HEADER HYDROLASE 07-MAY-09 3HDA TITLE PRTC METHIONINE MUTANTS: M226A_DESY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETED PROTEASE C; COMPND 3 CHAIN: P; COMPND 4 SYNONYM: PROC; COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UNCHARACTERIZED PEPTIDE; COMPND 10 CHAIN: Z; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA CHRYSANTHEMI; SOURCE 3 ORGANISM_TAXID: 556; SOURCE 4 GENE: PRTC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC18 DERIVATIVE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS MET-TURN, BETA ROLL, METALLOPROTEASE, METZINCIN, HYDROLASE, METAL- KEYWDS 2 BINDING, PROTEASE, SECRETED, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.OBERHOLZER,M.BUMANN,T.HEGE,S.RUSSO,U.BAUMANN REVDAT 6 13-OCT-21 3HDA 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3HDA 1 SOURCE REMARK REVDAT 4 01-NOV-17 3HDA 1 REMARK REVDAT 3 17-FEB-16 3HDA 1 REMARK VERSN REVDAT 2 29-SEP-09 3HDA 1 JRNL REVDAT 1 30-JUN-09 3HDA 0 JRNL AUTH A.E.OBERHOLZER,M.BUMANN,T.HEGE,S.RUSSO,U.BAUMANN JRNL TITL METZINCIN'S CANONICAL METHIONINE IS RESPONSIBLE FOR THE JRNL TITL 2 STRUCTURAL INTEGRITY OF THE ZINC-BINDING SITE JRNL REF BIOL.CHEM. V. 390 875 2009 JRNL REFN ISSN 1431-6730 JRNL PMID 19558324 JRNL DOI 10.1515/BC.2009.100 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.4_54 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5100 - 4.4260 1.00 4651 163 0.1720 0.1670 REMARK 3 2 4.4260 - 3.5150 1.00 4528 135 0.1530 0.1780 REMARK 3 3 3.5150 - 3.0720 1.00 4471 156 0.1700 0.1940 REMARK 3 4 3.0720 - 2.7910 0.99 4430 137 0.1880 0.2360 REMARK 3 5 2.7910 - 2.5910 1.00 4442 142 0.1900 0.2180 REMARK 3 6 2.5910 - 2.4390 1.00 4429 146 0.1890 0.2560 REMARK 3 7 2.4390 - 2.3170 1.00 4455 113 0.1910 0.2260 REMARK 3 8 2.3170 - 2.2160 1.00 4414 118 0.2270 0.2590 REMARK 3 9 2.2160 - 2.1310 1.00 4418 150 0.2190 0.2480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23400 REMARK 3 B22 (A**2) : 1.23400 REMARK 3 B33 (A**2) : -2.46800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3008 REMARK 3 ANGLE : 0.882 4086 REMARK 3 CHIRALITY : 0.059 429 REMARK 3 PLANARITY : 0.003 550 REMARK 3 DIHEDRAL : 17.345 999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: RESID 10:225 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1433 44.0164 48.6984 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.2932 REMARK 3 T33: 0.2145 T12: 0.0138 REMARK 3 T13: 0.0391 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.8050 L22: 0.8143 REMARK 3 L33: 0.9508 L12: 0.6451 REMARK 3 L13: -0.5061 L23: -0.2968 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: -0.1074 S13: 0.0384 REMARK 3 S21: 0.0371 S22: -0.0484 S23: 0.0077 REMARK 3 S31: -0.0683 S32: 0.0500 S33: -0.0249 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: RESID 226:400 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5837 52.0127 21.2727 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.2982 REMARK 3 T33: 0.2453 T12: -0.0037 REMARK 3 T13: 0.0063 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.3087 L22: 0.2740 REMARK 3 L33: 1.5004 L12: 0.2487 REMARK 3 L13: -0.6027 L23: -0.3605 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0533 S13: 0.0716 REMARK 3 S21: 0.0137 S22: 0.0267 S23: 0.1167 REMARK 3 S31: 0.0346 S32: -0.2348 S33: -0.0172 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: RESID 401:495 REMARK 3 ORIGIN FOR THE GROUP (A): 61.4751 64.7613 -1.6641 REMARK 3 T TENSOR REMARK 3 T11: 0.2537 T22: 0.3307 REMARK 3 T33: 0.2347 T12: -0.0153 REMARK 3 T13: -0.0251 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 1.2210 L22: 0.9403 REMARK 3 L33: 0.9198 L12: -0.0195 REMARK 3 L13: 0.3062 L23: -0.8853 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: 0.4099 S13: 0.1921 REMARK 3 S21: -0.1469 S22: 0.0583 S23: 0.0308 REMARK 3 S31: -0.0417 S32: -0.1237 S33: 0.0167 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.812 REMARK 200 MONOCHROMATOR : SI[111] REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41603 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7090 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1GO8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M NACL, 0.1 M PHOSPHATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.84033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.68067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.68067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.84033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH P 648 LIES ON A SPECIAL POSITION. REMARK 375 HOH P 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH P 680 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA P 18 REMARK 465 ASN P 19 REMARK 465 THR P 20 REMARK 465 SER P 21 REMARK 465 SER P 22 REMARK 465 ALA P 23 REMARK 465 TYR P 24 REMARK 465 ASN P 25 REMARK 465 SER P 26 REMARK 465 VAL P 27 REMARK 465 TYR P 28 REMARK 465 ASP P 29 REMARK 465 PHE P 30 REMARK 465 LEU P 31 REMARK 465 ARG P 32 REMARK 465 TYR P 33 REMARK 465 HIS P 34 REMARK 465 ASP P 35 REMARK 465 ARG P 36 REMARK 465 GLY P 37 REMARK 465 ASP P 38 REMARK 465 GLY P 39 REMARK 465 LEU P 40 REMARK 465 THR P 41 REMARK 465 VAL P 42 REMARK 465 ASN P 43 REMARK 465 GLY P 44 REMARK 465 LYS P 45 REMARK 465 THR P 46 REMARK 465 SER P 47 REMARK 465 TYR P 48 REMARK 465 SER P 49 REMARK 465 ILE P 50 REMARK 465 ASP P 51 REMARK 465 GLN P 52 REMARK 465 ALA P 53 REMARK 465 ALA P 54 REMARK 465 ALA P 55 REMARK 465 GLN P 56 REMARK 465 ILE P 57 REMARK 465 THR P 58 REMARK 465 ARG P 59 REMARK 465 GLU P 60 REMARK 465 GLU P 201 REMARK 465 TYR P 202 REMARK 465 ASN P 203 REMARK 465 ALA P 204 REMARK 465 GLY P 205 REMARK 465 GLU P 206 REMARK 465 GLY P 207 REMARK 465 ASP P 208 REMARK 465 PRO P 209 REMARK 465 SER P 210 REMARK 465 TYR P 211 REMARK 465 ASN P 212 REMARK 465 ASP P 213 REMARK 465 ALA P 214 REMARK 465 VAL P 215 REMARK 465 TYR P 216 REMARK 465 ALA P 217 REMARK 465 GLU P 218 REMARK 465 ASP P 219 REMARK 465 SER P 220 REMARK 465 TYR P 221 REMARK 465 GLN P 222 REMARK 465 PHE P 223 REMARK 465 SER P 224 REMARK 465 ILE P 225 REMARK 465 ALA P 226 REMARK 465 SER P 227 REMARK 465 TYR P 228 REMARK 465 TRP P 229 REMARK 465 GLY P 230 REMARK 465 GLU P 231 REMARK 465 ASN P 232 REMARK 465 GLU P 233 REMARK 465 THR P 234 REMARK 465 GLY P 235 REMARK 465 ALA P 236 REMARK 465 ASP P 237 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU P 189 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN P 355 -160.21 -125.27 REMARK 500 SER P 396 72.19 -155.77 REMARK 500 ALA P 400 62.34 -158.35 REMARK 500 ILE P 411 -52.19 -128.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 485 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH P 10 O REMARK 620 2 GLY P 382 O 80.7 REMARK 620 3 GLY P 384 O 168.4 109.6 REMARK 620 4 ASP P 386 OD2 93.6 77.3 83.7 REMARK 620 5 GLN P 408 OE1 93.0 90.1 92.5 164.7 REMARK 620 6 ASP P 412 OD1 85.0 163.2 84.0 95.0 99.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 480 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG P 265 O REMARK 620 2 GLY P 267 O 96.8 REMARK 620 3 SER P 269 OG 85.9 80.1 REMARK 620 4 ASP P 297 OD1 82.3 154.8 124.7 REMARK 620 5 ASP P 297 OD2 88.6 154.0 74.9 51.1 REMARK 620 6 GLY P 299 O 87.5 79.8 158.0 75.0 125.9 REMARK 620 7 ASP P 302 OD2 172.0 85.6 87.0 98.7 86.0 100.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 481 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 300 O REMARK 620 2 ASP P 302 OD1 83.6 REMARK 620 3 THR P 339 O 166.5 95.5 REMARK 620 4 GLU P 341 OE1 87.5 134.9 83.6 REMARK 620 5 GLU P 341 OE2 83.0 85.7 83.5 49.4 REMARK 620 6 HOH P 634 O 103.4 76.2 89.4 148.5 159.8 REMARK 620 7 HOH P 635 O 88.8 147.9 98.8 75.5 124.4 75.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 482 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 346 O REMARK 620 2 GLY P 348 O 99.0 REMARK 620 3 ASP P 350 OD2 82.5 82.8 REMARK 620 4 GLY P 363 O 81.5 173.7 91.1 REMARK 620 5 ALA P 365 O 80.7 84.0 156.6 102.2 REMARK 620 6 ASP P 368 OD1 166.9 77.0 84.6 101.1 111.0 REMARK 620 7 ASP P 368 OD2 141.9 111.3 122.7 70.8 80.2 49.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 483 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN P 355 O REMARK 620 2 ALA P 357 O 89.3 REMARK 620 3 ASN P 359 OD1 81.5 86.1 REMARK 620 4 GLY P 372 O 85.7 173.0 88.3 REMARK 620 5 ALA P 374 O 82.9 87.0 163.0 97.2 REMARK 620 6 ASP P 377 OD1 164.4 82.3 84.8 101.4 109.6 REMARK 620 7 ASP P 377 OD2 146.0 120.2 114.6 66.2 82.3 48.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 484 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 364 O REMARK 620 2 GLY P 366 O 107.1 REMARK 620 3 ASP P 368 OD2 79.7 82.7 REMARK 620 4 GLY P 381 O 81.6 169.6 93.5 REMARK 620 5 ALA P 383 O 82.6 77.3 148.0 110.1 REMARK 620 6 ASP P 386 OD1 155.9 84.5 81.0 85.4 121.0 REMARK 620 7 ASP P 386 OD2 137.7 108.9 126.3 65.7 84.2 50.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 487 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY P 373 O REMARK 620 2 GLY P 375 O 109.9 REMARK 620 3 ASP P 377 OD2 87.0 86.3 REMARK 620 4 ASP P 395 O 86.2 91.9 171.9 REMARK 620 5 ASP P 402 OD1 162.5 87.2 90.7 97.1 REMARK 620 6 HOH P 636 O 77.5 171.5 90.0 92.9 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HB2 RELATED DB: PDB REMARK 900 RELATED ID: 3HBU RELATED DB: PDB REMARK 900 RELATED ID: 3HBV RELATED DB: PDB REMARK 900 RELATED ID: 1GO7 RELATED DB: PDB REMARK 900 RELATED ID: 1GO8 RELATED DB: PDB REMARK 900 RELATED ID: 1K7G RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHOR STATES THAT THE ORIGIN OF THE PEPTIDE IS UNCLEAR. THE REMARK 999 SEQUENCE IS BASED ON THE SHAPE OF THE ELECTRON DENSITY MAP. DBREF 3HDA P 18 479 UNP P16317 PRTC_ERWCH 18 479 DBREF 3HDA Z 1 6 PDB 3HDA 3HDA 1 6 SEQADV 3HDA ALA P 226 UNP P16317 MET 226 ENGINEERED MUTATION SEQRES 1 P 462 ALA ASN THR SER SER ALA TYR ASN SER VAL TYR ASP PHE SEQRES 2 P 462 LEU ARG TYR HIS ASP ARG GLY ASP GLY LEU THR VAL ASN SEQRES 3 P 462 GLY LYS THR SER TYR SER ILE ASP GLN ALA ALA ALA GLN SEQRES 4 P 462 ILE THR ARG GLU ASN VAL SER TRP ASN GLY THR ASN VAL SEQRES 5 P 462 PHE GLY LYS SER ALA ASN LEU THR PHE LYS PHE LEU GLN SEQRES 6 P 462 SER VAL SER SER ILE PRO SER GLY ASP THR GLY PHE VAL SEQRES 7 P 462 LYS PHE ASN ALA GLU GLN ILE GLU GLN ALA LYS LEU SER SEQRES 8 P 462 LEU GLN SER TRP SER ASP VAL ALA ASN LEU THR PHE THR SEQRES 9 P 462 GLU VAL THR GLY ASN LYS SER ALA ASN ILE THR PHE GLY SEQRES 10 P 462 ASN TYR THR ARG ASP ALA SER GLY ASN LEU ASP TYR GLY SEQRES 11 P 462 THR GLN ALA TYR ALA TYR TYR PRO GLY ASN TYR GLN GLY SEQRES 12 P 462 ALA GLY SER SER TRP TYR ASN TYR ASN GLN SER ASN ILE SEQRES 13 P 462 ARG ASN PRO GLY SER GLU GLU TYR GLY ARG GLN THR PHE SEQRES 14 P 462 THR HIS GLU ILE GLY HIS ALA LEU GLY LEU ALA HIS PRO SEQRES 15 P 462 GLY GLU TYR ASN ALA GLY GLU GLY ASP PRO SER TYR ASN SEQRES 16 P 462 ASP ALA VAL TYR ALA GLU ASP SER TYR GLN PHE SER ILE SEQRES 17 P 462 ALA SER TYR TRP GLY GLU ASN GLU THR GLY ALA ASP TYR SEQRES 18 P 462 ASN GLY HIS TYR GLY GLY ALA PRO MET ILE ASP ASP ILE SEQRES 19 P 462 ALA ALA ILE GLN ARG LEU TYR GLY ALA ASN MET THR THR SEQRES 20 P 462 ARG THR GLY ASP SER VAL TYR GLY PHE ASN SER ASN THR SEQRES 21 P 462 ASP ARG ASP PHE TYR THR ALA THR ASP SER SER LYS ALA SEQRES 22 P 462 LEU ILE PHE SER VAL TRP ASP ALA GLY GLY THR ASP THR SEQRES 23 P 462 PHE ASP PHE SER GLY TYR SER ASN ASN GLN ARG ILE ASN SEQRES 24 P 462 LEU ASN GLU GLY SER PHE SER ASP VAL GLY GLY LEU LYS SEQRES 25 P 462 GLY ASN VAL SER ILE ALA HIS GLY VAL THR ILE GLU ASN SEQRES 26 P 462 ALA ILE GLY GLY SER GLY ASN ASP ILE LEU VAL GLY ASN SEQRES 27 P 462 SER ALA ASP ASN ILE LEU GLN GLY GLY ALA GLY ASN ASP SEQRES 28 P 462 VAL LEU TYR GLY GLY ALA GLY ALA ASP THR LEU TYR GLY SEQRES 29 P 462 GLY ALA GLY ARG ASP THR PHE VAL TYR GLY SER GLY GLN SEQRES 30 P 462 ASP SER THR VAL ALA ALA TYR ASP TRP ILE ALA ASP PHE SEQRES 31 P 462 GLN LYS GLY ILE ASP LYS ILE ASP LEU SER ALA PHE ARG SEQRES 32 P 462 ASN GLU GLY GLN LEU SER PHE VAL GLN ASP GLN PHE THR SEQRES 33 P 462 GLY LYS GLY GLN GLU VAL MET LEU GLN TRP ASP ALA ALA SEQRES 34 P 462 ASN SER ILE THR ASN LEU TRP LEU HIS GLU ALA GLY HIS SEQRES 35 P 462 SER SER VAL ASP PHE LEU VAL ARG ILE VAL GLY GLN ALA SEQRES 36 P 462 ALA GLN SER ASP ILE ILE VAL SEQRES 1 Z 6 ALA GLU ALA ALA GLN ALA HET CA P 480 1 HET CA P 481 1 HET CA P 482 1 HET CA P 483 1 HET CA P 484 1 HET CA P 485 1 HET CA P 487 1 HET CL P 1 1 HET CL P 3 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 3 CA 7(CA 2+) FORMUL 10 CL 2(CL 1-) FORMUL 12 HOH *227(H2 O) HELIX 1 1 ASN P 98 ASP P 114 1 17 HELIX 2 2 GLN P 170 ASN P 175 1 6 HELIX 3 3 GLU P 179 LEU P 194 1 16 HELIX 4 4 MET P 247 GLY P 259 1 13 HELIX 5 5 ARG P 279 PHE P 281 5 3 HELIX 6 6 SER P 392 SER P 396 5 5 HELIX 7 7 THR P 397 TYR P 401 5 5 HELIX 8 8 SER P 417 GLY P 423 5 7 HELIX 9 9 ALA P 473 SER P 475 5 3 SHEET 1 A 2 VAL P 62 SER P 63 0 SHEET 2 A 2 GLY P 66 THR P 67 -1 O GLY P 66 N SER P 63 SHEET 1 B 6 LEU P 118 GLU P 122 0 SHEET 2 B 6 ALA P 74 PHE P 80 1 N LEU P 76 O THR P 119 SHEET 3 B 6 ILE P 131 TYR P 136 1 O ILE P 131 N THR P 77 SHEET 4 B 6 SER P 163 ASN P 167 1 O TYR P 166 N TYR P 136 SHEET 5 B 6 ALA P 150 TYR P 153 -1 N TYR P 151 O TRP P 165 SHEET 6 B 6 GLU Z 2 GLN Z 5 -1 O GLN Z 5 N ALA P 150 SHEET 1 C11 THR P 283 ALA P 284 0 SHEET 2 C11 VAL P 270 PHE P 273 1 N GLY P 272 O ALA P 284 SHEET 3 C11 THR P 303 ASP P 305 1 O ASP P 305 N PHE P 273 SHEET 4 C11 ASN P 342 ILE P 344 1 O ILE P 344 N PHE P 304 SHEET 5 C11 ILE P 360 GLN P 362 1 O GLN P 362 N ALA P 343 SHEET 6 C11 THR P 378 TYR P 380 1 O TYR P 380 N LEU P 361 SHEET 7 C11 ASP P 402 ILE P 404 1 O TRP P 403 N LEU P 379 SHEET 8 C11 PHE P 464 VAL P 469 1 O ARG P 467 N ILE P 404 SHEET 9 C11 ILE P 449 HIS P 455 -1 N LEU P 452 O VAL P 466 SHEET 10 C11 GLU P 438 ASP P 444 -1 N ASP P 444 O ILE P 449 SHEET 11 C11 SER P 426 PHE P 427 1 N SER P 426 O VAL P 439 SHEET 1 D 3 PHE P 293 VAL P 295 0 SHEET 2 D 3 VAL P 332 ILE P 334 1 O SER P 333 N VAL P 295 SHEET 3 D 3 PHE P 322 SER P 323 -1 N SER P 323 O VAL P 332 SHEET 1 E 6 ARG P 314 ASN P 316 0 SHEET 2 E 6 ILE P 351 VAL P 353 1 O ILE P 351 N ILE P 315 SHEET 3 E 6 VAL P 369 TYR P 371 1 O VAL P 369 N LEU P 352 SHEET 4 E 6 THR P 387 VAL P 389 1 O VAL P 389 N LEU P 370 SHEET 5 E 6 LYS P 413 ASP P 415 1 O ASP P 415 N PHE P 388 SHEET 6 E 6 ILE P 477 ILE P 478 1 O ILE P 478 N ILE P 414 LINK O HOH P 10 CA CA P 485 1555 1555 2.62 LINK O ARG P 265 CA CA P 480 1555 1555 2.43 LINK O GLY P 267 CA CA P 480 1555 1555 2.47 LINK OG SER P 269 CA CA P 480 1555 1555 2.52 LINK OD1 ASP P 297 CA CA P 480 1555 1555 2.56 LINK OD2 ASP P 297 CA CA P 480 1555 1555 2.51 LINK O GLY P 299 CA CA P 480 1555 1555 2.36 LINK O GLY P 300 CA CA P 481 1555 1555 2.45 LINK OD2 ASP P 302 CA CA P 480 1555 1555 2.42 LINK OD1 ASP P 302 CA CA P 481 1555 1555 2.46 LINK O THR P 339 CA CA P 481 1555 1555 2.43 LINK OE1 GLU P 341 CA CA P 481 1555 1555 2.63 LINK OE2 GLU P 341 CA CA P 481 1555 1555 2.64 LINK O GLY P 346 CA CA P 482 1555 1555 2.50 LINK O GLY P 348 CA CA P 482 1555 1555 2.51 LINK OD2 ASP P 350 CA CA P 482 1555 1555 2.54 LINK O ASN P 355 CA CA P 483 1555 1555 2.39 LINK O ALA P 357 CA CA P 483 1555 1555 2.45 LINK OD1 ASN P 359 CA CA P 483 1555 1555 2.47 LINK O GLY P 363 CA CA P 482 1555 1555 2.45 LINK O GLY P 364 CA CA P 484 1555 1555 2.44 LINK O ALA P 365 CA CA P 482 1555 1555 2.48 LINK O GLY P 366 CA CA P 484 1555 1555 2.46 LINK OD1 ASP P 368 CA CA P 482 1555 1555 2.44 LINK OD2 ASP P 368 CA CA P 482 1555 1555 2.75 LINK OD2 ASP P 368 CA CA P 484 1555 1555 2.54 LINK O GLY P 372 CA CA P 483 1555 1555 2.45 LINK O GLY P 373 CA CA P 487 1555 1555 2.40 LINK O ALA P 374 CA CA P 483 1555 1555 2.44 LINK O GLY P 375 CA CA P 487 1555 1555 2.46 LINK OD1 ASP P 377 CA CA P 483 1555 1555 2.43 LINK OD2 ASP P 377 CA CA P 483 1555 1555 2.83 LINK OD2 ASP P 377 CA CA P 487 1555 1555 2.40 LINK O GLY P 381 CA CA P 484 1555 1555 2.43 LINK O GLY P 382 CA CA P 485 1555 1555 2.48 LINK O ALA P 383 CA CA P 484 1555 1555 2.49 LINK O GLY P 384 CA CA P 485 1555 1555 2.50 LINK OD1 ASP P 386 CA CA P 484 1555 1555 2.44 LINK OD2 ASP P 386 CA CA P 484 1555 1555 2.71 LINK OD2 ASP P 386 CA CA P 485 1555 1555 2.49 LINK O ASP P 395 CA CA P 487 1555 1555 2.38 LINK OD1 ASP P 402 CA CA P 487 1555 1555 2.53 LINK OE1 GLN P 408 CA CA P 485 1555 1555 2.44 LINK OD1 ASP P 412 CA CA P 485 1555 1555 2.52 LINK CA CA P 481 O HOH P 634 1555 1555 2.50 LINK CA CA P 481 O HOH P 635 1555 1555 2.61 LINK CA CA P 487 O HOH P 636 1555 1555 2.49 SITE 1 AC1 6 ARG P 265 GLY P 267 SER P 269 ASP P 297 SITE 2 AC1 6 GLY P 299 ASP P 302 SITE 1 AC2 6 GLY P 300 ASP P 302 THR P 339 GLU P 341 SITE 2 AC2 6 HOH P 634 HOH P 635 SITE 1 AC3 6 GLY P 346 GLY P 348 ASP P 350 GLY P 363 SITE 2 AC3 6 ALA P 365 ASP P 368 SITE 1 AC4 6 ASN P 355 ALA P 357 ASN P 359 GLY P 372 SITE 2 AC4 6 ALA P 374 ASP P 377 SITE 1 AC5 6 GLY P 364 GLY P 366 ASP P 368 GLY P 381 SITE 2 AC5 6 ALA P 383 ASP P 386 SITE 1 AC6 6 HOH P 10 GLY P 382 GLY P 384 ASP P 386 SITE 2 AC6 6 GLN P 408 ASP P 412 SITE 1 AC7 6 GLY P 373 GLY P 375 ASP P 377 ASP P 395 SITE 2 AC7 6 ASP P 402 HOH P 636 SITE 1 AC8 4 ARG P 265 GLY P 267 SER P 269 HOH P 659 SITE 1 AC9 4 GLN P 110 SER P 113 HOH P 508 HOH P 694 CRYST1 101.858 101.858 122.521 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009818 0.005668 0.000000 0.00000 SCALE2 0.000000 0.011336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008162 0.00000