HEADER TRANSFERASE 18-SEP-12 4H51 TITLE CRYSTAL STRUCTURE OF A PUTATIVE ASPARTATE AMINOTRANSFERASE FROM TITLE 2 LEISHMANIA MAJOR FRIEDLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE ASPARTATE AMINOTRANSFERASE; COMPND 5 EC: 2.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 347515; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 GENE: ASAT, LMJF_24_0370, LMJF_35_0820; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, LEISHMANIA MAJOR, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, ASPARTATE AMINOTRANSFERASE, KEYWDS 3 TRANSFERASE, PYRIDOXAL PHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-MAY-15 4H51 1 JRNL REVDAT 2 06-MAY-15 4H51 1 JRNL REVDAT 1 10-OCT-12 4H51 0 JRNL AUTH J.ABENDROTH,R.CHOI,A.WALL,M.C.CLIFTON,C.M.LUKACS,B.L.STAKER, JRNL AUTH 2 W.VAN VOORHIS,P.MYLER,D.D.LORIMER,T.E.EDWARDS JRNL TITL STRUCTURES OF ASPARTATE AMINOTRANSFERASES FROM TRYPANOSOMA JRNL TITL 2 BRUCEI, LEISHMANIA MAJOR AND GIARDIA LAMBLIA. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 71 566 2015 JRNL REF 2 BIOL COMMUN JRNL REFN ISSN 1744-3091 JRNL PMID 25945710 JRNL DOI 10.1107/S2053230X15001831 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 68814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4697 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 757 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6442 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4242 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8782 ; 1.597 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10347 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 824 ; 6.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;31.077 ;23.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1031 ;12.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;16.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 987 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7263 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1328 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 407 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 38.4010 10.3590 60.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.0237 REMARK 3 T33: 0.0341 T12: -0.0056 REMARK 3 T13: 0.0119 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.4333 L22: 0.5094 REMARK 3 L33: 0.3212 L12: -0.2438 REMARK 3 L13: -0.0038 L23: 0.0947 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: -0.0389 S13: 0.0257 REMARK 3 S21: 0.0422 S22: -0.0035 S23: 0.0460 REMARK 3 S31: -0.0228 S32: -0.0567 S33: 0.0358 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 409 REMARK 3 RESIDUE RANGE : B 500 B 500 REMARK 3 ORIGIN FOR THE GROUP (A): 59.3710 -14.9540 49.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.0184 T22: 0.0336 REMARK 3 T33: 0.0244 T12: -0.0105 REMARK 3 T13: 0.0109 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.5208 L22: 0.8638 REMARK 3 L33: 0.3731 L12: -0.0296 REMARK 3 L13: -0.1566 L23: -0.0802 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0242 S13: -0.0628 REMARK 3 S21: -0.0354 S22: -0.0720 S23: -0.0702 REMARK 3 S31: -0.0135 S32: 0.0491 S33: 0.0429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4H51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB075027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : RIGAKU VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALDBIO PACT SCREEN E12: 20% PEG REMARK 280 3350, 200MM NAMALONATE PH 7.0, LEMAA.01471.B.B1.PS00838 AT 19MG/ REMARK 280 ML WITH 2.5MM PLP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.83500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ASN A 95 REMARK 465 THR A 96 REMARK 465 VAL A 97 REMARK 465 ASN A 408 REMARK 465 VAL A 409 REMARK 465 ASN A 410 REMARK 465 ARG A 411 REMARK 465 GLU A 412 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 ASN B 410 REMARK 465 ARG B 411 REMARK 465 GLU B 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 LEU A 99 CG CD1 CD2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 ASN A 101 CG OD1 ND2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 95 CG OD1 ND2 REMARK 470 VAL B 97 CG1 CG2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 ASN B 101 CG OD1 ND2 REMARK 470 ARG B 244 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 GLN B 344 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 73 OE2 GLU B 63 2.02 REMARK 500 OE2 GLU A 63 OH TYR B 73 2.04 REMARK 500 O HOH B 818 O HOH B 932 2.18 REMARK 500 O HOH B 627 O HOH B 753 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 216 CG HIS B 216 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 330 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 330 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 -75.13 -83.27 REMARK 500 SER A 109 -161.56 62.88 REMARK 500 TYR A 159 -63.16 -146.69 REMARK 500 LEU A 261 33.21 -97.52 REMARK 500 THR A 295 -59.76 74.86 REMARK 500 VAL B 42 -77.30 -82.78 REMARK 500 SER B 109 -161.73 61.59 REMARK 500 THR B 129 -48.13 -131.41 REMARK 500 TYR B 159 -71.24 -149.50 REMARK 500 SER B 222 78.52 -116.47 REMARK 500 LEU B 261 36.22 -92.41 REMARK 500 TYR B 294 10.50 -146.20 REMARK 500 THR B 295 -61.57 70.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 947 DISTANCE = 5.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEMAA.01471.B RELATED DB: TARGETTRACK DBREF 4H51 A 1 412 UNP Q4FX34 Q4FX34_LEIMA 1 412 DBREF 4H51 B 1 412 UNP Q4FX34 Q4FX34_LEIMA 1 412 SEQADV 4H51 MET A -7 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 ALA A -6 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS A -5 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS A -4 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS A -3 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS A -2 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS A -1 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS A 0 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 MET B -7 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 ALA B -6 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS B -5 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS B -4 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS B -3 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS B -2 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS B -1 UNP Q4FX34 EXPRESSION TAG SEQADV 4H51 HIS B 0 UNP Q4FX34 EXPRESSION TAG SEQRES 1 A 420 MET ALA HIS HIS HIS HIS HIS HIS MET SER THR GLN ALA SEQRES 2 A 420 ALA MET THR THR ALA GLU ARG TRP GLN LYS ILE GLN ALA SEQRES 3 A 420 GLN ALA PRO ASP VAL ILE PHE ASP LEU ALA LYS ARG ALA SEQRES 4 A 420 ALA ALA ALA LYS GLY PRO LYS ALA ASN LEU VAL ILE GLY SEQRES 5 A 420 ALA TYR ARG ASP GLU GLN GLY ARG PRO TYR PRO LEU ARG SEQRES 6 A 420 VAL VAL ARG LYS ALA GLU GLN LEU LEU LEU ASP MET ASN SEQRES 7 A 420 LEU ASP TYR GLU TYR LEU PRO ILE SER GLY TYR GLN PRO SEQRES 8 A 420 PHE ILE ASP GLU ALA VAL LYS ILE ILE TYR GLY ASN THR SEQRES 9 A 420 VAL GLU LEU GLU ASN LEU VAL ALA VAL GLN THR LEU SER SEQRES 10 A 420 GLY THR GLY ALA VAL SER LEU GLY ALA LYS LEU LEU THR SEQRES 11 A 420 ARG VAL PHE ASP ALA GLU THR THR PRO ILE TYR LEU SER SEQRES 12 A 420 ASP PRO THR TRP PRO ASN HIS TYR GLY VAL VAL LYS ALA SEQRES 13 A 420 ALA GLY TRP LYS ASN ILE CYS THR TYR ALA TYR TYR ASP SEQRES 14 A 420 PRO LYS THR VAL SER LEU ASN PHE GLU GLY MET LYS LYS SEQRES 15 A 420 ASP ILE LEU ALA ALA PRO ASP GLY SER VAL PHE ILE LEU SEQRES 16 A 420 HIS GLN CYS ALA HIS ASN PRO THR GLY VAL ASP PRO SER SEQRES 17 A 420 GLN GLU GLN TRP ASN GLU ILE ALA SER LEU MET LEU ALA SEQRES 18 A 420 LYS HIS HIS GLN VAL PHE PHE ASP SER ALA TYR GLN GLY SEQRES 19 A 420 TYR ALA SER GLY SER LEU ASP THR ASP ALA TYR ALA ALA SEQRES 20 A 420 ARG LEU PHE ALA ARG ARG GLY ILE GLU VAL LEU LEU ALA SEQRES 21 A 420 GLN SER PHE SER LLP ASN MET GLY LEU TYR SER GLU ARG SEQRES 22 A 420 ALA GLY THR LEU SER LEU LEU LEU LYS ASP LYS THR LYS SEQRES 23 A 420 ARG ALA ASP VAL LYS SER VAL MET ASP SER LEU ILE ARG SEQRES 24 A 420 GLU GLU TYR THR CYS PRO PRO ALA HIS GLY ALA ARG LEU SEQRES 25 A 420 ALA HIS LEU ILE LEU SER ASN ASN GLU LEU ARG LYS GLU SEQRES 26 A 420 TRP GLU ALA GLU LEU SER ALA MET ALA GLU ARG ILE ARG SEQRES 27 A 420 THR MET ARG ARG THR VAL TYR ASP GLU LEU LEU ARG LEU SEQRES 28 A 420 GLN THR PRO GLY SER TRP GLU HIS VAL ILE ASN GLN ILE SEQRES 29 A 420 GLY MET PHE SER PHE LEU GLY LEU SER LYS ALA GLN CYS SEQRES 30 A 420 GLU TYR CYS GLN ASN HIS ASN ILE PHE ILE THR VAL SER SEQRES 31 A 420 GLY ARG ALA ASN MET ALA GLY LEU THR HIS GLU THR ALA SEQRES 32 A 420 LEU MET LEU ALA GLN THR ILE ASN ASP ALA VAL ARG ASN SEQRES 33 A 420 VAL ASN ARG GLU SEQRES 1 B 420 MET ALA HIS HIS HIS HIS HIS HIS MET SER THR GLN ALA SEQRES 2 B 420 ALA MET THR THR ALA GLU ARG TRP GLN LYS ILE GLN ALA SEQRES 3 B 420 GLN ALA PRO ASP VAL ILE PHE ASP LEU ALA LYS ARG ALA SEQRES 4 B 420 ALA ALA ALA LYS GLY PRO LYS ALA ASN LEU VAL ILE GLY SEQRES 5 B 420 ALA TYR ARG ASP GLU GLN GLY ARG PRO TYR PRO LEU ARG SEQRES 6 B 420 VAL VAL ARG LYS ALA GLU GLN LEU LEU LEU ASP MET ASN SEQRES 7 B 420 LEU ASP TYR GLU TYR LEU PRO ILE SER GLY TYR GLN PRO SEQRES 8 B 420 PHE ILE ASP GLU ALA VAL LYS ILE ILE TYR GLY ASN THR SEQRES 9 B 420 VAL GLU LEU GLU ASN LEU VAL ALA VAL GLN THR LEU SER SEQRES 10 B 420 GLY THR GLY ALA VAL SER LEU GLY ALA LYS LEU LEU THR SEQRES 11 B 420 ARG VAL PHE ASP ALA GLU THR THR PRO ILE TYR LEU SER SEQRES 12 B 420 ASP PRO THR TRP PRO ASN HIS TYR GLY VAL VAL LYS ALA SEQRES 13 B 420 ALA GLY TRP LYS ASN ILE CYS THR TYR ALA TYR TYR ASP SEQRES 14 B 420 PRO LYS THR VAL SER LEU ASN PHE GLU GLY MET LYS LYS SEQRES 15 B 420 ASP ILE LEU ALA ALA PRO ASP GLY SER VAL PHE ILE LEU SEQRES 16 B 420 HIS GLN CYS ALA HIS ASN PRO THR GLY VAL ASP PRO SER SEQRES 17 B 420 GLN GLU GLN TRP ASN GLU ILE ALA SER LEU MET LEU ALA SEQRES 18 B 420 LYS HIS HIS GLN VAL PHE PHE ASP SER ALA TYR GLN GLY SEQRES 19 B 420 TYR ALA SER GLY SER LEU ASP THR ASP ALA TYR ALA ALA SEQRES 20 B 420 ARG LEU PHE ALA ARG ARG GLY ILE GLU VAL LEU LEU ALA SEQRES 21 B 420 GLN SER PHE SER LLP ASN MET GLY LEU TYR SER GLU ARG SEQRES 22 B 420 ALA GLY THR LEU SER LEU LEU LEU LYS ASP LYS THR LYS SEQRES 23 B 420 ARG ALA ASP VAL LYS SER VAL MET ASP SER LEU ILE ARG SEQRES 24 B 420 GLU GLU TYR THR CYS PRO PRO ALA HIS GLY ALA ARG LEU SEQRES 25 B 420 ALA HIS LEU ILE LEU SER ASN ASN GLU LEU ARG LYS GLU SEQRES 26 B 420 TRP GLU ALA GLU LEU SER ALA MET ALA GLU ARG ILE ARG SEQRES 27 B 420 THR MET ARG ARG THR VAL TYR ASP GLU LEU LEU ARG LEU SEQRES 28 B 420 GLN THR PRO GLY SER TRP GLU HIS VAL ILE ASN GLN ILE SEQRES 29 B 420 GLY MET PHE SER PHE LEU GLY LEU SER LYS ALA GLN CYS SEQRES 30 B 420 GLU TYR CYS GLN ASN HIS ASN ILE PHE ILE THR VAL SER SEQRES 31 B 420 GLY ARG ALA ASN MET ALA GLY LEU THR HIS GLU THR ALA SEQRES 32 B 420 LEU MET LEU ALA GLN THR ILE ASN ASP ALA VAL ARG ASN SEQRES 33 B 420 VAL ASN ARG GLU MODRES 4H51 LLP A 257 LYS MODRES 4H51 LLP B 257 LYS HET LLP A 257 24 HET LLP B 257 24 HET EDO A 500 4 HET EDO B 500 4 HETNAM LLP 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL- HETNAM 2 LLP PYRIDIN-4-YLMETHANE) HETNAM EDO 1,2-ETHANEDIOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 LLP 2(C14 H24 N3 O7 P) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *757(H2 O) HELIX 1 1 THR A 8 LYS A 15 1 8 HELIX 2 2 ASP A 22 ALA A 34 1 13 HELIX 3 3 LEU A 56 MET A 69 1 14 HELIX 4 4 TYR A 81 GLY A 94 1 14 HELIX 5 5 GLU A 98 GLU A 100 5 3 HELIX 6 6 SER A 109 THR A 122 1 14 HELIX 7 7 PRO A 140 ALA A 149 1 10 HELIX 8 8 PRO A 162 VAL A 165 5 4 HELIX 9 9 ASN A 168 ALA A 179 1 12 HELIX 10 10 SER A 200 HIS A 215 1 16 HELIX 11 11 SER A 231 ALA A 236 1 6 HELIX 12 12 ALA A 236 ARG A 245 1 10 HELIX 13 13 LEU A 261 GLU A 264 5 4 HELIX 14 14 ASP A 275 GLU A 292 1 18 HELIX 15 15 PRO A 298 ASN A 311 1 14 HELIX 16 16 ASN A 311 LEU A 343 1 33 HELIX 17 17 GLU A 350 GLN A 355 1 6 HELIX 18 18 SER A 365 HIS A 375 1 11 HELIX 19 19 ALA A 388 LEU A 390 5 3 HELIX 20 20 THR A 391 ARG A 407 1 17 HELIX 21 21 THR B 8 LYS B 15 1 8 HELIX 22 22 ASP B 22 ALA B 34 1 13 HELIX 23 23 LEU B 56 MET B 69 1 14 HELIX 24 24 TYR B 81 GLY B 94 1 14 HELIX 25 25 THR B 96 GLU B 100 5 5 HELIX 26 26 SER B 109 THR B 122 1 14 HELIX 27 27 PRO B 140 ALA B 149 1 10 HELIX 28 28 ASN B 168 ALA B 179 1 12 HELIX 29 29 SER B 200 LYS B 214 1 15 HELIX 30 30 SER B 231 ALA B 236 1 6 HELIX 31 31 ALA B 236 ARG B 245 1 10 HELIX 32 32 LEU B 261 GLU B 264 5 4 HELIX 33 33 ASP B 275 THR B 277 5 3 HELIX 34 34 LYS B 278 GLU B 292 1 15 HELIX 35 35 PRO B 298 ASN B 311 1 14 HELIX 36 36 ASN B 311 LEU B 343 1 33 HELIX 37 37 GLU B 350 GLN B 355 1 6 HELIX 38 38 SER B 365 HIS B 375 1 11 HELIX 39 39 ALA B 388 LEU B 390 5 3 HELIX 40 40 THR B 391 VAL B 409 1 19 SHEET 1 A 2 ALA A 39 ASN A 40 0 SHEET 2 A 2 ILE A 377 PHE A 378 1 O PHE A 378 N ALA A 39 SHEET 1 B 7 LEU A 102 LEU A 108 0 SHEET 2 B 7 ALA A 266 LEU A 272 -1 O LEU A 271 N VAL A 103 SHEET 3 B 7 LEU A 250 SER A 254 -1 N GLN A 253 O THR A 268 SHEET 4 B 7 GLN A 217 SER A 222 1 N SER A 222 O ALA A 252 SHEET 5 B 7 VAL A 184 HIS A 188 1 N PHE A 185 O GLN A 217 SHEET 6 B 7 ILE A 132 ASP A 136 1 N TYR A 133 O VAL A 184 SHEET 7 B 7 ILE A 154 ALA A 158 1 O CYS A 155 N ILE A 132 SHEET 1 C 2 TYR A 160 ASP A 161 0 SHEET 2 C 2 SER A 166 LEU A 167 -1 O SER A 166 N ASP A 161 SHEET 1 D 2 PHE A 359 PHE A 361 0 SHEET 2 D 2 ARG A 384 ASN A 386 -1 O ALA A 385 N SER A 360 SHEET 1 E 2 ALA B 39 ASN B 40 0 SHEET 2 E 2 ILE B 377 PHE B 378 1 O PHE B 378 N ALA B 39 SHEET 1 F 7 LEU B 102 LEU B 108 0 SHEET 2 F 7 ALA B 266 LEU B 272 -1 O LEU B 269 N VAL B 105 SHEET 3 F 7 LEU B 250 SER B 254 -1 N GLN B 253 O THR B 268 SHEET 4 F 7 GLN B 217 SER B 222 1 N SER B 222 O ALA B 252 SHEET 5 F 7 VAL B 184 HIS B 188 1 N PHE B 185 O GLN B 217 SHEET 6 F 7 ILE B 132 ASP B 136 1 N TYR B 133 O VAL B 184 SHEET 7 F 7 ILE B 154 ALA B 158 1 O CYS B 155 N ILE B 132 SHEET 1 G 2 TYR B 160 ASP B 161 0 SHEET 2 G 2 SER B 166 LEU B 167 -1 O SER B 166 N ASP B 161 SHEET 1 H 2 PHE B 359 PHE B 361 0 SHEET 2 H 2 ARG B 384 ASN B 386 -1 O ALA B 385 N SER B 360 LINK C SER A 256 N LLP A 257 1555 1555 1.34 LINK C LLP A 257 N ASN A 258 1555 1555 1.33 LINK C SER B 256 N LLP B 257 1555 1555 1.32 LINK C LLP B 257 N ASN B 258 1555 1555 1.33 CISPEP 1 ASP A 136 PRO A 137 0 -5.60 CISPEP 2 ASN A 193 PRO A 194 0 18.28 CISPEP 3 ASP B 136 PRO B 137 0 -2.36 CISPEP 4 ASN B 193 PRO B 194 0 18.21 SITE 1 AC1 4 TYR A 46 ASP A 48 GLU A 49 TYR A 54 SITE 1 AC2 5 TYR B 46 ASP B 48 GLU B 49 TYR B 54 SITE 2 AC2 5 ARG B 328 CRYST1 61.410 93.670 74.590 90.00 106.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016284 0.000000 0.004847 0.00000 SCALE2 0.000000 0.010676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013988 0.00000