HEADER METAL BINDING PROTEIN 20-DEC-18 6NFQ TITLE COPC FROM PSEUDOMONAS FLUORESCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPC; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COPC, METALLOCHAPERONE, COPPER BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MAHER REVDAT 3 11-OCT-23 6NFQ 1 LINK REVDAT 2 01-JAN-20 6NFQ 1 REMARK REVDAT 1 24-APR-19 6NFQ 0 JRNL AUTH S.R.UDAGEDARA,C.J.K.WIJEKOON,Z.XIAO,A.G.WEDD,M.J.MAHER JRNL TITL THE CRYSTAL STRUCTURE OF THE COPC PROTEIN FROM PSEUDOMONAS JRNL TITL 2 FLUORESCENS REVEALS AMENDED CLASSIFICATIONS FOR THE COPC JRNL TITL 3 PROTEIN FAMILY. JRNL REF J. INORG. BIOCHEM. V. 195 194 2019 JRNL REFN ISSN 1873-3344 JRNL PMID 30981030 JRNL DOI 10.1016/J.JINORGBIO.2019.03.007 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1659 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 31.11000 REMARK 3 B22 (A**2) : -11.18000 REMARK 3 B33 (A**2) : -19.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.725 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2164 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2029 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2950 ; 1.367 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4729 ; 0.869 ; 1.654 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 7.167 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;39.526 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;16.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;20.394 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2393 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 2.978 ; 3.783 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1152 ; 2.963 ; 3.781 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1436 ; 3.854 ; 5.662 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1437 ; 3.853 ; 5.664 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1010 ; 3.661 ; 4.160 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1011 ; 3.660 ; 4.162 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1513 ; 5.402 ; 6.067 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2179 ; 6.587 ;45.047 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2172 ; 6.585 ;45.018 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 5.8.0230 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2C9Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 6.7, 2 MM YTTRIUM CHLORIDE HEXAHYDRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.11100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.11100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.86500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.65950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.86500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.65950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.11100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.86500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.65950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.11100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.86500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.65950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 Y YT3 A 202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 ALA A 24 REMARK 465 LYS A 121 REMARK 465 LYS A 122 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 ILE B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 VAL B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 LEU B 16 REMARK 465 LEU B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 PHE B 23 REMARK 465 ALA B 24 REMARK 465 LYS B 122 REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 ILE C 3 REMARK 465 LYS C 4 REMARK 465 LYS C 5 REMARK 465 ALA C 6 REMARK 465 LEU C 7 REMARK 465 THR C 8 REMARK 465 ALA C 9 REMARK 465 VAL C 10 REMARK 465 ALA C 11 REMARK 465 LEU C 12 REMARK 465 LEU C 13 REMARK 465 ALA C 14 REMARK 465 SER C 15 REMARK 465 LEU C 16 REMARK 465 LEU C 17 REMARK 465 GLY C 18 REMARK 465 ALA C 19 REMARK 465 SER C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 PHE C 23 REMARK 465 ALA C 24 REMARK 465 LYS C 121 REMARK 465 LYS C 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS C 120 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 306 O HOH C 306 3555 0.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 108 -19.11 82.51 REMARK 500 THR B 108 -18.84 95.01 REMARK 500 THR C 108 -8.95 91.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 46 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 N REMARK 620 2 HIS A 25 ND1 92.4 REMARK 620 3 ASP A 107 OD2 68.8 161.2 REMARK 620 4 HIS A 109 ND1 147.9 110.3 87.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 A 202 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 68 OE1 REMARK 620 2 GLU A 68 OE2 53.8 REMARK 620 3 GLU A 68 OE1 0.0 53.8 REMARK 620 4 GLU A 68 OE2 53.8 0.0 53.8 REMARK 620 5 HOH A 312 O 75.5 113.5 75.5 113.5 REMARK 620 6 HOH A 312 O 136.1 85.6 136.1 85.6 144.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 25 N REMARK 620 2 HIS B 25 ND1 88.5 REMARK 620 3 ASP B 107 OD2 93.9 168.6 REMARK 620 4 HIS B 109 ND1 158.5 108.2 72.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 25 N REMARK 620 2 HIS C 25 ND1 91.5 REMARK 620 3 ASP C 107 OD2 83.5 171.8 REMARK 620 4 HIS C 109 ND1 146.2 115.7 66.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU C 201 DBREF 6NFQ A 1 122 PDB 6NFQ 6NFQ 1 122 DBREF 6NFQ B 1 122 PDB 6NFQ 6NFQ 1 122 DBREF 6NFQ C 1 122 PDB 6NFQ 6NFQ 1 122 SEQRES 1 A 122 MET LEU ILE LYS LYS ALA LEU THR ALA VAL ALA LEU LEU SEQRES 2 A 122 ALA SER LEU LEU GLY ALA SER ALA ALA PHE ALA HIS ALA SEQRES 3 A 122 HIS LEU LYS SER ALA THR PRO ALA ALA ASP SER THR VAL SEQRES 4 A 122 ALA ALA PRO ALA ASP LEU ARG LEU THR PHE SER GLU GLY SEQRES 5 A 122 VAL GLU ALA THR PHE THR LYS VAL SER LEU SER LYS ASP SEQRES 6 A 122 GLY THR GLU VAL ALA ILE LYS GLY LEU GLU THR PRO ASP SEQRES 7 A 122 ALA ASP LYS LYS THR LEU VAL VAL THR PRO ALA ALA PRO SEQRES 8 A 122 LEU ALA ALA GLY ASN TYR LYS VAL VAL TRP ASN ALA VAL SEQRES 9 A 122 SER VAL ASP THR HIS LYS SER ASN GLY GLU TYR SER PHE SEQRES 10 A 122 LYS VAL LYS LYS LYS SEQRES 1 B 122 MET LEU ILE LYS LYS ALA LEU THR ALA VAL ALA LEU LEU SEQRES 2 B 122 ALA SER LEU LEU GLY ALA SER ALA ALA PHE ALA HIS ALA SEQRES 3 B 122 HIS LEU LYS SER ALA THR PRO ALA ALA ASP SER THR VAL SEQRES 4 B 122 ALA ALA PRO ALA ASP LEU ARG LEU THR PHE SER GLU GLY SEQRES 5 B 122 VAL GLU ALA THR PHE THR LYS VAL SER LEU SER LYS ASP SEQRES 6 B 122 GLY THR GLU VAL ALA ILE LYS GLY LEU GLU THR PRO ASP SEQRES 7 B 122 ALA ASP LYS LYS THR LEU VAL VAL THR PRO ALA ALA PRO SEQRES 8 B 122 LEU ALA ALA GLY ASN TYR LYS VAL VAL TRP ASN ALA VAL SEQRES 9 B 122 SER VAL ASP THR HIS LYS SER ASN GLY GLU TYR SER PHE SEQRES 10 B 122 LYS VAL LYS LYS LYS SEQRES 1 C 122 MET LEU ILE LYS LYS ALA LEU THR ALA VAL ALA LEU LEU SEQRES 2 C 122 ALA SER LEU LEU GLY ALA SER ALA ALA PHE ALA HIS ALA SEQRES 3 C 122 HIS LEU LYS SER ALA THR PRO ALA ALA ASP SER THR VAL SEQRES 4 C 122 ALA ALA PRO ALA ASP LEU ARG LEU THR PHE SER GLU GLY SEQRES 5 C 122 VAL GLU ALA THR PHE THR LYS VAL SER LEU SER LYS ASP SEQRES 6 C 122 GLY THR GLU VAL ALA ILE LYS GLY LEU GLU THR PRO ASP SEQRES 7 C 122 ALA ASP LYS LYS THR LEU VAL VAL THR PRO ALA ALA PRO SEQRES 8 C 122 LEU ALA ALA GLY ASN TYR LYS VAL VAL TRP ASN ALA VAL SEQRES 9 C 122 SER VAL ASP THR HIS LYS SER ASN GLY GLU TYR SER PHE SEQRES 10 C 122 LYS VAL LYS LYS LYS HET CU A 201 1 HET YT3 A 202 1 HET CU B 201 1 HET CU C 201 1 HETNAM CU COPPER (II) ION HETNAM YT3 YTTRIUM (III) ION FORMUL 4 CU 3(CU 2+) FORMUL 5 YT3 Y 3+ FORMUL 8 HOH *96(H2 O) SHEET 1 AA1 8 LEU A 28 THR A 32 0 SHEET 2 AA1 8 LEU A 45 PHE A 49 -1 O THR A 48 N SER A 30 SHEET 3 AA1 8 THR A 83 PRO A 88 -1 O VAL A 86 N LEU A 45 SHEET 4 AA1 8 ILE A 71 GLU A 75 -1 N GLU A 75 O VAL A 85 SHEET 5 AA1 8 ILE B 71 GLU B 75 -1 O LEU B 74 N LEU A 74 SHEET 6 AA1 8 THR B 83 PRO B 88 -1 O VAL B 85 N GLU B 75 SHEET 7 AA1 8 LEU B 45 PHE B 49 -1 N LEU B 47 O LEU B 84 SHEET 8 AA1 8 LEU B 28 THR B 32 -1 N SER B 30 O THR B 48 SHEET 1 AA2 5 THR A 38 VAL A 39 0 SHEET 2 AA2 5 LYS A 110 VAL A 119 1 O LYS A 118 N VAL A 39 SHEET 3 AA2 5 GLY A 95 VAL A 104 -1 N TYR A 97 O PHE A 117 SHEET 4 AA2 5 LYS A 59 LYS A 64 -1 N SER A 61 O VAL A 100 SHEET 5 AA2 5 THR A 67 VAL A 69 -1 O THR A 67 N LYS A 64 SHEET 1 AA3 5 THR B 38 VAL B 39 0 SHEET 2 AA3 5 LYS B 110 VAL B 119 1 O LYS B 118 N VAL B 39 SHEET 3 AA3 5 GLY B 95 VAL B 104 -1 N VAL B 99 O TYR B 115 SHEET 4 AA3 5 LYS B 59 LYS B 64 -1 N SER B 61 O VAL B 100 SHEET 5 AA3 5 THR B 67 GLU B 68 -1 O THR B 67 N LYS B 64 SHEET 1 AA4 4 LEU C 28 THR C 32 0 SHEET 2 AA4 4 LEU C 45 PHE C 49 -1 O THR C 48 N SER C 30 SHEET 3 AA4 4 THR C 83 PRO C 88 -1 O VAL C 86 N LEU C 45 SHEET 4 AA4 4 ILE C 71 GLU C 75 -1 N GLU C 75 O VAL C 85 SHEET 1 AA5 5 THR C 38 VAL C 39 0 SHEET 2 AA5 5 LYS C 110 VAL C 119 1 O LYS C 118 N VAL C 39 SHEET 3 AA5 5 GLY C 95 VAL C 104 -1 N VAL C 99 O TYR C 115 SHEET 4 AA5 5 LYS C 59 LYS C 64 -1 N SER C 61 O VAL C 100 SHEET 5 AA5 5 THR C 67 GLU C 68 -1 O THR C 67 N LYS C 64 LINK N HIS A 25 CU CU A 201 1555 1555 2.17 LINK ND1 HIS A 25 CU CU A 201 1555 1555 2.32 LINK OE1 GLU A 68 Y YT3 A 202 1555 1555 2.40 LINK OE2 GLU A 68 Y YT3 A 202 1555 1555 2.42 LINK OE1 GLU A 68 Y YT3 A 202 1555 3555 2.40 LINK OE2 GLU A 68 Y YT3 A 202 1555 3555 2.42 LINK OD2 ASP A 107 CU CU A 201 1555 1555 2.62 LINK ND1 HIS A 109 CU CU A 201 1555 1555 1.83 LINK Y YT3 A 202 O HOH A 312 1555 1555 2.17 LINK Y YT3 A 202 O HOH A 312 1555 3555 2.17 LINK N HIS B 25 CU CU B 201 1555 1555 2.15 LINK ND1 HIS B 25 CU CU B 201 1555 1555 2.31 LINK OD2 ASP B 107 CU CU B 201 1555 1555 2.08 LINK ND1 HIS B 109 CU CU B 201 1555 1555 2.06 LINK N HIS C 25 CU CU C 201 1555 1555 2.25 LINK ND1 HIS C 25 CU CU C 201 1555 1555 1.91 LINK OD2 ASP C 107 CU CU C 201 1555 1555 2.37 LINK ND1 HIS C 109 CU CU C 201 1555 1555 2.29 CISPEP 1 THR A 32 PRO A 33 0 -15.29 CISPEP 2 THR B 32 PRO B 33 0 5.05 CISPEP 3 THR C 32 PRO C 33 0 -5.56 SITE 1 AC1 3 HIS A 25 ASP A 107 HIS A 109 SITE 1 AC2 2 GLU A 68 HOH A 312 SITE 1 AC3 3 HIS B 25 ASP B 107 HIS B 109 SITE 1 AC4 3 HIS C 25 ASP C 107 HIS C 109 CRYST1 77.730 111.319 82.222 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012865 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012162 0.00000