HEADER TRANSFERASE 11-JUL-16 5KT4 TITLE TERANRY COMPLEX OF HUMAN DNA POLYMERASE IOTA R96G INSERTING DCMPNPP TITLE 2 OPPOSITE TEMPLATE G IN THE PRESENCE OF MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE IOTA; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: UNP RESIDUES 1-445; COMPND 13 SYNONYM: ETA2,RAD30 HOMOLOG B; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: POLI, RAD30B; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE, POLI, R96G, MAGNESIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.CHOI,A.PATRA,M.YEOM,Y.S.LEE,Q.ZHANG,M.EGLI,F.P.GUENGERICH REVDAT 6 06-MAR-24 5KT4 1 REMARK REVDAT 5 18-DEC-19 5KT4 1 REMARK REVDAT 4 13-SEP-17 5KT4 1 JRNL REMARK REVDAT 3 19-OCT-16 5KT4 1 JRNL REVDAT 2 07-SEP-16 5KT4 1 JRNL REVDAT 1 31-AUG-16 5KT4 0 JRNL AUTH J.Y.CHOI,A.PATRA,M.YEOM,Y.S.LEE,Q.ZHANG,M.EGLI, JRNL AUTH 2 F.P.GUENGERICH JRNL TITL KINETIC AND STRUCTURAL IMPACT OF METAL IONS AND GENETIC JRNL TITL 2 VARIATIONS ON HUMAN DNA POLYMERASE IOTA. JRNL REF J.BIOL.CHEM. V. 291 21063 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27555320 JRNL DOI 10.1074/JBC.M116.748285 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0671 - 5.0457 1.00 2588 146 0.2131 0.2124 REMARK 3 2 5.0457 - 4.0055 1.00 2456 105 0.1922 0.2349 REMARK 3 3 4.0055 - 3.4993 1.00 2358 154 0.2146 0.2517 REMARK 3 4 3.4993 - 3.1794 1.00 2361 144 0.2287 0.2901 REMARK 3 5 3.1794 - 2.9516 1.00 2342 139 0.2581 0.3100 REMARK 3 6 2.9516 - 2.7776 1.00 2352 107 0.2636 0.2927 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3344 REMARK 3 ANGLE : 0.653 4604 REMARK 3 CHIRALITY : 0.041 546 REMARK 3 PLANARITY : 0.004 534 REMARK 3 DIHEDRAL : 16.753 1983 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.92200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG MME 5000, 0.1M MES BUFFER, REMARK 280 0.3M AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.14667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.57333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.36000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.78667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 168.93333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.14667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.57333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.78667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.36000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 168.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 465 ASP A 15 REMARK 465 ASP A 16 REMARK 465 ASP A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 ALA A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 TRP A 24 REMARK 465 ALA A 25 REMARK 465 MET A 26 REMARK 465 GLU A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 ASP A 30 REMARK 465 VAL A 31 REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 GLN A 38 REMARK 465 GLY A 39 REMARK 465 VAL A 40 REMARK 465 HIS A 41 REMARK 465 ASP A 42 REMARK 465 GLN A 43 REMARK 465 VAL A 44 REMARK 465 LEU A 45 REMARK 465 PRO A 46 REMARK 465 THR A 47 REMARK 465 PRO A 48 REMARK 465 ASN A 49 REMARK 465 ALA A 50 REMARK 465 SER A 375 REMARK 465 SER A 376 REMARK 465 GLU A 377 REMARK 465 LYS A 378 REMARK 465 HIS A 379 REMARK 465 TYR A 380 REMARK 465 THR A 399 REMARK 465 GLY A 400 REMARK 465 ASN A 401 REMARK 465 MET A 424 REMARK 465 PRO A 425 REMARK 465 ALA A 440 REMARK 465 LEU A 441 REMARK 465 ASN A 442 REMARK 465 THR A 443 REMARK 465 ALA A 444 REMARK 465 LYS A 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 TYR A 93 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 VAL A 340 CG1 CG2 REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 CYS A 358 SG REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 TYR A 374 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 395 CG CD OE1 NE2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 TYR A 402 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 410 CG OD1 OD2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LYS A 439 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 841 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 62 66.88 26.03 REMARK 500 LYS A 85 -119.76 57.20 REMARK 500 CYS A 113 83.50 -151.38 REMARK 500 LYS A 396 68.35 -102.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 59 OD2 REMARK 620 2 LEU A 60 O 85.3 REMARK 620 3 ASP A 151 OD2 87.0 99.8 REMARK 620 4 0KX A 501 O1G 93.5 93.6 166.5 REMARK 620 5 0KX A 501 O2B 175.3 94.7 97.6 81.8 REMARK 620 6 0KX A 501 O1A 105.4 169.0 79.0 87.9 74.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0KX A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KT2 RELATED DB: PDB REMARK 900 RELATED ID: 5KT3 RELATED DB: PDB REMARK 900 RELATED ID: 5KT5 RELATED DB: PDB REMARK 900 RELATED ID: 5KT6 RELATED DB: PDB REMARK 900 RELATED ID: 5KT7 RELATED DB: PDB DBREF 5KT4 T 838 847 PDB 5KT4 5KT4 838 847 DBREF 5KT4 P 867 873 PDB 5KT4 5KT4 867 873 DBREF 5KT4 A 1 445 UNP Q9UNA4 POLI_HUMAN 1 445 SEQADV 5KT4 GLY A 96 UNP Q9UNA4 ARG 96 ENGINEERED MUTATION SEQRES 1 T 10 DC DT DG DG DG DG DT DC DC DT SEQRES 1 P 7 DA DG DG DA DC DC DC SEQRES 1 A 445 MET GLU LYS LEU GLY VAL GLU PRO GLU GLU GLU GLY GLY SEQRES 2 A 445 GLY ASP ASP ASP GLU GLU ASP ALA GLU ALA TRP ALA MET SEQRES 3 A 445 GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN GLY SEQRES 4 A 445 VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SER SEQRES 5 A 445 ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR ALA SEQRES 6 A 445 GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP LYS SEQRES 7 A 445 PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR CYS SEQRES 8 A 445 ASN TYR GLU ALA GLY LYS LEU GLY VAL LYS LYS LEU MET SEQRES 9 A 445 ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU VAL SEQRES 10 A 445 LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU MET SEQRES 11 A 445 SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER PRO SEQRES 12 A 445 VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL ASP SEQRES 13 A 445 LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU GLN SEQRES 14 A 445 SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS VAL SEQRES 15 A 445 TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU HIS SEQRES 16 A 445 ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU MET SEQRES 17 A 445 ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY CYS SEQRES 18 A 445 ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU VAL SEQRES 19 A 445 SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU LEU SEQRES 20 A 445 PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN HIS SEQRES 21 A 445 ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA LYS SEQRES 22 A 445 CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP LEU SEQRES 23 A 445 GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU GLY SEQRES 24 A 445 ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE GLY SEQRES 25 A 445 GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO GLN SEQRES 26 A 445 SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SER SEQRES 27 A 445 GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU ALA SEQRES 28 A 445 SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS PRO SEQRES 29 A 445 HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER GLU SEQRES 30 A 445 LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE PRO SEQRES 31 A 445 SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR ASP SEQRES 32 A 445 VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU PHE SEQRES 33 A 445 ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU THR SEQRES 34 A 445 LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU ASN SEQRES 35 A 445 THR ALA LYS HET 0KX A 501 28 HET MG A 502 1 HETNAM 0KX 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 0KX PHOSPHORYL]AMINO}PHOSPHORYL]CYTIDINE HETNAM MG MAGNESIUM ION FORMUL 4 0KX C9 H17 N4 O12 P3 FORMUL 5 MG MG 2+ FORMUL 6 HOH *22(H2 O) HELIX 1 AA1 CYS A 62 ASN A 72 1 11 HELIX 2 AA2 PRO A 73 ASP A 77 5 5 HELIX 3 AA3 ASN A 92 LEU A 98 1 7 HELIX 4 AA4 VAL A 106 CYS A 113 1 8 HELIX 5 AA5 LEU A 124 SER A 142 1 19 HELIX 6 AA6 LEU A 157 GLN A 167 1 11 HELIX 7 AA7 GLN A 169 SER A 174 1 6 HELIX 8 AA8 ASN A 184 GLN A 186 5 3 HELIX 9 AA9 ASP A 192 GLY A 217 1 26 HELIX 10 AB1 ASN A 227 GLY A 236 1 10 HELIX 11 AB2 LEU A 247 GLU A 249 5 3 HELIX 12 AB3 SER A 250 LEU A 258 1 9 HELIX 13 AB4 HIS A 260 ILE A 264 5 5 HELIX 14 AB5 GLY A 268 ALA A 277 1 10 HELIX 15 AB6 SER A 282 PHE A 289 1 8 HELIX 16 AB7 SER A 290 GLY A 299 1 10 HELIX 17 AB8 GLY A 299 SER A 310 1 12 HELIX 18 AB9 SER A 338 GLY A 361 1 24 HELIX 19 AC1 PRO A 390 LYS A 396 1 7 HELIX 20 AC2 VAL A 404 VAL A 420 1 17 SHEET 1 AA1 6 VAL A 145 LEU A 148 0 SHEET 2 AA1 6 GLU A 152 ASP A 156 -1 O GLU A 152 N LEU A 148 SHEET 3 AA1 6 ILE A 55 LEU A 60 -1 N VAL A 58 O ASN A 153 SHEET 4 AA1 6 GLY A 220 ALA A 225 -1 O CYS A 221 N ASP A 59 SHEET 5 AA1 6 GLN A 243 VAL A 245 1 O THR A 244 N ALA A 222 SHEET 6 AA1 6 HIS A 181 VAL A 182 1 N HIS A 181 O GLN A 243 SHEET 1 AA2 4 MET A 104 ASN A 105 0 SHEET 2 AA2 4 LEU A 87 CYS A 91 -1 N VAL A 88 O MET A 104 SHEET 3 AA2 4 LEU A 80 GLN A 84 -1 N GLN A 84 O LEU A 87 SHEET 4 AA2 4 VAL A 117 ASN A 120 1 O VAL A 119 N GLN A 83 SHEET 1 AA3 4 SER A 326 SER A 332 0 SHEET 2 AA3 4 LEU A 428 LEU A 438 -1 O LEU A 431 N ASP A 331 SHEET 3 AA3 4 PRO A 364 ARG A 373 -1 N ILE A 370 O SER A 432 SHEET 4 AA3 4 ARG A 382 PRO A 388 -1 O CYS A 387 N VAL A 367 LINK OD2 ASP A 59 MG MG A 502 1555 1555 2.05 LINK O LEU A 60 MG MG A 502 1555 1555 2.18 LINK OD2 ASP A 151 MG MG A 502 1555 1555 2.09 LINK O1G 0KX A 501 MG MG A 502 1555 1555 2.05 LINK O2B 0KX A 501 MG MG A 502 1555 1555 2.05 LINK O1A 0KX A 501 MG MG A 502 1555 1555 2.34 CISPEP 1 LYS A 239 PRO A 240 0 -3.39 SITE 1 AC1 16 ASP A 59 LEU A 60 ASP A 61 CYS A 62 SITE 2 AC1 16 PHE A 63 TYR A 64 VAL A 89 THR A 90 SITE 3 AC1 16 LYS A 102 ASP A 151 LYS A 239 MG A 502 SITE 4 AC1 16 HOH A 609 DC P 873 DG T 840 DG T 841 SITE 1 AC2 4 ASP A 59 LEU A 60 ASP A 151 0KX A 501 CRYST1 98.119 98.119 202.720 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010192 0.005884 0.000000 0.00000 SCALE2 0.000000 0.011768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004933 0.00000