HEADER TRANSCRIPTION/INHIBITOR 03-JAN-21 7L9A
TITLE CRYSTAL STRUCTURE OF BRDT BROMODOMAIN 2 IN COMPLEX WITH CDD-1102
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BROMODOMAIN TESTIS-SPECIFIC PROTEIN;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: BROMODOMAIN 2;
COMPND 5 SYNONYM: CANCER/TESTIS ANTIGEN 9,CT9,RING3-LIKE PROTEIN;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: CDD
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BRDT;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA
KEYWDS TRANSCRIPTION/INHIBITOR, TRANSCRIPTION-INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR R.SHARMA,G.KAUR,Z.YU,A.F.KU,J.L.ANGLIN,M.N.UCISIK,J.C.FAVER,
AUTHOR 2 B.SANKARAN,C.KIM,M.M.MATZUK
REVDAT 2 18-OCT-23 7L9A 1 REMARK
REVDAT 1 30-JUN-21 7L9A 0
JRNL AUTH Z.YU,A.F.KU,J.L.ANGLIN,R.SHARMA,M.N.UCISIK,J.C.FAVER,F.LI,
JRNL AUTH 2 P.NYSHADHAM,N.SIMMONS,K.L.SHARMA,S.NAGARAJAN,K.RIEHLE,
JRNL AUTH 3 G.KAUR,B.SANKARAN,M.STORL-DESMOND,S.S.PALMER,D.W.YOUNG,
JRNL AUTH 4 C.KIM,M.M.MATZUK
JRNL TITL DISCOVERY AND CHARACTERIZATION OF BROMODOMAIN 2-SPECIFIC
JRNL TITL 2 INHIBITORS OF BRDT.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021
JRNL REFN ESSN 1091-6490
JRNL PMID 33637650
JRNL DOI 10.1073/PNAS.2021102118
REMARK 2
REMARK 2 RESOLUTION. 2.27 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.90
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 17166
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.237
REMARK 3 R VALUE (WORKING SET) : 0.235
REMARK 3 FREE R VALUE : 0.265
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170
REMARK 3 FREE R VALUE TEST SET COUNT : 888
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 48.9000 - 4.1200 1.00 2902 151 0.2170 0.2348
REMARK 3 2 4.1200 - 3.2700 1.00 2747 130 0.2068 0.2433
REMARK 3 3 3.2700 - 2.8600 1.00 2713 136 0.2514 0.2915
REMARK 3 4 2.8600 - 2.6000 1.00 2655 152 0.2771 0.3212
REMARK 3 5 2.6000 - 2.4100 1.00 2654 157 0.2807 0.3130
REMARK 3 6 2.4100 - 2.2700 1.00 2607 162 0.3213 0.3226
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.288
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.291
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 44.34
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.006 2011
REMARK 3 ANGLE : 0.827 2735
REMARK 3 CHIRALITY : 0.046 276
REMARK 3 PLANARITY : 0.005 351
REMARK 3 DIHEDRAL : 10.358 265
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 12
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 282 )
REMARK 3 ORIGIN FOR THE GROUP (A): 17.8254 -11.3479 -36.1277
REMARK 3 T TENSOR
REMARK 3 T11: 0.4145 T22: 0.6534
REMARK 3 T33: 0.3766 T12: -0.1216
REMARK 3 T13: -0.0146 T23: 0.0552
REMARK 3 L TENSOR
REMARK 3 L11: 4.4011 L22: 8.9065
REMARK 3 L33: 8.7916 L12: 5.3478
REMARK 3 L13: 3.6452 L23: 4.9743
REMARK 3 S TENSOR
REMARK 3 S11: -0.5665 S12: 0.6012 S13: 0.1159
REMARK 3 S21: -0.7434 S22: 0.3790 S23: 0.2229
REMARK 3 S31: -0.2814 S32: 0.2959 S33: 0.2075
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 307 )
REMARK 3 ORIGIN FOR THE GROUP (A): 32.2961 -1.0559 -18.5941
REMARK 3 T TENSOR
REMARK 3 T11: 0.4993 T22: 0.4581
REMARK 3 T33: 0.3755 T12: -0.2480
REMARK 3 T13: -0.0414 T23: 0.0244
REMARK 3 L TENSOR
REMARK 3 L11: 1.7706 L22: 1.9598
REMARK 3 L33: 7.6044 L12: 1.8191
REMARK 3 L13: 0.7223 L23: 0.7562
REMARK 3 S TENSOR
REMARK 3 S11: -0.1094 S12: 0.3387 S13: 0.0738
REMARK 3 S21: -0.1204 S22: -0.1306 S23: -0.0734
REMARK 3 S31: -0.8160 S32: 1.2947 S33: 0.2946
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 326 )
REMARK 3 ORIGIN FOR THE GROUP (A): 31.6418 -12.6661 -21.4806
REMARK 3 T TENSOR
REMARK 3 T11: 0.3886 T22: 0.5211
REMARK 3 T33: 0.4798 T12: -0.0408
REMARK 3 T13: -0.0104 T23: -0.0774
REMARK 3 L TENSOR
REMARK 3 L11: 4.1224 L22: 2.2073
REMARK 3 L33: 3.3805 L12: -0.2499
REMARK 3 L13: 1.8243 L23: -1.1867
REMARK 3 S TENSOR
REMARK 3 S11: -0.3071 S12: 0.4682 S13: -0.2875
REMARK 3 S21: -0.0773 S22: 0.3941 S23: -0.3785
REMARK 3 S31: 0.0643 S32: 0.7825 S33: 0.1985
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 355 )
REMARK 3 ORIGIN FOR THE GROUP (A): 24.0734 -11.3574 -20.0076
REMARK 3 T TENSOR
REMARK 3 T11: 0.2682 T22: 0.2365
REMARK 3 T33: 0.2761 T12: -0.0693
REMARK 3 T13: -0.0287 T23: 0.0224
REMARK 3 L TENSOR
REMARK 3 L11: 5.3855 L22: 0.7732
REMARK 3 L33: 5.1267 L12: -0.5958
REMARK 3 L13: -0.5262 L23: -1.7591
REMARK 3 S TENSOR
REMARK 3 S11: -0.0078 S12: 0.4081 S13: -0.2726
REMARK 3 S21: -0.0764 S22: 0.2213 S23: -0.1040
REMARK 3 S31: -0.1122 S32: -0.0133 S33: -0.0841
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 356 THROUGH 374 )
REMARK 3 ORIGIN FOR THE GROUP (A): 18.1852 -2.5356 -20.0636
REMARK 3 T TENSOR
REMARK 3 T11: 0.4078 T22: 0.2936
REMARK 3 T33: 0.3368 T12: -0.0713
REMARK 3 T13: -0.0617 T23: 0.0174
REMARK 3 L TENSOR
REMARK 3 L11: 6.9246 L22: 5.5884
REMARK 3 L33: 3.7246 L12: 1.5636
REMARK 3 L13: 3.7894 L23: 3.5399
REMARK 3 S TENSOR
REMARK 3 S11: -0.3133 S12: -0.1067 S13: 0.6337
REMARK 3 S21: 0.2391 S22: -0.1824 S23: 0.1641
REMARK 3 S31: -0.5033 S32: -0.6592 S33: 0.6474
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 379 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.8614 -13.3160 -35.9125
REMARK 3 T TENSOR
REMARK 3 T11: 0.4169 T22: 0.6742
REMARK 3 T33: 0.5713 T12: -0.3139
REMARK 3 T13: -0.1151 T23: 0.0252
REMARK 3 L TENSOR
REMARK 3 L11: 4.7001 L22: 6.3207
REMARK 3 L33: 5.9894 L12: 4.9199
REMARK 3 L13: 5.2747 L23: 5.7781
REMARK 3 S TENSOR
REMARK 3 S11: -1.1491 S12: 1.9948 S13: -0.2734
REMARK 3 S21: -0.8983 S22: 1.5292 S23: -0.0094
REMARK 3 S31: -0.2953 S32: -0.5126 S33: -0.2084
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 282 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.8328 -32.1185 -13.2860
REMARK 3 T TENSOR
REMARK 3 T11: 0.7950 T22: 0.7480
REMARK 3 T33: 0.6454 T12: -0.2355
REMARK 3 T13: -0.0643 T23: 0.1335
REMARK 3 L TENSOR
REMARK 3 L11: 2.4516 L22: 5.6893
REMARK 3 L33: 7.8650 L12: 1.1994
REMARK 3 L13: 3.6773 L23: 3.3483
REMARK 3 S TENSOR
REMARK 3 S11: 0.2485 S12: 0.1693 S13: -0.8783
REMARK 3 S21: 0.0535 S22: 0.2987 S23: 0.6794
REMARK 3 S31: 0.9903 S32: -1.1312 S33: -0.4402
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 283 THROUGH 294 )
REMARK 3 ORIGIN FOR THE GROUP (A): 9.3169 -29.6041 -2.5098
REMARK 3 T TENSOR
REMARK 3 T11: 0.6184 T22: 0.3174
REMARK 3 T33: 0.3901 T12: -0.1438
REMARK 3 T13: 0.0537 T23: 0.0761
REMARK 3 L TENSOR
REMARK 3 L11: 0.8461 L22: 3.7810
REMARK 3 L33: 1.2202 L12: 1.7197
REMARK 3 L13: 0.9779 L23: 1.8806
REMARK 3 S TENSOR
REMARK 3 S11: -0.1319 S12: -0.1533 S13: -0.3741
REMARK 3 S21: -0.2985 S22: 0.1628 S23: 0.1632
REMARK 3 S31: 0.6316 S32: -0.0761 S33: -0.0408
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 295 THROUGH 317 )
REMARK 3 ORIGIN FOR THE GROUP (A): 9.3084 -12.0866 -5.0013
REMARK 3 T TENSOR
REMARK 3 T11: 0.3837 T22: 0.3180
REMARK 3 T33: 0.4463 T12: -0.0041
REMARK 3 T13: -0.0444 T23: 0.0248
REMARK 3 L TENSOR
REMARK 3 L11: 7.5224 L22: 5.5499
REMARK 3 L33: 5.6481 L12: 1.9823
REMARK 3 L13: -0.5469 L23: -1.6802
REMARK 3 S TENSOR
REMARK 3 S11: 0.3248 S12: -0.1360 S13: 0.6917
REMARK 3 S21: 0.2928 S22: -0.3675 S23: -0.1174
REMARK 3 S31: -0.2274 S32: -0.0074 S33: 0.1273
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 326 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.4362 -22.1947 -6.4068
REMARK 3 T TENSOR
REMARK 3 T11: 0.5579 T22: 0.6467
REMARK 3 T33: 0.4370 T12: -0.0694
REMARK 3 T13: -0.0858 T23: 0.0366
REMARK 3 L TENSOR
REMARK 3 L11: 6.6649 L22: 8.8266
REMARK 3 L33: 4.2711 L12: -1.0895
REMARK 3 L13: 0.5128 L23: -5.1792
REMARK 3 S TENSOR
REMARK 3 S11: 0.0064 S12: -0.5353 S13: -0.2888
REMARK 3 S21: 0.3477 S22: -0.0287 S23: 0.1549
REMARK 3 S31: -0.1606 S32: -1.5838 S33: -0.1408
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 327 THROUGH 355 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.2829 -20.2819 -13.7551
REMARK 3 T TENSOR
REMARK 3 T11: 0.4903 T22: 0.4174
REMARK 3 T33: 0.3399 T12: -0.0315
REMARK 3 T13: -0.0950 T23: 0.0952
REMARK 3 L TENSOR
REMARK 3 L11: 3.7178 L22: 1.5134
REMARK 3 L33: 2.4801 L12: 1.9408
REMARK 3 L13: -0.0506 L23: -0.2505
REMARK 3 S TENSOR
REMARK 3 S11: -0.0711 S12: 0.0802 S13: -0.0480
REMARK 3 S21: -0.3112 S22: 0.1885 S23: 0.1623
REMARK 3 S31: 0.3411 S32: -0.5149 S33: -0.1058
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 356 THROUGH 378 )
REMARK 3 ORIGIN FOR THE GROUP (A): 7.5847 -29.8171 -14.9388
REMARK 3 T TENSOR
REMARK 3 T11: 0.7499 T22: 0.3728
REMARK 3 T33: 0.3403 T12: -0.0992
REMARK 3 T13: -0.0565 T23: 0.0426
REMARK 3 L TENSOR
REMARK 3 L11: 2.3947 L22: 2.6114
REMARK 3 L33: 3.9501 L12: -2.3175
REMARK 3 L13: -1.0262 L23: -0.3565
REMARK 3 S TENSOR
REMARK 3 S11: -0.1829 S12: 1.0760 S13: -0.2987
REMARK 3 S21: -0.7329 S22: 0.3444 S23: 0.0519
REMARK 3 S31: 1.0258 S32: 0.1622 S33: -0.2488
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : 1
REMARK 3 NCS GROUP : 1
REMARK 3 NCS OPERATOR : 1
REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 266 THROUGH 269 OR
REMARK 3 RESID 271 THROUGH 272 OR RESID 274
REMARK 3 THROUGH 284 OR RESID 287 THROUGH 299 OR
REMARK 3 RESID 302 THROUGH 312 OR RESID 314
REMARK 3 THROUGH 321 OR RESID 323 THROUGH 326 OR
REMARK 3 RESID 328 THROUGH 334 OR RESID 336
REMARK 3 THROUGH 348 OR RESID 350 THROUGH 378))
REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 266 THROUGH 269 OR
REMARK 3 RESID 271 THROUGH 272 OR RESID 274
REMARK 3 THROUGH 284 OR RESID 287 THROUGH 299 OR
REMARK 3 RESID 302 THROUGH 312 OR RESID 314
REMARK 3 THROUGH 321 OR RESID 323 THROUGH 326 OR
REMARK 3 RESID 328 THROUGH 334 OR RESID 336
REMARK 3 THROUGH 348 OR RESID 350 THROUGH 378))
REMARK 3 ATOM PAIRS NUMBER : NULL
REMARK 3 RMSD : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7L9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-21.
REMARK 100 THE DEPOSITION ID IS D_1000253894.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 20-JUL-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 8.2.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17166
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270
REMARK 200 RESOLUTION RANGE LOW (A) : 48.900
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 200 DATA REDUNDANCY : 2.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4UYG
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 56.11
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SUCCINIC ACID, PH 7.0, VAPOR
REMARK 280 DIFFUSION, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.93400
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.96700
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.96700
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 127.93400
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 245
REMARK 465 GLY A 246
REMARK 465 SER A 247
REMARK 465 SER A 248
REMARK 465 HIS A 249
REMARK 465 HIS A 250
REMARK 465 HIS A 251
REMARK 465 HIS A 252
REMARK 465 HIS A 253
REMARK 465 HIS A 254
REMARK 465 SER A 255
REMARK 465 SER A 256
REMARK 465 GLY A 257
REMARK 465 LEU A 258
REMARK 465 VAL A 259
REMARK 465 PRO A 260
REMARK 465 ARG A 261
REMARK 465 MET B 245
REMARK 465 GLY B 246
REMARK 465 SER B 247
REMARK 465 SER B 248
REMARK 465 HIS B 249
REMARK 465 HIS B 250
REMARK 465 HIS B 251
REMARK 465 HIS B 252
REMARK 465 HIS B 253
REMARK 465 HIS B 254
REMARK 465 SER B 255
REMARK 465 SER B 256
REMARK 465 GLY B 257
REMARK 465 LEU B 258
REMARK 465 VAL B 259
REMARK 465 PRO B 260
REMARK 465 ARG B 261
REMARK 465 GLY B 262
REMARK 465 SER B 263
REMARK 465 HIS B 264
REMARK 465 PRO B 379
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 285 CG CD CE NZ
REMARK 470 LYS A 286 CG CD CE NZ
REMARK 470 LYS A 322 CG CD CE NZ
REMARK 470 LYS A 331 CG CD CE NZ
REMARK 470 PRO A 379 CG CD
REMARK 470 MET B 265 CG SD CE
REMARK 470 GLU B 270 CG CD OE1 OE2
REMARK 470 ARG B 273 CG CD NE CZ NH1 NH2
REMARK 470 VAL B 300 CG1 CG2
REMARK 470 ASN B 301 CG OD1 ND2
REMARK 470 LYS B 313 CG CD CE NZ
REMARK 470 ASN B 327 CG OD1 ND2
REMARK 470 LYS B 331 CG CD CE NZ
REMARK 470 LYS B 335 CG CD CE NZ
REMARK 470 LYS B 349 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE2 GLU A 270 NH1 ARG A 273 2.13
REMARK 500 OE1 GLU B 356 O HOH B 501 2.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 PRO A 379 N - CA - CB ANGL. DEV. = 9.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER B 267 130.01 65.94
REMARK 500 ILE B 377 -124.35 -123.29
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue XWP A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue XWP B 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue BME B 402
DBREF 7L9A A 268 379 UNP Q58F21 BRDT_HUMAN 269 380
DBREF 7L9A B 268 379 UNP Q58F21 BRDT_HUMAN 269 380
SEQADV 7L9A MET A 245 UNP Q58F21 INITIATING METHIONINE
SEQADV 7L9A GLY A 246 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER A 247 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER A 248 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS A 249 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS A 250 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS A 251 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS A 252 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS A 253 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS A 254 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER A 255 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER A 256 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A GLY A 257 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A LEU A 258 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A VAL A 259 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A PRO A 260 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A ARG A 261 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A GLY A 262 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER A 263 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS A 264 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A MET A 265 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A ALA A 266 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER A 267 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A MET B 245 UNP Q58F21 INITIATING METHIONINE
SEQADV 7L9A GLY B 246 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER B 247 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER B 248 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS B 249 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS B 250 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS B 251 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS B 252 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS B 253 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS B 254 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER B 255 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER B 256 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A GLY B 257 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A LEU B 258 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A VAL B 259 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A PRO B 260 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A ARG B 261 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A GLY B 262 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER B 263 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A HIS B 264 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A MET B 265 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A ALA B 266 UNP Q58F21 EXPRESSION TAG
SEQADV 7L9A SER B 267 UNP Q58F21 EXPRESSION TAG
SEQRES 1 A 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 135 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL THR GLU
SEQRES 3 A 135 GLN LEU ARG HIS CYS SER GLU ILE LEU LYS GLU MET LEU
SEQRES 4 A 135 ALA LYS LYS HIS PHE SER TYR ALA TRP PRO PHE TYR ASN
SEQRES 5 A 135 PRO VAL ASP VAL ASN ALA LEU GLY LEU HIS ASN TYR TYR
SEQRES 6 A 135 ASP VAL VAL LYS ASN PRO MET ASP LEU GLY THR ILE LYS
SEQRES 7 A 135 GLU LYS MET ASP ASN GLN GLU TYR LYS ASP ALA TYR LYS
SEQRES 8 A 135 PHE ALA ALA ASP VAL ARG LEU MET PHE MET ASN CYS TYR
SEQRES 9 A 135 LYS TYR ASN PRO PRO ASP HIS GLU VAL VAL THR MET ALA
SEQRES 10 A 135 ARG MET LEU GLN ASP VAL PHE GLU THR HIS PHE SER LYS
SEQRES 11 A 135 ILE PRO ILE GLU PRO
SEQRES 1 B 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 B 135 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL THR GLU
SEQRES 3 B 135 GLN LEU ARG HIS CYS SER GLU ILE LEU LYS GLU MET LEU
SEQRES 4 B 135 ALA LYS LYS HIS PHE SER TYR ALA TRP PRO PHE TYR ASN
SEQRES 5 B 135 PRO VAL ASP VAL ASN ALA LEU GLY LEU HIS ASN TYR TYR
SEQRES 6 B 135 ASP VAL VAL LYS ASN PRO MET ASP LEU GLY THR ILE LYS
SEQRES 7 B 135 GLU LYS MET ASP ASN GLN GLU TYR LYS ASP ALA TYR LYS
SEQRES 8 B 135 PHE ALA ALA ASP VAL ARG LEU MET PHE MET ASN CYS TYR
SEQRES 9 B 135 LYS TYR ASN PRO PRO ASP HIS GLU VAL VAL THR MET ALA
SEQRES 10 B 135 ARG MET LEU GLN ASP VAL PHE GLU THR HIS PHE SER LYS
SEQRES 11 B 135 ILE PRO ILE GLU PRO
HET XWP A 401 41
HET BME A 402 4
HET XWP B 401 41
HET BME B 402 4
HETNAM XWP N~1~-(5-{[3-(4-AMINO-2-METHYLPHENYL)-1-METHYL-1H-
HETNAM 2 XWP INDAZOLE-5-CARBONYL]AMINO}-2-METHYLPHENYL)-N~4~-
HETNAM 3 XWP METHYLBENZENE-1,4-DICARBOXAMIDE
HETNAM BME BETA-MERCAPTOETHANOL
FORMUL 3 XWP 2(C32 H30 N6 O3)
FORMUL 4 BME 2(C2 H6 O S)
FORMUL 7 HOH *39(H2 O)
HELIX 1 AA1 GLY A 262 LEU A 283 1 22
HELIX 2 AA2 ALA A 284 LYS A 286 5 3
HELIX 3 AA3 HIS A 287 TRP A 292 1 6
HELIX 4 AA4 PRO A 293 TYR A 295 5 3
HELIX 5 AA5 ASP A 299 GLY A 304 1 6
HELIX 6 AA6 ASN A 307 VAL A 312 1 6
HELIX 7 AA7 ASP A 317 ASN A 327 1 11
HELIX 8 AA8 ASP A 332 ASN A 351 1 20
HELIX 9 AA9 HIS A 355 SER A 373 1 19
HELIX 10 AB1 SER B 267 LEU B 283 1 17
HELIX 11 AB2 ALA B 284 LYS B 286 5 3
HELIX 12 AB3 HIS B 287 TRP B 292 1 6
HELIX 13 AB4 PRO B 293 TYR B 295 5 3
HELIX 14 AB5 ASP B 299 GLY B 304 1 6
HELIX 15 AB6 ASN B 307 VAL B 312 1 6
HELIX 16 AB7 ASP B 317 ASN B 327 1 11
HELIX 17 AB8 ASP B 332 ASN B 351 1 20
HELIX 18 AB9 HIS B 355 SER B 373 1 19
SITE 1 AC1 16 VAL A 298 LEU A 303 LEU A 305 HIS A 306
SITE 2 AC1 16 TYR A 308 VAL A 311 ASN A 346 CYS A 347
SITE 3 AC1 16 TYR A 350 ASN A 351 PRO A 352 HIS A 355
SITE 4 AC1 16 HOH A 512 TRP B 292 TYR B 295 ASN B 296
SITE 1 AC2 5 VAL A 312 LYS A 313 ASN A 314 ASN A 346
SITE 2 AC2 5 LYS A 349
SITE 1 AC3 21 TYR A 348 LYS A 349 ARG A 362 GLN A 365
SITE 2 AC3 21 LYS B 285 TRP B 292 PRO B 293 VAL B 298
SITE 3 AC3 21 LEU B 303 LEU B 305 HIS B 306 TYR B 308
SITE 4 AC3 21 VAL B 311 ASN B 346 CYS B 347 TYR B 350
SITE 5 AC3 21 ASN B 351 PRO B 352 HIS B 355 HOH B 504
SITE 6 AC3 21 HOH B 516
SITE 1 AC4 6 TRP B 292 PRO B 293 TYR B 295 ASN B 296
SITE 2 AC4 6 PRO B 297 ASP B 299
CRYST1 56.470 56.470 191.901 90.00 90.00 120.00 P 32 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017709 0.010224 0.000000 0.00000
SCALE2 0.000000 0.020448 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005211 0.00000