HEADER TRANSFERASE 17-FEB-20 6Y2U TITLE CRYSTAL STRUCTURE OF THE CAMP-DEPENDENT PROTEIN KINASE A TITLE 2 COCRYSTALLIZED WITH AMINOFASUDIL AND PKI (5-24) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 11 MUSCLE/BRAIN ISOFORM; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS PHOSPHOTRANSFERASE, SIGNALLING PATHWAYS, GLYCOGEN METABOLISM, KEYWDS 2 SERINE/THREONINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.OEBBEKE,H.-D.GERBER,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6Y2U 1 REMARK REVDAT 1 31-MAR-21 6Y2U 0 JRNL AUTH M.OEBBEKE,B.WIENEN-SCHMIDT,H.-D.GERBER,A.HEINE,G.KLEBE JRNL TITL FRAGMENT BASED DRUG DESIGN - SMALL CHEMICAL CHANGES OF JRNL TITL 2 FRAGMENTS EFFECTING BIG CHANGES IN BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.4100 - 3.5000 1.00 2802 148 0.1638 0.2002 REMARK 3 2 3.5000 - 3.0600 1.00 2786 147 0.1848 0.2480 REMARK 3 3 3.0600 - 2.7800 1.00 2765 145 0.1923 0.2318 REMARK 3 4 2.7800 - 2.5800 1.00 2743 144 0.1908 0.2265 REMARK 3 5 2.5800 - 2.4300 1.00 2747 145 0.1872 0.2477 REMARK 3 6 2.4300 - 2.3100 1.00 2727 144 0.1786 0.2200 REMARK 3 7 2.3100 - 2.2100 1.00 2734 143 0.1769 0.2570 REMARK 3 8 2.2100 - 2.1200 1.00 2715 143 0.1924 0.2308 REMARK 3 9 2.1200 - 2.0500 1.00 2714 143 0.1990 0.2476 REMARK 3 10 2.0500 - 1.9800 1.00 2721 143 0.2114 0.2554 REMARK 3 11 1.9800 - 1.9300 0.98 2660 141 0.2392 0.2855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.205 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2983 REMARK 3 ANGLE : 0.778 4066 REMARK 3 CHIRALITY : 0.053 440 REMARK 3 PLANARITY : 0.005 548 REMARK 3 DIHEDRAL : 15.095 1757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7533 -8.2251 -0.8390 REMARK 3 T TENSOR REMARK 3 T11: 0.3722 T22: 0.4224 REMARK 3 T33: 0.4007 T12: -0.0910 REMARK 3 T13: -0.0328 T23: 0.0761 REMARK 3 L TENSOR REMARK 3 L11: 0.8682 L22: 0.2723 REMARK 3 L33: 0.3894 L12: -0.1437 REMARK 3 L13: 0.3724 L23: 0.1821 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: -0.4786 S13: 0.0815 REMARK 3 S21: 0.1440 S22: -0.0103 S23: 0.1771 REMARK 3 S31: -0.2306 S32: 0.1148 S33: -0.0366 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7526 -16.1004 -28.5559 REMARK 3 T TENSOR REMARK 3 T11: 0.3009 T22: 0.4299 REMARK 3 T33: 0.3759 T12: 0.0117 REMARK 3 T13: 0.0900 T23: 0.1147 REMARK 3 L TENSOR REMARK 3 L11: 0.1857 L22: 2.0637 REMARK 3 L33: 0.5197 L12: 0.5914 REMARK 3 L13: 0.1134 L23: 0.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.0259 S13: -0.1127 REMARK 3 S21: -0.5738 S22: -0.1414 S23: -0.6139 REMARK 3 S31: 0.1447 S32: 0.4774 S33: -0.0820 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7105 -23.8284 -17.4952 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2630 REMARK 3 T33: 0.2505 T12: -0.0170 REMARK 3 T13: 0.0282 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.6092 L22: 0.9253 REMARK 3 L33: 0.1534 L12: 0.2058 REMARK 3 L13: 0.2679 L23: -0.0889 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: -0.1921 S13: -0.3506 REMARK 3 S21: -0.0640 S22: -0.2158 S23: -0.2854 REMARK 3 S31: 0.1032 S32: 0.2581 S33: -0.0179 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6549 -14.7001 -21.8366 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1775 REMARK 3 T33: 0.2460 T12: 0.0087 REMARK 3 T13: -0.0052 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.5101 L22: 1.8202 REMARK 3 L33: 0.9338 L12: 0.7337 REMARK 3 L13: -0.0983 L23: -0.1028 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: -0.1056 S13: 0.1221 REMARK 3 S21: -0.1190 S22: -0.2169 S23: 0.2061 REMARK 3 S31: -0.0344 S32: 0.0635 S33: -0.0819 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1998 -22.3377 -11.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.3318 REMARK 3 T33: 0.1867 T12: -0.0923 REMARK 3 T13: 0.0281 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.4648 L22: 1.9136 REMARK 3 L33: 0.9631 L12: 0.6023 REMARK 3 L13: -0.2598 L23: -0.1398 REMARK 3 S TENSOR REMARK 3 S11: 0.1947 S12: -0.5913 S13: -0.1346 REMARK 3 S21: 0.2330 S22: -0.3407 S23: 0.0513 REMARK 3 S31: 0.0680 S32: 0.1300 S33: -0.7132 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4258 -9.9016 -39.3958 REMARK 3 T TENSOR REMARK 3 T11: 0.7052 T22: 0.6261 REMARK 3 T33: 0.5175 T12: -0.0871 REMARK 3 T13: 0.2475 T23: 0.1192 REMARK 3 L TENSOR REMARK 3 L11: 0.8360 L22: 0.0980 REMARK 3 L33: 0.5425 L12: -0.1458 REMARK 3 L13: -0.1165 L23: 0.2170 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: 0.4886 S13: 0.2810 REMARK 3 S21: -0.8911 S22: 0.0164 S23: -0.3767 REMARK 3 S31: 0.0110 S32: 0.2162 S33: -0.5586 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3244 -30.9150 -27.8371 REMARK 3 T TENSOR REMARK 3 T11: 0.3952 T22: 0.3230 REMARK 3 T33: 0.3495 T12: -0.0228 REMARK 3 T13: -0.0681 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 0.0150 L22: 0.0152 REMARK 3 L33: 0.0256 L12: -0.0037 REMARK 3 L13: 0.0131 L23: 0.0110 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0256 S13: -0.0895 REMARK 3 S21: -0.3915 S22: 0.3042 S23: 0.3942 REMARK 3 S31: 0.0340 S32: -0.2267 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9494 -23.3784 -31.5055 REMARK 3 T TENSOR REMARK 3 T11: 0.4614 T22: 0.1781 REMARK 3 T33: 0.2508 T12: 0.0418 REMARK 3 T13: 0.0099 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: 0.0454 REMARK 3 L33: 0.0515 L12: -0.0186 REMARK 3 L13: -0.0219 L23: 0.0490 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: 0.2947 S13: 0.0035 REMARK 3 S21: -0.4750 S22: -0.1320 S23: -0.0650 REMARK 3 S31: 0.0097 S32: -0.1129 S33: -0.0367 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34803 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.927 REMARK 200 RESOLUTION RANGE LOW (A) : 45.274 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F14 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES-BIS-TRIS-BUFFER, 1 MM REMARK 280 DITHIOTHREITOL, 0.1 MM SODIUM EDTA, 75 MM LICL, 0.2 MEGA8, 5 MM REMARK 280 AMINOFASUDIL (IN DMSO), 0.5 MM PKI (5-24) AND 18-23 % METHANOL REMARK 280 (V/V)0.004 ML DROP VOLUME, 0.5 ML RESERVOIR VOLUME, PH 6.9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.35300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.98800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.55950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.98800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.35300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.55950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 23 REMARK 465 ASP B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 8 CD CE NZ REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 PHE A 18 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 21 NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 25 OE1 OE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 SER A 32 OG REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 ASN A 36 OD1 ND2 REMARK 470 ASP A 41 OD1 OD2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 THR A 51 OG1 CG2 REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 56 NH1 NH2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 THR A 65 OG1 CG2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LEU A 82 CD1 CD2 REMARK 470 LYS A 83 NZ REMARK 470 GLN A 84 OE1 NE2 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 LYS A 192 NZ REMARK 470 LYS A 213 CE NZ REMARK 470 LYS A 217 CD CE NZ REMARK 470 ASP A 241 CG OD1 OD2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 GLN A 245 CG CD OE1 NE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CG1 CG2 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 470 ASN A 340 CG OD1 ND2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 ILE B 22 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 38 -176.92 -175.57 REMARK 500 LEU A 273 47.46 -84.37 REMARK 500 ARG B 15 48.41 -105.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LRT A 401 DBREF 6Y2U A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 6Y2U B 5 24 UNP P63248 IPKA_MOUSE 6 25 SEQADV 6Y2U GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 6Y2U HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SER GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 B 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 B 20 ARG ARG ASN ALA ILE HIS ASP MODRES 6Y2U SEP A 10 SER MODIFIED RESIDUE MODRES 6Y2U TPO A 197 THR MODIFIED RESIDUE MODRES 6Y2U SEP A 338 SER MODIFIED RESIDUE HET SEP A 10 10 HET TPO A 197 11 HET SEP A 338 10 HET LRT A 401 42 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM LRT 5-(1,4-DIAZEPAN-1-YLSULFONYL)ISOQUINOLIN-1-AMINE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 LRT C14 H18 N4 O2 S FORMUL 4 HOH *159(H2 O) HELIX 1 AA1 GLY A 1 SER A 32 1 32 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SER A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 ASP A 276 ARG A 280 5 5 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 HELIX 17 AB8 GLY A 344 THR A 348 5 5 HELIX 18 AB9 THR B 6 SER B 13 1 8 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O ILE A 73 N ARG A 56 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C GLY A 9 N SEP A 10 1555 1555 1.33 LINK C SEP A 10 N GLU A 11 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 14 LEU A 49 GLY A 50 VAL A 57 ALA A 70 SITE 2 AC1 14 VAL A 104 GLU A 121 VAL A 123 GLU A 127 SITE 3 AC1 14 GLU A 170 ASN A 171 LEU A 173 THR A 183 SITE 4 AC1 14 ASP A 184 PHE A 327 CRYST1 58.706 71.119 107.976 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017034 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009261 0.00000