TYR ARG ASN TYR LEU ASP LEU GLU VAL GLU SEQRES 29 A 483 THR LEU ARG GLY ALA TYR GLY TRP MET ARG ALA GLU SER SEQRES 30 A 483 SER ALA LEU SER THR GLY GLU ALA ILE GLY THR GLY MET SEQRES 31 A 483 SER ILE LEU LEU MET VAL VAL GLN SER TRP GLU GLU GLU SEQRES 32 A 483 SER ARG ARG MET ARG ALA LYS ASP ILE LEU PRO CYS ARG SEQRES 33 A 483 LEU LEU PHE LEU ASP GLN ALA ALA ARG LEU ASP ALA MET SEQRES 34 A 483 SER ILE ASN THR LEU PHE GLU LEU CYS GLU ARG LEU ASP SEQRES 35 A 483 MET GLN LEU LEU ILE ALA ALA PRO GLU ASN ILE SER PRO SEQRES 36 A 483 GLU ARG GLY THR THR TYR LYS LEU VAL ARG LYS ILE LEU SEQRES 37 A 483 ALA ASN GLN GLU TYR VAL HIS VAL VAL GLY LEU LYS GLY SEQRES 38 A 483 PHE GLY SEQRES 1 B 152 MET ASP LYS ASN ARG VAL PHE GLY GLN ARG LEU ARG GLN SEQRES 2 B 152 SER ILE GLN ASN TYR PHE SER SER PRO TRP LEU LEU TYR SEQRES 3 B 152 THR ALA LYS ALA GLU ALA LEU LEU ASP LEU ARG ASP ASP SEQRES 4 B 152 GLU ALA MET LEU ASN GLU MET GLU ALA VAL GLY GLU LEU SEQRES 5 B 152 PRO MET ALA LEU GLU TYR GLU SER LEU THR ASP VAL GLN SEQRES 6 B 152 THR GLN ILE VAL THR ALA ILE GLN ALA GLU LEU ALA HIS SEQRES 7 B 152 PHE ARG ASN THR ALA GLN PRO ILE ASN LEU GLY ALA VAL SEQRES 8 B 152 LEU GLN GLU GLN LEU ALA ARG TYR PRO GLN SER ARG HIS SEQRES 9 B 152 PHE ASP VAL ALA ARG ILE ILE VAL ASP GLN ALA VAL LYS SEQRES 10 B 152 LEU GLY MET ALA SER GLN ASP HIS GLN ALA VAL TYR PRO SEQRES 11 B 152 VAL TRP GLN PRO ILE ASP ASP PHE SER ALA ALA VAL GLN SEQRES 12 B 152 ALA HIS LEU ILE ASP GLN TYR ASP LYS HET AGS A2001 31 HET MG A2011 1 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 AGS C10 H16 N5 O12 P3 S FORMUL 4 MG MG 2+ FORMUL 5 HOH *30(H2 O) HELIX 1 1 GLY A 70 ILE A 83 1 14 HELIX 2 2 LEU A 108 LEU A 112 5 5 HELIX 3 3 SER A 162 PHE A 167 1 6 HELIX 4 4 SER A 179 PHE A 187 1 9 HELIX 5 5 SER A 199 LEU A 210 1 12 HELIX 6 6 SER A 219 TYR A 235 1 17 HELIX 7 7 SER A 239 SER A 245 1 7 HELIX 8 8 LEU A 246 TYR A 249 5 4 HELIX 9 9 ARG A 258 ASP A 263 1 6 HELIX 10 10 ALA A 1265 ASN A 1287 1 23 HELIX 11 11 GLN A 1288 GLN A 1291 5 4 HELIX 12 12 ARG A 1308 GLN A 1321 1 14 HELIX 13 13 SER A 1335 ILE A 1347 1 13 HELIX 14 14 GLY A 1362 LEU A 1366 5 5 HELIX 15 15 ASP A 1367 ASN A 1370 5 4 HELIX 16 16 GLU A 1389 LEU A 1393 5 5 HELIX 17 17 SER A 1394 SER A 1417 1 24 HELIX 18 18 GLN A 1435 LEU A 1439 5 5 HELIX 19 19 ASP A 1440 LEU A 1454 1 15 HELIX 20 20 GLN B 356 THR B 373 1 18 HELIX 21 21 ASN B 378 LEU B 387 1 10 HELIX 22 22 PRO B 391 SER B 393 5 3 HELIX 23 23 ARG B 394 LEU B 409 1 16 HELIX 24 24 SER B 413 ALA B 418 5 6 SHEET 1 A 5 PHE A 49 ASP A 55 0 SHEET 2 A 5 LYS A 37 TRP A 46 -1 N ASN A 45 O PHE A 50 SHEET 3 A 5 VAL A 116 VAL A 124 -1 O GLU A 122 N ARG A 39 SHEET 4 A 5 ARG A 130 GLN A 139 -1 O ILE A 131 N THR A 123 SHEET 5 A 5 VAL A 147 ASP A 148 -1 O ASP A 148 N GLN A 138 SHEET 1 B 6 PHE A 49 ASP A 55 0 SHEET 2 B 6 LYS A 37 TRP A 46 -1 N ASN A 45 O PHE A 50 SHEET 3 B 6 VAL A 116 VAL A 124 -1 O GLU A 122 N ARG A 39 SHEET 4 B 6 ARG A 130 GLN A 139 -1 O ILE A 131 N THR A 123 SHEET 5 B 6 PRO A 151 GLN A 155 -1 O LEU A 154 N ILE A 132 SHEET 6 B 6 LYS A 195 PRO A 196 -1 O LYS A 195 N SER A 153 SHEET 1 C 7 LEU A1430 LEU A1433 0 SHEET 2 C 7 GLN A1457 ALA A1462 1 O ALA A1461 N LEU A1433 SHEET 3 C 7 VAL A 60 SER A 64 1 N THR A 61 O LEU A1458 SHEET 4 C 7 THR A1472 LYS A1475 1 O TYR A1474 N SER A 64 SHEET 5 C 7 VAL A1490 LYS A1493 -1 O LEU A1492 N THR A1473 SHEET 6 C 7 ALA B 431 GLN B 434 -1 O ALA B 432 N LYS A1493 SHEET 7 C 7 GLN B 424 ILE B 426 -1 N ILE B 426 O ALA B 431 SHEET 1 D 2 THR A 168 VAL A 171 0 SHEET 2 D 2 LYS A 174 VAL A 177 -1 O ARG A 176 N GLU A 169 SHEET 1 E 3 VAL A1298 ILE A1307 0 SHEET 2 E 3 LEU A1372 ARG A1380 -1 O LEU A1379 N LYS A1299 SHEET 3 E 3 GLY A1384 ARG A1387 -1 O MET A1386 N THR A1378 SHEET 1 F 2 ARG A1478 LEU A1481 0 SHEET 2 F 2 GLN A1484 VAL A1487 -1 O TYR A1486 N LYS A1479 LINK OG SER A 72 MG MG A2011 1555 1555 2.88 LINK O2G AGS A2001 MG MG A2011 1555 1555 2.73 LINK O2A AGS A2001 MG MG A2011 1555 1555 2.74 LINK O1B AGS A2001 MG MG A2011 1555 1555 2.80 SITE 1 AC1 23 GLY A 66 ASN A 67 GLY A 68 ALA A 69 SITE 2 AC1 23 GLY A 70 LYS A 71 SER A 72 THR A 73 SITE 3 AC1 23 GLY A 107 GLY A 110 LYS A 111 GLN A1297 SITE 4 AC1 23 ARG A1380 SER A1391 ALA A1392 SER A1394 SITE 5 AC1 23 THR A1395 GLY A1396 GLU A1397 GLN A1435 SITE 6 AC1 23 ARG A1478 MG A2011 HOH A2018 SITE 1 AC2 2 SER A 72 AGS A2001 CRYST1 58.522 180.203 138.496 90.00 90.00 90.00 P 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007220 0.00000