HEADER IMMUNE SYSTEM 15-FEB-18 6FR9 TITLE F11 T-CELL RECEPTOR RECOGNISING PKYVKQNTLKLAT PEPTIDE PRESENTED BY TITLE 2 HLA-DR*0101 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR F11 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T-CELL RECEPTOR F11 BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T CELL RECEPTOR, HUMAN LEUKOCYTE ANTIGEN, INFLUENZA EPITOPE, KEYWDS 2 HAEMAGGLUTININ, 3D STRUCTURE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE REVDAT 3 17-JAN-24 6FR9 1 REMARK REVDAT 2 09-MAY-18 6FR9 1 COMPND JRNL HETNAM REVDAT 1 18-APR-18 6FR9 0 JRNL AUTH C.J.HOLLAND,B.J.MACLACHLAN,V.BIANCHI,S.J.HESKETH,R.MORGAN, JRNL AUTH 2 O.VICKERY,A.M.BULEK,A.FULLER,A.GODKIN,A.K.SEWELL, JRNL AUTH 3 P.J.RIZKALLAH,S.WELLS,D.K.COLE JRNL TITL IN SILICOAND STRUCTURAL ANALYSES DEMONSTRATE THAT INTRINSIC JRNL TITL 2 PROTEIN MOTIONS GUIDE T CELL RECEPTOR COMPLEMENTARITY JRNL TITL 3 DETERMINING REGION LOOP FLEXIBILITY. JRNL REF FRONT IMMUNOL V. 9 674 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 29696015 JRNL DOI 10.3389/FIMMU.2018.00674 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 61390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3493 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3734 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3305 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5082 ; 1.902 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7713 ; 1.063 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 7.117 ; 5.021 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;39.230 ;24.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;14.461 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4200 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 771 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1825 ; 1.011 ; 1.493 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1824 ; 1.008 ; 1.492 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2296 ; 1.658 ; 2.232 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2297 ; 1.658 ; 2.234 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1907 ; 1.485 ; 1.699 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1903 ; 1.481 ; 1.694 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2774 ; 2.223 ; 2.456 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4025 ; 5.926 ;19.044 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3937 ; 5.826 ;18.309 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1246 5.3584 -21.7997 REMARK 3 T TENSOR REMARK 3 T11: 0.0392 T22: 0.0172 REMARK 3 T33: 0.0591 T12: 0.0218 REMARK 3 T13: -0.0270 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 5.3189 L22: 1.1485 REMARK 3 L33: 1.2963 L12: 0.0146 REMARK 3 L13: -0.7930 L23: 0.3720 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: 0.1333 S13: -0.0799 REMARK 3 S21: -0.0719 S22: -0.0661 S23: 0.1661 REMARK 3 S31: -0.0752 S32: -0.0786 S33: -0.0083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0145 11.7450 -15.5565 REMARK 3 T TENSOR REMARK 3 T11: 0.0196 T22: 0.0345 REMARK 3 T33: 0.0781 T12: -0.0033 REMARK 3 T13: 0.0022 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.2047 L22: 3.7629 REMARK 3 L33: 3.1268 L12: -1.1480 REMARK 3 L13: -0.5037 L23: 0.8659 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: -0.1774 S13: -0.0919 REMARK 3 S21: 0.1867 S22: 0.1533 S23: -0.1667 REMARK 3 S31: 0.0024 S32: 0.2316 S33: -0.0891 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9244 16.2690 -0.7321 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0242 REMARK 3 T33: 0.0604 T12: 0.0029 REMARK 3 T13: 0.0106 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.8623 L22: 0.8110 REMARK 3 L33: 2.0952 L12: -0.8229 REMARK 3 L13: 2.0108 L23: -0.4500 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.0573 S13: -0.0273 REMARK 3 S21: 0.0982 S22: -0.0364 S23: 0.1236 REMARK 3 S31: -0.0674 S32: -0.0250 S33: 0.0114 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 240 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1255 24.2960 -7.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.0099 REMARK 3 T33: 0.0379 T12: 0.0214 REMARK 3 T13: -0.0200 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.3685 L22: 1.3778 REMARK 3 L33: 6.0358 L12: -0.3071 REMARK 3 L13: -1.9653 L23: 1.3163 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: -0.0577 S13: -0.0242 REMARK 3 S21: -0.2896 S22: -0.0645 S23: -0.0055 REMARK 3 S31: -0.5602 S32: -0.0301 S33: -0.0497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6FR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 47.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EH6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4K, 20% 2-PROPANOL, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.74500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 149 O HOH B 401 2.05 REMARK 500 O HOH B 537 O HOH B 594 2.08 REMARK 500 O PRO A 112 O2 EDO A 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 185 CB SER B 185 OG -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 160 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 50 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 VAL B 51 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 106 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP B 222 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 -116.59 -114.67 REMARK 500 THR A 72 54.72 35.21 REMARK 500 PHE A 74 65.86 -152.06 REMARK 500 ASP A 97 19.74 55.77 REMARK 500 ASP A 118 59.04 -147.81 REMARK 500 ASP A 131 56.65 -95.54 REMARK 500 PRO B 148 -165.73 -79.02 REMARK 500 HIS B 150 80.43 -152.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 DBREF 6FR9 A 1 202 PDB 6FR9 6FR9 1 202 DBREF 6FR9 B 1 240 PDB 6FR9 6FR9 1 240 SEQRES 1 A 202 ALA GLN SER VAL THR GLN LEU GLY SER HIS VAL SER VAL SEQRES 2 A 202 SER GLU GLY ALA LEU VAL LEU LEU ARG CYS ASN TYR SER SEQRES 3 A 202 SER SER VAL PRO PRO TYR LEU PHE TRP TYR VAL GLN TYR SEQRES 4 A 202 PRO ASN GLN GLY LEU GLN LEU LEU LEU LYS TYR THR SER SEQRES 5 A 202 ALA ALA THR LEU VAL LYS GLY ILE ASN GLY PHE GLU ALA SEQRES 6 A 202 GLU PHE LYS LYS SER GLU THR SER PHE HIS LEU THR LYS SEQRES 7 A 202 PRO SER ALA HIS MET SER ASP ALA ALA GLU TYR PHE CYS SEQRES 8 A 202 ALA VAL SER GLU GLN ASP ASP LYS ILE ILE PHE GLY LYS SEQRES 9 A 202 GLY THR ARG LEU HIS ILE LEU PRO ASN ILE GLN ASN PRO SEQRES 10 A 202 ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER SEQRES 11 A 202 ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN SEQRES 12 A 202 THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE SEQRES 13 A 202 THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE SEQRES 14 A 202 LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP SEQRES 15 A 202 PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO SEQRES 16 A 202 GLU ASP THR PHE PHE PRO SER SEQRES 1 B 240 ALA ASP VAL THR GLN THR PRO ARG ASN ARG ILE THR LYS SEQRES 2 B 240 THR GLY LYS ARG ILE MET LEU GLU CYS SER GLN THR LYS SEQRES 3 B 240 GLY HIS ASP ARG MET TYR TRP TYR ARG GLN ASP PRO GLY SEQRES 4 B 240 LEU GLY LEU ARG LEU ILE TYR TYR SER PHE ASP VAL LYS SEQRES 5 B 240 ASP ILE ASN LYS GLY GLU ILE SER ASP GLY TYR SER VAL SEQRES 6 B 240 SER ARG GLN ALA GLN ALA LYS PHE SER LEU SER LEU GLU SEQRES 7 B 240 SER ALA ILE PRO ASN GLN THR ALA LEU TYR PHE CYS ALA SEQRES 8 B 240 THR SER ASP GLU SER TYR GLY TYR THR PHE GLY SER GLY SEQRES 9 B 240 THR ARG LEU THR VAL VAL GLU ASP LEU ASN LYS VAL SER SEQRES 10 B 240 PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU SEQRES 11 B 240 ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA SEQRES 12 B 240 THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP SEQRES 13 B 240 VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP SEQRES 14 B 240 PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER SEQRES 15 B 240 ARG TYR SER LEU SER SER ARG LEU ARG VAL SER ALA THR SEQRES 16 B 240 PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL SEQRES 17 B 240 GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN SEQRES 18 B 240 ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU SEQRES 19 B 240 ALA TRP GLY ARG ALA ASP HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET GOL B 304 6 HET SO4 B 305 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 GOL C3 H8 O3 FORMUL 12 SO4 O4 S 2- FORMUL 13 HOH *427(H2 O) HELIX 1 AA1 ILE A 60 GLY A 62 5 3 HELIX 2 AA2 LYS A 69 THR A 72 5 4 HELIX 3 AA3 HIS A 82 ALA A 86 5 5 HELIX 4 AA4 ARG A 165 ASP A 168 5 4 HELIX 5 AA5 ALA A 184 PHE A 189 1 6 HELIX 6 AA6 ILE B 81 THR B 85 5 5 HELIX 7 AA7 ASP B 112 VAL B 116 5 5 HELIX 8 AA8 SER B 127 GLN B 135 1 9 HELIX 9 AA9 ALA B 194 GLN B 198 1 5 SHEET 1 AA1 2 VAL A 4 THR A 5 0 SHEET 2 AA1 2 ASN A 24 TYR A 25 -1 O ASN A 24 N THR A 5 SHEET 1 AA2 5 HIS A 10 SER A 14 0 SHEET 2 AA2 5 THR A 106 LEU A 111 1 O LEU A 111 N VAL A 13 SHEET 3 AA2 5 ALA A 87 GLU A 95 -1 N TYR A 89 O THR A 106 SHEET 4 AA2 5 LEU A 33 GLN A 38 -1 N TYR A 36 O PHE A 90 SHEET 5 AA2 5 LEU A 44 TYR A 50 -1 O LEU A 47 N TRP A 35 SHEET 1 AA3 4 HIS A 10 SER A 14 0 SHEET 2 AA3 4 THR A 106 LEU A 111 1 O LEU A 111 N VAL A 13 SHEET 3 AA3 4 ALA A 87 GLU A 95 -1 N TYR A 89 O THR A 106 SHEET 4 AA3 4 LYS A 99 PHE A 102 -1 O ILE A 101 N VAL A 93 SHEET 1 AA4 4 VAL A 19 LEU A 21 0 SHEET 2 AA4 4 SER A 73 LYS A 78 -1 O LEU A 76 N LEU A 21 SHEET 3 AA4 4 GLU A 64 LYS A 68 -1 N GLU A 64 O THR A 77 SHEET 4 AA4 4 LEU A 56 LYS A 58 -1 N VAL A 57 O ALA A 65 SHEET 1 AA5 8 VAL A 154 ILE A 156 0 SHEET 2 AA5 8 PHE A 169 SER A 178 -1 O TRP A 177 N TYR A 155 SHEET 3 AA5 8 SER A 133 THR A 138 -1 N CYS A 135 O ALA A 176 SHEET 4 AA5 8 ALA A 120 ASP A 126 -1 N TYR A 122 O LEU A 136 SHEET 5 AA5 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 125 SHEET 6 AA5 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 AA5 8 TYR B 184 SER B 193 -1 O LEU B 190 N LEU B 139 SHEET 8 AA5 8 VAL B 166 THR B 168 -1 N CYS B 167 O ARG B 189 SHEET 1 AA6 8 CYS A 160 MET A 164 0 SHEET 2 AA6 8 PHE A 169 SER A 178 -1 O PHE A 169 N MET A 164 SHEET 3 AA6 8 SER A 133 THR A 138 -1 N CYS A 135 O ALA A 176 SHEET 4 AA6 8 ALA A 120 ASP A 126 -1 N TYR A 122 O LEU A 136 SHEET 5 AA6 8 GLU B 120 GLU B 125 -1 O GLU B 125 N ARG A 125 SHEET 6 AA6 8 LYS B 136 PHE B 146 -1 O VAL B 140 N PHE B 124 SHEET 7 AA6 8 TYR B 184 SER B 193 -1 O LEU B 190 N LEU B 139 SHEET 8 AA6 8 LEU B 173 LYS B 174 -1 N LEU B 173 O SER B 185 SHEET 1 AA7 4 THR B 4 THR B 6 0 SHEET 2 AA7 4 ILE B 18 SER B 23 -1 O SER B 23 N THR B 4 SHEET 3 AA7 4 LYS B 72 LEU B 77 -1 O LEU B 75 N LEU B 20 SHEET 4 AA7 4 TYR B 63 ALA B 69 -1 N SER B 64 O SER B 76 SHEET 1 AA8 6 ASN B 9 LYS B 13 0 SHEET 2 AA8 6 THR B 105 VAL B 110 1 O VAL B 110 N THR B 12 SHEET 3 AA8 6 ALA B 86 SER B 93 -1 N TYR B 88 O THR B 105 SHEET 4 AA8 6 ARG B 30 ASP B 37 -1 N GLN B 36 O LEU B 87 SHEET 5 AA8 6 GLY B 41 ASP B 50 -1 O ILE B 45 N TRP B 33 SHEET 6 AA8 6 ASP B 53 LYS B 56 -1 O ASN B 55 N TYR B 47 SHEET 1 AA9 4 ASN B 9 LYS B 13 0 SHEET 2 AA9 4 THR B 105 VAL B 110 1 O VAL B 110 N THR B 12 SHEET 3 AA9 4 ALA B 86 SER B 93 -1 N TYR B 88 O THR B 105 SHEET 4 AA9 4 TYR B 99 PHE B 101 -1 O THR B 100 N THR B 92 SHEET 1 AB1 4 LYS B 160 VAL B 162 0 SHEET 2 AB1 4 VAL B 151 VAL B 157 -1 N VAL B 157 O LYS B 160 SHEET 3 AB1 4 HIS B 203 PHE B 210 -1 O GLN B 207 N SER B 154 SHEET 4 AB1 4 GLN B 229 TRP B 236 -1 O ALA B 235 N PHE B 204 SSBOND 1 CYS A 23 CYS A 91 1555 1555 2.04 SSBOND 2 CYS A 135 CYS A 185 1555 1555 2.06 SSBOND 3 CYS A 160 CYS B 167 1555 1555 2.00 SSBOND 4 CYS B 22 CYS B 90 1555 1555 2.17 SSBOND 5 CYS B 141 CYS B 206 1555 1555 1.94 CISPEP 1 THR B 6 PRO B 7 0 -14.83 CISPEP 2 TYR B 147 PRO B 148 0 -0.18 SITE 1 AC1 7 SER A 147 ILE A 156 ALA A 188 PHE A 189 SITE 2 AC1 7 ASN A 190 ASN A 191 SER A 192 SITE 1 AC2 5 LYS A 132 SER A 133 TRP A 177 HOH A 440 SITE 2 AC2 5 HOH A 459 SITE 1 AC3 9 LEU A 111 PRO A 112 SER A 142 LYS A 159 SITE 2 AC3 9 ASN A 172 HOH A 425 HOH A 441 HOH A 482 SITE 3 AC3 9 HOH A 525 SITE 1 AC4 7 HIS A 109 LYS A 159 ILE A 193 HOH A 409 SITE 2 AC4 7 HOH A 431 HOH A 531 HOH A 585 SITE 1 AC5 6 SER A 14 GLU A 15 LEU A 111 PRO A 112 SITE 2 AC5 6 ASN A 113 GLN A 143 SITE 1 AC6 7 ILE B 11 THR B 12 LYS B 13 LEU B 113 SITE 2 AC6 7 ASP B 217 HOH B 443 HOH B 506 SITE 1 AC7 5 TRP B 219 GLN B 221 ASP B 222 ARG B 223 SITE 2 AC7 5 HOH B 409 SITE 1 AC8 3 TRP B 156 LYS B 160 GLU B 161 SITE 1 AC9 10 VAL B 151 GLU B 152 LEU B 153 ASP B 169 SITE 2 AC9 10 PRO B 172 LEU B 186 HOH B 401 HOH B 433 SITE 3 AC9 10 HOH B 460 HOH B 570 SITE 1 AD1 6 THR B 85 ALA B 86 ARG B 106 LEU B 107 SITE 2 AD1 6 HOH B 406 HOH B 593 CRYST1 85.490 115.360 50.860 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019662 0.00000