HEADER IMMUNE SYSTEM 06-DEC-11 3UYP TITLE CRYSTAL STRUCTURE OF THE DENGUE VIRUS SEROTYPE 4 ENVELOPE PROTEIN TITLE 2 DOMAIN III IN COMPLEX WITH THE VARIABLE DOMAINS OF MAB 4E11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-DENGUE MAB 4E11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SINGLE CHAIN VARIABLE FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ENVELOPE PROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: DOMAIN III (UNP RESIDUES 296-400); COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HB2151; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PHAGEMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLB1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: DENGUE VIRUS 4; SOURCE 12 ORGANISM_TAXID: 11070; SOURCE 13 STRAIN: MYANMAR 1976; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET20B KEYWDS DENGUE ANTIBODY NEUTRALIZATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.J.B.COCKBURN,M.E.NAVARRO SANCHEZ,N.FRETES,A.URVOAS,I.STAROPOLI, AUTHOR 2 C.M.KIKUTI,L.L.COFFEY,F.ARENZANA SEISDEDOS,H.BEDOUELLE,F.A.REY REVDAT 4 20-NOV-24 3UYP 1 REMARK REVDAT 3 13-SEP-23 3UYP 1 REMARK SEQADV REVDAT 2 18-APR-12 3UYP 1 JRNL REVDAT 1 22-FEB-12 3UYP 0 JRNL AUTH J.J.COCKBURN,M.E.NAVARRO SANCHEZ,N.FRETES,A.URVOAS, JRNL AUTH 2 I.STAROPOLI,C.M.KIKUTI,L.L.COFFEY,F.ARENZANA SEISDEDOS, JRNL AUTH 3 H.BEDOUELLE,F.A.REY JRNL TITL MECHANISM OF DENGUE VIRUS BROAD CROSS-NEUTRALIZATION BY A JRNL TITL 2 MONOCLONAL ANTIBODY. JRNL REF STRUCTURE V. 20 303 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22285214 JRNL DOI 10.1016/J.STR.2012.01.001 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1611 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2872 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1832 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2718 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE : 0.1864 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.36 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 154 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2482 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.97200 REMARK 3 B22 (A**2) : 7.69240 REMARK 3 B33 (A**2) : -3.72040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.234 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.134 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2608 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3534 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 894 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 58 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 378 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2608 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 342 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3111 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.12 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|117 } REMARK 3 ORIGIN FOR THE GROUP (A): 46.5076 31.6308 -0.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: -0.0626 REMARK 3 T33: -0.0288 T12: 0.0084 REMARK 3 T13: 0.0274 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.9529 L22: 1.3201 REMARK 3 L33: 1.6026 L12: 0.4408 REMARK 3 L13: 0.6330 L23: 0.5681 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.0659 S13: 0.1501 REMARK 3 S21: -0.2327 S22: 0.0488 S23: 0.0264 REMARK 3 S31: -0.3921 S32: 0.0719 S33: 0.0252 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|135 - A|244 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.1844 11.2257 -4.3401 REMARK 3 T TENSOR REMARK 3 T11: -0.0394 T22: -0.0122 REMARK 3 T33: 0.0150 T12: 0.0155 REMARK 3 T13: 0.0125 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.9626 L22: 1.8844 REMARK 3 L33: 1.1567 L12: -0.1744 REMARK 3 L13: -0.0771 L23: 0.4815 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.0040 S13: -0.0457 REMARK 3 S21: -0.1115 S22: 0.0188 S23: 0.0767 REMARK 3 S31: -0.0504 S32: -0.0924 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|299 - B|394 } REMARK 3 ORIGIN FOR THE GROUP (A): 19.4462 28.0657 -11.7948 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: -0.0599 REMARK 3 T33: 0.0476 T12: 0.1350 REMARK 3 T13: -0.1424 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.2540 L22: 2.0741 REMARK 3 L33: 1.4685 L12: -1.2448 REMARK 3 L13: -0.1268 L23: 0.4116 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: 0.0342 S13: -0.0869 REMARK 3 S21: -0.4515 S22: -0.2360 S23: 0.5442 REMARK 3 S31: -0.0583 S32: -0.1977 S33: 0.1305 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 47.193 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2H0P, 3UZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULPHATE, 12.5% REMARK 280 GLYCEROL, 0.1M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.94000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.94000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.95500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.30000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.94000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.95500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.30000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.94000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 GLY A 128 REMARK 465 GLY A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLU A 133 REMARK 465 LEU A 134 REMARK 465 PRO A 245 REMARK 465 LEU A 246 REMARK 465 GLU A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 MET B 295 REMARK 465 GLY B 296 REMARK 465 MET B 297 REMARK 465 SER B 298 REMARK 465 GLY B 395 REMARK 465 SER B 396 REMARK 465 SER B 397 REMARK 465 ILE B 398 REMARK 465 GLY B 399 REMARK 465 LYS B 400 REMARK 465 LEU B 401 REMARK 465 GLU B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 61.69 36.07 REMARK 500 ALA A 187 -40.08 65.80 REMARK 500 ARG A 204 -106.79 60.58 REMARK 500 ALA A 220 -178.68 -177.67 REMARK 500 SER A 227 14.01 -146.30 REMARK 500 ASP B 341 -175.46 -68.15 REMARK 500 GLU B 345 -85.22 -106.05 REMARK 500 THR B 355 70.48 20.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UZE RELATED DB: PDB REMARK 900 RELATED ID: 3UZQ RELATED DB: PDB REMARK 900 RELATED ID: 3UZV RELATED DB: PDB DBREF 3UYP B 296 400 UNP Q9IZJ0 Q9IZJ0_9FLAV 296 400 DBREF 3UYP A 1 253 PDB 3UYP 3UYP 1 253 SEQADV 3UYP MET B 295 UNP Q9IZJ0 INITIATING METHIONINE SEQADV 3UYP LEU B 401 UNP Q9IZJ0 EXPRESSION TAG SEQADV 3UYP GLU B 402 UNP Q9IZJ0 EXPRESSION TAG SEQADV 3UYP HIS B 403 UNP Q9IZJ0 EXPRESSION TAG SEQADV 3UYP HIS B 404 UNP Q9IZJ0 EXPRESSION TAG SEQADV 3UYP HIS B 405 UNP Q9IZJ0 EXPRESSION TAG SEQADV 3UYP HIS B 406 UNP Q9IZJ0 EXPRESSION TAG SEQADV 3UYP HIS B 407 UNP Q9IZJ0 EXPRESSION TAG SEQADV 3UYP HIS B 408 UNP Q9IZJ0 EXPRESSION TAG SEQRES 1 A 253 GLU VAL LYS LEU LEU GLU GLN SER GLY ALA GLU LEU VAL SEQRES 2 A 253 LYS PRO GLY ALA SER VAL ARG LEU SER CYS THR ALA SER SEQRES 3 A 253 GLY PHE ASN ILE LYS ASP THR TYR MET SER TRP VAL LYS SEQRES 4 A 253 GLN ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE SEQRES 5 A 253 ASP PRO ALA ASN GLY ASP THR LYS TYR ASP PRO LYS PHE SEQRES 6 A 253 GLN GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN SEQRES 7 A 253 THR ALA TYR LEU HIS LEU SER SER LEU THR SER GLY ASP SEQRES 8 A 253 THR ALA VAL TYR TYR CYS SER ARG GLY TRP GLU GLY PHE SEQRES 9 A 253 ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA SEQRES 10 A 253 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 11 A 253 GLY SER GLU LEU VAL MET THR GLN THR PRO ALA SER LEU SEQRES 12 A 253 ALA VAL SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG SEQRES 13 A 253 ALA SER GLU ASN VAL ASP ARG TYR GLY ASN SER PHE MET SEQRES 14 A 253 HIS TRP TYR GLN GLN LYS ALA GLY GLN PRO PRO LYS LEU SEQRES 15 A 253 LEU ILE TYR ARG ALA SER ASN LEU GLU SER GLY ILE PRO SEQRES 16 A 253 ALA ARG PHE SER GLY SER GLY SER ARG THR ASP PHE THR SEQRES 17 A 253 LEU THR ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR SEQRES 18 A 253 TYR PHE CYS GLN ARG SER ASN GLU VAL PRO TRP THR PHE SEQRES 19 A 253 GLY GLY GLY THR LYS LEU GLU ILE LYS ARG PRO LEU GLU SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS SEQRES 1 B 114 MET GLY MET SER TYR THR MET CYS SER GLY LYS PHE SER SEQRES 2 B 114 ILE ASP LYS GLU MET ALA GLU THR GLN HIS GLY THR THR SEQRES 3 B 114 VAL VAL LYS VAL LYS TYR GLU GLY ALA GLY ALA PRO CYS SEQRES 4 B 114 LYS VAL PRO ILE GLU ILE ARG ASP VAL ASN LYS GLU LYS SEQRES 5 B 114 VAL VAL GLY ARG ILE ILE SER SER THR PRO PHE ALA GLU SEQRES 6 B 114 ASN THR ASN SER VAL THR ASN ILE GLU LEU GLU PRO PRO SEQRES 7 B 114 PHE GLY ASP SER TYR ILE VAL ILE GLY VAL GLY ASP SER SEQRES 8 B 114 ALA LEU THR LEU HIS TRP PHE ARG LYS GLY SER SER ILE SEQRES 9 B 114 GLY LYS LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A 254 6 HET GOL A 255 6 HET SO4 A 256 5 HET GOL A 257 6 HET GOL A 258 6 HET GOL A 259 6 HET GOL A 260 6 HET TRS B 1 8 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 GOL 6(C3 H8 O3) FORMUL 5 SO4 O4 S 2- FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 11 HOH *277(H2 O) HELIX 1 1 ASN A 29 THR A 33 5 5 HELIX 2 2 PRO A 63 GLN A 66 5 4 HELIX 3 3 THR A 88 THR A 92 5 5 HELIX 4 4 GLU A 215 VAL A 219 5 5 HELIX 5 5 VAL B 382 ALA B 386 5 5 SHEET 1 A 4 LEU A 5 GLN A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O THR A 24 N GLU A 6 SHEET 3 A 4 THR A 79 LEU A 84 -1 O LEU A 82 N LEU A 21 SHEET 4 A 4 ALA A 69 ASP A 74 -1 N THR A 72 O TYR A 81 SHEET 1 B 6 GLU A 11 VAL A 13 0 SHEET 2 B 6 THR A 111 VAL A 115 1 O LEU A 112 N GLU A 11 SHEET 3 B 6 ALA A 93 ARG A 99 -1 N ALA A 93 O VAL A 113 SHEET 4 B 6 MET A 35 GLN A 40 -1 N VAL A 38 O TYR A 96 SHEET 5 B 6 GLU A 47 ILE A 52 -1 O GLU A 47 N LYS A 39 SHEET 6 B 6 THR A 59 TYR A 61 -1 O LYS A 60 N ARG A 51 SHEET 1 C 4 GLU A 11 VAL A 13 0 SHEET 2 C 4 THR A 111 VAL A 115 1 O LEU A 112 N GLU A 11 SHEET 3 C 4 ALA A 93 ARG A 99 -1 N ALA A 93 O VAL A 113 SHEET 4 C 4 TYR A 106 TRP A 107 -1 O TYR A 106 N ARG A 99 SHEET 1 D 4 MET A 136 THR A 139 0 SHEET 2 D 4 ALA A 151 ALA A 157 -1 O ARG A 156 N THR A 137 SHEET 3 D 4 ASP A 206 ILE A 211 -1 O PHE A 207 N CYS A 155 SHEET 4 D 4 PHE A 198 SER A 203 -1 N SER A 199 O THR A 210 SHEET 1 E 6 SER A 142 VAL A 145 0 SHEET 2 E 6 THR A 238 ILE A 242 1 O GLU A 241 N LEU A 143 SHEET 3 E 6 ALA A 220 ARG A 226 -1 N ALA A 220 O LEU A 240 SHEET 4 E 6 MET A 169 GLN A 174 -1 N HIS A 170 O GLN A 225 SHEET 5 E 6 LYS A 181 TYR A 185 -1 O LEU A 183 N TRP A 171 SHEET 6 E 6 ASN A 189 LEU A 190 -1 O ASN A 189 N TYR A 185 SHEET 1 F 2 ASP A 162 ARG A 163 0 SHEET 2 F 2 ASN A 166 SER A 167 -1 O ASN A 166 N ARG A 163 SHEET 1 G 3 PHE B 306 ILE B 308 0 SHEET 2 G 3 THR B 320 TYR B 326 -1 O LYS B 325 N SER B 307 SHEET 3 G 3 ALA B 313 GLU B 314 -1 N ALA B 313 O VAL B 321 SHEET 1 H 4 PHE B 306 ILE B 308 0 SHEET 2 H 4 THR B 320 TYR B 326 -1 O LYS B 325 N SER B 307 SHEET 3 H 4 THR B 365 GLU B 370 -1 O ILE B 367 N VAL B 322 SHEET 4 H 4 ARG B 350 ILE B 351 -1 N ARG B 350 O GLU B 370 SHEET 1 I 2 CYS B 333 LYS B 334 0 SHEET 2 I 2 PHE B 357 ALA B 358 -1 O ALA B 358 N CYS B 333 SHEET 1 J 4 VAL B 347 VAL B 348 0 SHEET 2 J 4 ILE B 337 ARG B 340 -1 N ILE B 339 O VAL B 348 SHEET 3 J 4 GLY B 374 ILE B 380 -1 O VAL B 379 N GLU B 338 SHEET 4 J 4 LEU B 387 ARG B 393 -1 O LEU B 387 N ILE B 380 SSBOND 1 CYS A 23 CYS A 97 1555 1555 2.04 SSBOND 2 CYS A 155 CYS A 224 1555 1555 2.06 SSBOND 3 CYS B 302 CYS B 333 1555 1555 2.04 CISPEP 1 THR A 139 PRO A 140 0 -1.77 CISPEP 2 ASN A 212 PRO A 213 0 -3.05 CISPEP 3 VAL A 230 PRO A 231 0 0.94 CISPEP 4 ALA B 331 PRO B 332 0 0.99 SITE 1 AC1 2 ARG A 163 TYR A 164 SITE 1 AC2 6 GLN A 40 GLU A 43 GLN A 174 GLY A 177 SITE 2 AC2 6 GLN A 178 HOH A 333 SITE 1 AC3 2 LYS A 60 SER B 354 SITE 1 AC4 8 GLN A 173 LYS A 181 PRO A 195 ARG A 197 SITE 2 AC4 8 PHE A 198 ASP A 217 ASP A 218 HOH A 292 SITE 1 AC5 6 ASN A 56 HOH A 267 HOH A 380 TYR B 299 SITE 2 AC5 6 PHE B 357 GLU B 359 SITE 1 AC6 5 LYS A 39 LYS A 64 PHE A 65 LYS A 68 SITE 2 AC6 5 THR A 88 SITE 1 AC7 5 ARG A 150 ARG A 156 ASN A 212 HOH A 295 SITE 2 AC7 5 HOH A 339 SITE 1 AC8 3 THR B 300 MET B 301 LYS B 334 CRYST1 106.600 155.880 55.910 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009381 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017886 0.00000