HEADER HYDROLASE/DE NOVO PROTEIN 18-DEC-13 4CJ2 TITLE CRYSTAL STRUCTURE OF HEWL IN COMPLEX WITH AFFITIN H4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSOZYME, GAL D 4,1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN COMPND 5 GAL D IV; COMPND 6 EC: 3.2.1.17; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AFFITIN H4; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: EGG WHITE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS; SOURCE 8 ORGANISM_TAXID: 2285; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE-DE NOVO PROTEIN COMPLEX, GLYCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CORREA,S.PACHECO,A.E.MECHALY,G.OBAL,G.BEHAR,B.MOURATOU,P.OPPEZZO, AUTHOR 2 P.M.ALZARI,F.PECORARI REVDAT 4 20-DEC-23 4CJ2 1 REMARK REVDAT 3 16-MAY-18 4CJ2 1 REMARK REVDAT 2 28-MAY-14 4CJ2 1 JRNL REVDAT 1 21-MAY-14 4CJ2 0 JRNL AUTH A.CORREA,S.PACHECO,A.E.MECHALY,G.OBAL,G.BEHAR,B.MOURATOU, JRNL AUTH 2 P.OPPEZZO,P.M.ALZARI,F.PECORARI JRNL TITL POTENT AND SPECIFIC INHIBITION OF GLYCOSIDASES BY SMALL JRNL TITL 2 ARTIFICIAL BINDING PROTEINS (AFFITINS) JRNL REF PLOS ONE V. 9 97438 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24823716 JRNL DOI 10.1371/JOURNAL.PONE.0097438 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 59169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3076 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2902 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4148 ; 1.884 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6616 ; 1.539 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;32.595 ;23.557 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;12.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;13.102 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3526 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 766 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5978 ; 7.731 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 118 ;36.097 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6155 ;17.840 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 129 B 1 129 7401 0.09 0.05 REMARK 3 2 C 2 63 D 2 63 3483 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2418 -15.2790 25.5979 REMARK 3 T TENSOR REMARK 3 T11: 0.0009 T22: 0.0043 REMARK 3 T33: 0.0063 T12: -0.0002 REMARK 3 T13: 0.0006 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0081 L22: 0.0018 REMARK 3 L33: 0.0052 L12: -0.0018 REMARK 3 L13: -0.0033 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0004 S13: -0.0008 REMARK 3 S21: 0.0005 S22: 0.0000 S23: -0.0002 REMARK 3 S31: 0.0002 S32: -0.0001 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0797 8.8795 16.9839 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: 0.0051 REMARK 3 T33: 0.0065 T12: 0.0002 REMARK 3 T13: 0.0010 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: 0.0075 REMARK 3 L33: 0.0201 L12: -0.0057 REMARK 3 L13: -0.0062 L23: 0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0011 S13: 0.0006 REMARK 3 S21: -0.0018 S22: -0.0008 S23: -0.0008 REMARK 3 S31: -0.0046 S32: -0.0027 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 63 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2433 0.7538 -1.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0035 REMARK 3 T33: 0.0067 T12: 0.0001 REMARK 3 T13: 0.0005 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0263 L22: 0.0377 REMARK 3 L33: 0.1397 L12: 0.0132 REMARK 3 L13: -0.0362 L23: -0.0318 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.0008 S13: -0.0013 REMARK 3 S21: 0.0016 S22: -0.0007 S23: -0.0028 REMARK 3 S31: 0.0065 S32: -0.0020 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 63 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1497 -20.5858 43.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: 0.0044 REMARK 3 T33: 0.0066 T12: -0.0002 REMARK 3 T13: 0.0009 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.0412 REMARK 3 L33: 0.1012 L12: -0.0141 REMARK 3 L13: -0.0050 L23: 0.0144 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0005 S13: -0.0003 REMARK 3 S21: -0.0005 S22: 0.0001 S23: 0.0001 REMARK 3 S31: -0.0001 S32: 0.0027 S33: -0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4CJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1290059246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62347 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GWD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.40650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ARG A -16 REMARK 465 SER A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 ILE A -12 REMARK 465 LEU A -11 REMARK 465 VAL A -10 REMARK 465 LEU A -9 REMARK 465 CYS A -8 REMARK 465 PHE A -7 REMARK 465 LEU A -6 REMARK 465 PRO A -5 REMARK 465 LEU A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 465 MET B -17 REMARK 465 ARG B -16 REMARK 465 SER B -15 REMARK 465 LEU B -14 REMARK 465 LEU B -13 REMARK 465 ILE B -12 REMARK 465 LEU B -11 REMARK 465 VAL B -10 REMARK 465 LEU B -9 REMARK 465 CYS B -8 REMARK 465 PHE B -7 REMARK 465 LEU B -6 REMARK 465 PRO B -5 REMARK 465 LEU B -4 REMARK 465 ALA B -3 REMARK 465 ALA B -2 REMARK 465 LEU B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 102 REMARK 465 MET C -10 REMARK 465 ARG C -9 REMARK 465 GLY C -8 REMARK 465 SER C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 465 GLU C 64 REMARK 465 LYS C 65 REMARK 465 LYS C 66 REMARK 465 LEU C 67 REMARK 465 MET D -10 REMARK 465 ARG D -9 REMARK 465 GLY D -8 REMARK 465 SER D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 GLY D 0 REMARK 465 SER D 1 REMARK 465 GLU D 64 REMARK 465 LYS D 65 REMARK 465 LYS D 66 REMARK 465 LEU D 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 101 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 3 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 LEU C 31 CB - CG - CD1 ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU D 31 CB - CG - CD1 ANGL. DEV. = 18.1 DEGREES REMARK 500 ASP D 35 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 36 68.16 -117.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 102 ASN A 103 135.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1130 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CELD IN COMPLEX WITH AFFITIN E12 REMARK 900 RELATED ID: 4CJ1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CELD IN COMPLEX WITH AFFITIN H3 DBREF 4CJ2 A -17 129 UNP P00698 LYSC_CHICK 1 147 DBREF 4CJ2 B -17 129 UNP P00698 LYSC_CHICK 1 147 DBREF 4CJ2 C -10 67 PDB 4CJ2 4CJ2 -10 67 DBREF 4CJ2 D -10 67 PDB 4CJ2 4CJ2 -10 67 SEQRES 1 A 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 A 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 A 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 A 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 A 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 A 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 A 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 A 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 A 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 A 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 A 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 A 147 GLY CYS ARG LEU SEQRES 1 B 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 B 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 B 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 B 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 B 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 B 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 B 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 B 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 B 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 B 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 B 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 B 147 GLY CYS ARG LEU SEQRES 1 C 78 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 C 78 LYS VAL LYS PHE PHE TRP ASN GLY GLU GLU LYS GLU VAL SEQRES 3 C 78 ASP THR SER LYS ILE VAL TRP VAL LYS ARG ALA GLY LYS SEQRES 4 C 78 SER VAL LEU PHE ILE TYR ASP ASP ASN GLY LYS ASN GLY SEQRES 5 C 78 TYR GLY ASP VAL THR GLU LYS ASP ALA PRO LYS GLU LEU SEQRES 6 C 78 LEU ASP MET LEU ALA ARG ALA GLU ARG GLU LYS LYS LEU SEQRES 1 D 78 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 D 78 LYS VAL LYS PHE PHE TRP ASN GLY GLU GLU LYS GLU VAL SEQRES 3 D 78 ASP THR SER LYS ILE VAL TRP VAL LYS ARG ALA GLY LYS SEQRES 4 D 78 SER VAL LEU PHE ILE TYR ASP ASP ASN GLY LYS ASN GLY SEQRES 5 D 78 TYR GLY ASP VAL THR GLU LYS ASP ALA PRO LYS GLU LEU SEQRES 6 D 78 LEU ASP MET LEU ALA ARG ALA GLU ARG GLU LYS LYS LEU HET GOL A1130 6 HET GOL B1130 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *358(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 SER A 24 ASN A 37 1 14 HELIX 3 3 CYS A 80 SER A 85 5 6 HELIX 4 4 ILE A 88 GLY A 102 1 15 HELIX 5 5 ASN A 103 ALA A 107 5 5 HELIX 6 6 TRP A 108 CYS A 115 1 8 HELIX 7 7 ASP A 119 ILE A 124 5 6 HELIX 8 8 GLY B 4 HIS B 15 1 12 HELIX 9 9 SER B 24 ASN B 37 1 14 HELIX 10 10 CYS B 80 SER B 85 5 6 HELIX 11 11 ILE B 88 SER B 100 1 13 HELIX 12 12 GLY B 104 ALA B 107 5 4 HELIX 13 13 TRP B 108 CYS B 115 1 8 HELIX 14 14 ASP B 119 ARG B 125 5 7 HELIX 15 15 PRO C 51 GLU C 62 1 12 HELIX 16 16 LYS D 48 ALA D 50 5 3 HELIX 17 17 PRO D 51 ARG D 63 1 13 SHEET 1 AA 3 THR A 43 ARG A 45 0 SHEET 2 AA 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SHEET 1 BA 3 THR B 43 ARG B 45 0 SHEET 2 BA 3 THR B 51 TYR B 53 -1 O ASP B 52 N ASN B 44 SHEET 3 BA 3 ILE B 58 ASN B 59 -1 O ILE B 58 N TYR B 53 SHEET 1 CA 2 LYS C 3 TRP C 8 0 SHEET 2 CA 2 GLU C 11 ASP C 16 -1 O GLU C 11 N TRP C 8 SHEET 1 CB 3 ILE C 20 ALA C 26 0 SHEET 2 CB 3 SER C 29 ASP C 36 -1 O SER C 29 N ALA C 26 SHEET 3 CB 3 LYS C 39 THR C 46 -1 O LYS C 39 N ASP C 36 SHEET 1 DA 2 LYS D 3 TRP D 8 0 SHEET 2 DA 2 GLU D 11 ASP D 16 -1 O GLU D 11 N TRP D 8 SHEET 1 DB 3 ILE D 20 ALA D 26 0 SHEET 2 DB 3 SER D 29 ASP D 35 -1 O SER D 29 N ALA D 26 SHEET 3 DB 3 ASN D 40 THR D 46 -1 O GLY D 41 N TYR D 34 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.16 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.30 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.04 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.15 SSBOND 5 CYS B 6 CYS B 127 1555 1555 2.12 SSBOND 6 CYS B 30 CYS B 115 1555 1555 2.24 SSBOND 7 CYS B 64 CYS B 80 1555 1555 2.10 SSBOND 8 CYS B 76 CYS B 94 1555 1555 2.12 SITE 1 AC1 8 GLN A 57 ILE A 58 ASN A 59 TRP A 63 SITE 2 AC1 8 ALA A 107 TRP A 108 HOH A2062 TYR D 42 SITE 1 AC2 10 LEU B 56 GLN B 57 ILE B 58 ASN B 59 SITE 2 AC2 10 ALA B 107 TRP B 108 HOH B2045 HOH B2075 SITE 3 AC2 10 ILE C 33 ASN C 40 CRYST1 37.889 62.813 87.099 90.00 98.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026393 0.000000 0.004062 0.00000 SCALE2 0.000000 0.015920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011616 0.00000