HEADER ISOMERASE 01-SEP-15 5DIU TITLE THE FK1 DOMAIN OF FKBP51 IN COMPLEX WITH THE NEW SYNTHETIC LIGAND 2- TITLE 2 (3-((R)-1-((S)-1-((S)-2-CYCLOHEXYL-2-(3,4,5-TRIMETHOXYPHENYL)ACETYL) TITLE 3 PIPERIDINE-2-CARBOXAMIDO)-3-(3,4-DIMETHOXYPHENYL)PROPYL)PHENOXY) TITLE 4 ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FK1 DOMAIN, UNP RESIDUES 16-140; COMPND 5 SYNONYM: PPIASE FKBP5,51 KDA FK506-BINDING PROTEIN,FKBP-51,54 KDA COMPND 6 PROGESTERONE RECEPTOR-ASSOCIATED IMMUNOPHILIN,ANDROGEN-REGULATED COMPND 7 PROTEIN 6,FF1 ANTIGEN,FK506-BINDING PROTEIN 5,FKBP-5,FKBP54,P54, COMPND 8 HSP90-BINDING IMMUNOPHILIN,ROTAMASE; COMPND 9 EC: 5.2.1.8; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKBP5, AIG6, FKBP51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON+ RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB KEYWDS FK-506 BINDING DOMAIN, HSP90 COCHAPERONE, IMMUNOPHILINE, PEPTIDYL- KEYWDS 2 PROLYL ISOMERASE, LIGAND SELECTIVITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GAALI,X.FENG,C.SIPPEL,A.BRACHER,F.HAUSCH REVDAT 3 10-JAN-24 5DIU 1 REMARK REVDAT 2 06-APR-16 5DIU 1 JRNL REVDAT 1 23-MAR-16 5DIU 0 JRNL AUTH S.GAALI,X.FENG,A.HAHLE,C.SIPPEL,A.BRACHER,F.HAUSCH JRNL TITL RAPID, STRUCTURE-BASED EXPLORATION OF PIPECOLIC ACID AMIDES JRNL TITL 2 AS NOVEL SELECTIVE ANTAGONISTS OF THE FK506-BINDING PROTEIN JRNL TITL 3 51. JRNL REF J.MED.CHEM. V. 59 2410 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 26954324 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01355 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 29490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.896 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1123 ; 0.025 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1091 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1519 ; 2.374 ; 2.031 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2540 ; 1.110 ; 3.015 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 8.575 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;27.451 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 199 ;15.054 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 7.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 158 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1255 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 234 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2214 ; 6.089 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 45 ;30.975 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2278 ;11.681 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5DIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000213272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03679 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS SEPTEMBER 26, 2012 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31101 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.301 REMARK 200 RESOLUTION RANGE LOW (A) : 48.414 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.04300 REMARK 200 R SYM FOR SHELL (I) : 1.04300 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.35 REMARK 200 STARTING MODEL: 3O5Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG-3350, 0.2 M NH4-ACETATE AND REMARK 280 0.1 M HEPES-NAOH PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.51450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.42600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.20700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.42600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.51450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.20700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 63 CG OD1 ND2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ASN A 74 CG OD1 ND2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 45 O HOH A 301 2.05 REMARK 500 O HOH A 349 O HOH A 408 2.10 REMARK 500 O HOH A 328 O HOH A 431 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 76 CA PRO A 76 C 0.126 REMARK 500 GLU A 110 CD GLU A 110 OE1 0.091 REMARK 500 GLU A 110 CD GLU A 110 OE2 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 48 CG - SD - CE ANGL. DEV. = -17.5 DEGREES REMARK 500 LYS A 52 CD - CE - NZ ANGL. DEV. = 19.6 DEGREES REMARK 500 PHE A 77 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 56.25 -110.86 REMARK 500 ALA A 112 -108.99 -136.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 64 LYS A 65 -125.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5BG A 201 DBREF 5DIU A 16 140 UNP Q13451 FKBP5_HUMAN 16 140 SEQADV 5DIU GLY A 13 UNP Q13451 EXPRESSION TAG SEQADV 5DIU ALA A 14 UNP Q13451 EXPRESSION TAG SEQADV 5DIU PRO A 15 UNP Q13451 EXPRESSION TAG SEQADV 5DIU THR A 19 UNP Q13451 ALA 19 ENGINEERED MUTATION SEQRES 1 A 128 GLY ALA PRO ALA THR VAL THR GLU GLN GLY GLU ASP ILE SEQRES 2 A 128 THR SER LYS LYS ASP ARG GLY VAL LEU LYS ILE VAL LYS SEQRES 3 A 128 ARG VAL GLY ASN GLY GLU GLU THR PRO MET ILE GLY ASP SEQRES 4 A 128 LYS VAL TYR VAL HIS TYR LYS GLY LYS LEU SER ASN GLY SEQRES 5 A 128 LYS LYS PHE ASP SER SER HIS ASP ARG ASN GLU PRO PHE SEQRES 6 A 128 VAL PHE SER LEU GLY LYS GLY GLN VAL ILE LYS ALA TRP SEQRES 7 A 128 ASP ILE GLY VAL ALA THR MET LYS LYS GLY GLU ILE CYS SEQRES 8 A 128 HIS LEU LEU CYS LYS PRO GLU TYR ALA TYR GLY SER ALA SEQRES 9 A 128 GLY SER LEU PRO LYS ILE PRO SER ASN ALA THR LEU PHE SEQRES 10 A 128 PHE GLU ILE GLU LEU LEU ASP PHE LYS GLY GLU HET 5BG A 201 54 HETNAM 5BG {3-[(1R)-1-[({(2S)-1-[(2S)-2-CYCLOHEXYL-2-(3,4,5- HETNAM 2 5BG TRIMETHOXYPHENYL)ACETYL]PIPERIDIN-2-YL}CARBONYL) HETNAM 3 5BG AMINO]-3-(3,4-DIMETHOXYPHENYL)PROPYL]PHENOXY}ACETIC HETNAM 4 5BG ACID FORMUL 2 5BG C42 H54 N2 O10 FORMUL 3 HOH *140(H2 O) HELIX 1 AA1 GLY A 13 GLY A 22 1 10 HELIX 2 AA2 HIS A 71 ARG A 73 5 3 HELIX 3 AA3 ILE A 87 ALA A 95 1 9 HELIX 4 AA4 PRO A 109 ALA A 112 5 4 SHEET 1 AA1 6 GLU A 23 ASP A 24 0 SHEET 2 AA1 6 VAL A 33 ARG A 39 -1 O LYS A 35 N GLU A 23 SHEET 3 AA1 6 ILE A 102 CYS A 107 -1 O HIS A 104 N ILE A 36 SHEET 4 AA1 6 LEU A 128 LYS A 138 -1 O LEU A 128 N CYS A 107 SHEET 5 AA1 6 LYS A 52 LEU A 61 -1 N HIS A 56 O GLU A 133 SHEET 6 AA1 6 PHE A 67 SER A 69 -1 O ASP A 68 N GLY A 59 SHEET 1 AA2 6 GLU A 23 ASP A 24 0 SHEET 2 AA2 6 VAL A 33 ARG A 39 -1 O LYS A 35 N GLU A 23 SHEET 3 AA2 6 ILE A 102 CYS A 107 -1 O HIS A 104 N ILE A 36 SHEET 4 AA2 6 LEU A 128 LYS A 138 -1 O LEU A 128 N CYS A 107 SHEET 5 AA2 6 LYS A 52 LEU A 61 -1 N HIS A 56 O GLU A 133 SHEET 6 AA2 6 PHE A 77 SER A 80 -1 O PHE A 79 N VAL A 53 CISPEP 1 LEU A 119 PRO A 120 0 4.48 SITE 1 AC1 21 GLU A 20 ARG A 31 TYR A 57 LYS A 66 SITE 2 AC1 21 ASP A 68 PHE A 77 GLY A 84 GLN A 85 SITE 3 AC1 21 VAL A 86 ILE A 87 TRP A 90 LYS A 108 SITE 4 AC1 21 TYR A 113 LYS A 121 LEU A 128 HOH A 341 SITE 5 AC1 21 HOH A 347 HOH A 348 HOH A 362 HOH A 372 SITE 6 AC1 21 HOH A 391 CRYST1 45.029 48.414 56.852 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017590 0.00000