HEADER HYDROLASE 13-JUN-15 5C1E TITLE CRYSTAL STRUCTURE OF THE PECTIN METHYLESTERASE FROM ASPERGILLUS NIGER TITLE 2 IN PENULTIMATELY DEGLYCOSYLATED FORM (N-ACETYLGLUCOSAMINE STUB AT TITLE 3 ASN84) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PECTINESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL TRUNCATED EXPORTED PROTEIN; COMPND 5 EC: 3.1.1.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-ACETYLGLUCOSAMINE STUB AT ASN84 (ABOVE SEQUENCE) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER (STRAIN ATCC 1015 / CBS SOURCE 3 113.46 / FGSC A1144 / LSHB AC4 / NCTC 3858A / NRRL 328 / USDA SOURCE 4 3528.7); SOURCE 5 ORGANISM_TAXID: 380704; SOURCE 6 STRAIN: VAN TIEGHEM, ANAMORPH; SOURCE 7 ATCC: ATCC 11414; SOURCE 8 GENE: ASPNIDRAFT_214857; SOURCE 9 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: INVSC1; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PYES2 KEYWDS PARALLEL BETA HELIX, PECTIN METHYLESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.B.JAMESON,M.A.K.WILLIAMS,T.S.LOO,L.M.KENT,L.D.MELTON,D.MERCADANTE REVDAT 6 27-SEP-23 5C1E 1 HETSYN REVDAT 5 29-JUL-20 5C1E 1 COMPND REMARK HETNAM SITE REVDAT 4 01-NOV-17 5C1E 1 JRNL REMARK REVDAT 3 03-FEB-16 5C1E 1 JRNL REVDAT 2 02-DEC-15 5C1E 1 JRNL REVDAT 1 01-JUL-15 5C1E 0 JRNL AUTH L.M.KENT,T.S.LOO,L.D.MELTON,D.MERCADANTE,M.A.WILLIAMS, JRNL AUTH 2 G.B.JAMESON JRNL TITL STRUCTURE AND PROPERTIES OF A NON-PROCESSIVE, JRNL TITL 2 SALT-REQUIRING, AND ACIDOPHILIC PECTIN METHYLESTERASE FROM JRNL TITL 3 ASPERGILLUS NIGER PROVIDE INSIGHTS INTO THE KEY DETERMINANTS JRNL TITL 4 OF PROCESSIVITY CONTROL. JRNL REF J.BIOL.CHEM. V. 291 1289 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26567911 JRNL DOI 10.1074/JBC.M115.673152 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.MERCADANTE,L.D.MELTON,G.B.JAMESON,M.A.K.WILLIAMS REMARK 1 TITL PROCESSIVE PECTIN METHYLESTERASES: THE ROLE OF ELECTROSTATIC REMARK 1 TITL 2 POTENTIAL, BREATHING MOTIONS AND BOND CLEAVAGE IN THE REMARK 1 TITL 3 RECTIFICATION OF BROWNIAN MOTIONS REMARK 1 REF PLOS ONE V. 9 87581 2014 REMARK 1 REFN ESSN 1932-6203 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.MERCADANTE,L.D.MELTON,G.B.JAMESON,M.A.K.WILLIAMS, REMARK 1 AUTH 2 A.DE SIMONE REMARK 1 TITL SUBSTRATE DYNAMICS IN ENZYME ACTION: ROTATIONS OF REMARK 1 TITL 2 MONOSACCHARIDE SUBUNITS IN THE BINDING GROOVE ARE ESSENTIAL REMARK 1 TITL 3 FOR PECTIN METHYLESTERASE PROCESSIVITY REMARK 1 REF BIOPHYS J V. 104 1731 2013 REMARK 1 REFN ISSN 0006-3495 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 34821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.407 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2466 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2108 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3376 ; 1.305 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4866 ; 0.746 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;33.974 ;25.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;10.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.627 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2883 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 551 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1254 ; 0.832 ; 1.737 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1251 ; 0.831 ; 1.732 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1577 ; 1.317 ; 2.597 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2157 25.7632 12.2763 REMARK 3 T TENSOR REMARK 3 T11: 0.0031 T22: 0.0075 REMARK 3 T33: 0.0122 T12: -0.0038 REMARK 3 T13: 0.0008 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0394 L22: 0.1742 REMARK 3 L33: 0.5202 L12: -0.0818 REMARK 3 L13: -0.0987 L23: 0.2029 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0092 S13: 0.0006 REMARK 3 S21: 0.0002 S22: 0.0145 S23: 0.0045 REMARK 3 S31: 0.0106 S32: 0.0245 S33: -0.0144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5C1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000210864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 3.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : AXCO PX70 QUARTZ GLASS CAPILLARY REMARK 200 OPTIC REMARK 200 OPTICS : AXCO PX70 QUARTZ GLASS CAPILLARY REMARK 200 OPTIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 36.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.940 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.71 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 1XG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (6.5 MG/ML) IN 50-100 MM REMARK 280 ACETATE BUFFER MIXED 1:1 WITH 1.9 M AMMONIUM SULFATE, 100 MM REMARK 280 SODIUM ACETATE, PH 3.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.38250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.38250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.30700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.77150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.30700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.77150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.38250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.30700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.77150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.38250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.30700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.77150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 GOL A 410 LIES ON A SPECIAL POSITION. REMARK 375 C ACT A 412 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 507 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 409 O HOH A 506 2.09 REMARK 500 O HOH A 636 O HOH A 692 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 84 CG ASN A 84 ND2 0.217 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 84 OD1 - CG - ND2 ANGL. DEV. = 18.1 DEGREES REMARK 500 ASN A 84 CB - CG - ND2 ANGL. DEV. = -21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 166 -70.72 -128.32 REMARK 500 ALA A 187 -45.84 -131.14 REMARK 500 ASP A 266 0.59 -67.14 REMARK 500 MET A 276 -82.66 -157.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 225 TYR A 226 148.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5C1C RELATED DB: PDB REMARK 900 DEGLYCOSYLATED FORM OF THIS PROTEIN DBREF 5C1E A 29 327 UNP G3YAL0 G3YAL0_ASPNA 29 327 SEQRES 1 A 299 GLU SER ARG THR SER ALA PRO SER GLY CYS LEU THR VAL SEQRES 2 A 299 GLY SER ASP GLY THR TYR SER THR ILE GLY ASP ALA LEU SEQRES 3 A 299 ASP ALA LEU GLY SER SER THR SER SER ALA CYS ILE TYR SEQRES 4 A 299 VAL ALA SER GLY THR TYR GLU GLU GLN LEU THR ILE ASP SEQRES 5 A 299 TYR ALA GLY ASN LEU THR LEU TYR GLY GLU THR THR ASP SEQRES 6 A 299 THR SER THR TYR LYS ASP ASN VAL VAL THR ILE THR HIS SEQRES 7 A 299 THR ILE SER SER PRO ASP ALA GLY SER LEU ASP LYS SER SEQRES 8 A 299 ALA THR VAL ASN VAL VAL SER ASP GLY PHE SER MET TYR SEQRES 9 A 299 ASN ILE ASN VAL GLU ASN GLY TYR GLY GLU GLY ALA GLN SEQRES 10 A 299 ALA VAL ALA LEU VAL GLY ASN ALA ASP GLN LEU GLY PHE SEQRES 11 A 299 TYR GLY CYS GLN PHE SER GLY TYR GLN ASP THR LEU TYR SEQRES 12 A 299 VAL LYS ALA GLY THR GLN TYR TYR SER ASN CYS MET ILE SEQRES 13 A 299 GLU GLY ALA VAL ASP TYR ILE PHE GLY ASP ALA SER VAL SEQRES 14 A 299 TRP PHE GLY GLU CYS ASP ILE VAL SER ASN GLY ALA GLY SEQRES 15 A 299 ALA ILE THR ALA SER SER ARG GLU THR SER SER ASP SER SEQRES 16 A 299 GLY TRP TYR ALA ILE ASP ASN CYS ASN ILE LYS ALA ALA SEQRES 17 A 299 SER GLY VAL SER LEU THR GLU GLU VAL TYR LEU GLY ARG SEQRES 18 A 299 PRO TRP ARG VAL LEU ALA ARG VAL ILE TYR GLN ASN SER SEQRES 19 A 299 VAL LEU SER ASP ILE ILE ASN PRO LYS GLY TRP THR THR SEQRES 20 A 299 MET ALA ASP GLY ALA THR PRO LEU TYR TYR GLU TYR ASN SEQRES 21 A 299 ASN SER GLY ALA GLY SER ASP THR SER ASP ARG GLU TYR SEQRES 22 A 299 GLU THR SER ILE SER ALA ALA VAL ASP LYS THR THR VAL SEQRES 23 A 299 LEU GLY GLU THR TRP GLY ASP TRP ILE ASP ARG SER TYR HET NAG A 401 28 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET CL A 407 1 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HET GOL A 411 6 HET ACT A 412 4 HET GOL A 413 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 CL CL 1- FORMUL 9 GOL 5(C3 H8 O3) FORMUL 13 ACT C2 H3 O2 1- FORMUL 15 HOH *323(H2 O) HELIX 1 AA1 THR A 49 GLY A 58 1 10 HELIX 2 AA2 SER A 109 GLY A 114 1 6 HELIX 3 AA3 LEU A 116 ALA A 120 5 5 HELIX 4 AA4 ASP A 310 GLY A 316 1 7 HELIX 5 AA5 THR A 318 TRP A 322 5 5 SHEET 1 AA110 LEU A 39 VAL A 41 0 SHEET 2 AA110 ALA A 64 VAL A 68 1 O TYR A 67 N LEU A 39 SHEET 3 AA110 LEU A 85 GLY A 89 1 O TYR A 88 N ILE A 66 SHEET 4 AA110 SER A 130 TYR A 132 1 O SER A 130 N LEU A 87 SHEET 5 AA110 LEU A 156 TYR A 159 1 O TYR A 159 N MET A 131 SHEET 6 AA110 THR A 176 SER A 180 1 O SER A 180 N PHE A 158 SHEET 7 AA110 SER A 196 GLY A 200 1 O GLY A 200 N TYR A 179 SHEET 8 AA110 TYR A 226 ASP A 229 1 O ASP A 229 N PHE A 199 SHEET 9 AA110 ARG A 256 GLN A 260 1 O ILE A 258 N ILE A 228 SHEET 10 AA110 LEU A 283 TYR A 287 1 O TYR A 285 N VAL A 257 SHEET 1 AA2 8 GLY A 71 GLU A 74 0 SHEET 2 AA2 8 VAL A 102 HIS A 106 1 O THR A 103 N TYR A 73 SHEET 3 AA2 8 ASN A 135 ASN A 138 1 O ASN A 135 N ILE A 104 SHEET 4 AA2 8 GLN A 162 SER A 164 1 O GLN A 162 N VAL A 136 SHEET 5 AA2 8 MET A 183 GLY A 186 1 O GLU A 185 N PHE A 163 SHEET 6 AA2 8 ASP A 203 SER A 206 1 O VAL A 205 N ILE A 184 SHEET 7 AA2 8 ASN A 232 ALA A 235 1 O ASN A 232 N ILE A 204 SHEET 8 AA2 8 VAL A 263 LEU A 264 1 O VAL A 263 N ILE A 233 SHEET 1 AA3 7 LEU A 77 ILE A 79 0 SHEET 2 AA3 7 VAL A 122 VAL A 124 1 O ASN A 123 N ILE A 79 SHEET 3 AA3 7 LEU A 149 ASN A 152 1 O VAL A 150 N VAL A 124 SHEET 4 AA3 7 LEU A 170 ALA A 174 1 O TYR A 171 N GLY A 151 SHEET 5 AA3 7 ILE A 191 GLY A 193 1 O PHE A 192 N LEU A 170 SHEET 6 AA3 7 GLY A 210 SER A 215 1 O ALA A 214 N ILE A 191 SHEET 7 AA3 7 VAL A 245 GLY A 248 1 O TYR A 246 N ILE A 212 SSBOND 1 CYS A 38 CYS A 65 1555 1555 2.11 CRYST1 74.614 113.543 88.765 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013402 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011266 0.00000