HEADER RNA 18-JAN-22 7QUU TITLE RED1-ISS10 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN C7D4.14C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NURS COMPLEX SUBUNIT RED1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SPAC7D4.14C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 11 ORGANISM_COMMON: FISSION YEAST; SOURCE 12 ORGANISM_TAXID: 4896; SOURCE 13 STRAIN: 972 / ATCC 24843; SOURCE 14 GENE: RED1, ISS3, SPAC1006.03C; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MTREC COMPLEX, RNA DEGRADATION, MEIOSIS, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.D.MACKERETH,J.KADLEC,H.LAROUSSI REVDAT 2 16-NOV-22 7QUU 1 JRNL REVDAT 1 07-SEP-22 7QUU 0 JRNL AUTH A.E.FOUCHER,L.TOUAT-TODESCHINI,A.B.JUAREZ-MARTINEZ, JRNL AUTH 2 A.RAKITCH,H.LAROUSSI,C.KARCZEWSKI,S.ACAJJAOUI,M.SOLER-LOPEZ, JRNL AUTH 3 S.CUSACK,C.D.MACKERETH,A.VERDEL,J.KADLEC JRNL TITL STRUCTURAL ANALYSIS OF RED1 AS A CONSERVED SCAFFOLD OF THE JRNL TITL 2 RNA-TARGETING MTREC/PAXT COMPLEX. JRNL REF NAT COMMUN V. 13 4969 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36002457 JRNL DOI 10.1038/S41467-022-32542-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7QUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1292120282. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 150 UM [U-99% 15N] RED1, 150 UM REMARK 210 [U-99% 15N] ISS10, 20 MM TRIS, REMARK 210 150 MM SODIUM CHLORIDE, 5 MM REMARK 210 BETA-MERCAPTOETHANOL, 90% H2O/10% REMARK 210 D2O; 500 UM [U-99% 13C; U-99% REMARK 210 15N] RED1, 500 UM [U-99% 13C; U- REMARK 210 99% 15N] ISS10, 20 MM TRIS, 150 REMARK 210 MM SODIUM CHLORIDE, 5 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O; REMARK 210 500 UM [U-99% 13C; U-99% 15N] REMARK 210 RED1, 500 UM [U-99% 13C; U-99% REMARK 210 15N] ISS10, 20 MM TRIS, 150 MM REMARK 210 SODIUM CHLORIDE, 5 MM BETA- REMARK 210 MERCAPTOETHANOL, 100% D2O; 150 REMARK 210 UM [U-99% 13C; U-99% 15N] RED1, REMARK 210 150 UM [U-99% 13C; U-99% 15N] REMARK 210 ISS10, 20 MM TRIS, 150 MM SODIUM REMARK 210 CHLORIDE, 5 MM BETA- REMARK 210 MERCAPTOETHANOL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D HNCA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNHA; 3D HA(CACO)NH; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 TROSY-RDC ISOTROPIC; 2D TROSY- REMARK 210 RDC PHAGE REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 4.0.6, NMRPIPE, SPARKY REMARK 210 NMRFAM REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -10 REMARK 465 GLY A -9 REMARK 465 TRP A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 PRO A -5 REMARK 465 GLN A -4 REMARK 465 PHE A -3 REMARK 465 GLU A -2 REMARK 465 LYS A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 4 99.15 75.21 REMARK 500 1 PRO A 33 -158.97 -93.08 REMARK 500 2 VAL A 4 79.79 64.80 REMARK 500 2 GLU A 5 -163.75 -77.66 REMARK 500 3 ASP A 2 46.41 35.82 REMARK 500 3 ALA A 3 69.87 -113.41 REMARK 500 3 VAL A 4 60.84 65.30 REMARK 500 3 ASP A 43 -167.18 -108.13 REMARK 500 4 VAL A 4 73.22 62.35 REMARK 500 4 ASP A 43 -75.71 -100.64 REMARK 500 5 ASP A 2 19.69 -141.28 REMARK 500 5 VAL A 4 76.22 62.07 REMARK 500 6 ALA A 3 62.68 -117.46 REMARK 500 6 VAL A 4 70.70 71.90 REMARK 500 7 VAL A 4 70.86 70.44 REMARK 500 7 ASP A 43 -76.66 -115.07 REMARK 500 8 VAL A 4 112.18 69.36 REMARK 500 9 VAL A 4 80.06 63.87 REMARK 500 9 ASP A 43 -165.75 -114.34 REMARK 500 9 ALA B 189 29.36 -148.30 REMARK 500 10 VAL A 4 103.32 72.29 REMARK 500 10 GLU A 5 -162.17 -101.04 REMARK 500 10 PRO A 33 -87.65 -86.21 REMARK 500 10 ASN A 34 -61.49 -130.22 REMARK 500 10 ALA B 189 -54.31 -146.06 REMARK 500 11 ASP A 2 45.44 -90.35 REMARK 500 11 VAL A 4 73.24 64.37 REMARK 500 11 GLU A 5 -164.07 -78.77 REMARK 500 11 ASP A 43 -165.88 -108.79 REMARK 500 12 VAL A 4 89.20 61.00 REMARK 500 12 PRO A 33 -72.99 -88.47 REMARK 500 12 ASN A 34 -62.43 -152.18 REMARK 500 13 VAL A 4 79.94 64.71 REMARK 500 13 GLU A 5 -165.49 -77.39 REMARK 500 13 ASP A 43 -65.49 -93.27 REMARK 500 13 MET B 190 -169.51 64.40 REMARK 500 14 ASP A 2 -62.01 -91.44 REMARK 500 14 VAL A 4 87.20 60.97 REMARK 500 14 ASP A 43 -88.81 -109.14 REMARK 500 15 VAL A 4 82.45 66.98 REMARK 500 15 PRO A 33 -159.88 -86.54 REMARK 500 15 MET B 190 -59.49 -155.33 REMARK 500 16 ASP A 2 -72.64 -144.01 REMARK 500 16 ALA A 3 74.18 -116.54 REMARK 500 16 MET B 190 122.86 70.99 REMARK 500 17 VAL A 4 55.81 -159.85 REMARK 500 17 ASP A 43 -80.21 -108.30 REMARK 500 17 ALA B 189 -67.31 -139.20 REMARK 500 18 ALA A 3 -164.47 56.24 REMARK 500 18 GLU A 5 -164.85 -100.63 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34702 RELATED DB: BMRB REMARK 900 RED1-ISS10 COMPLEX DBREF 7QUU A 2 44 UNP O14269 YFPE_SCHPO 2 44 DBREF 7QUU B 192 235 UNP Q9UTR8 RED1_SCHPO 192 235 SEQADV 7QUU MET A -10 UNP O14269 INITIATING METHIONINE SEQADV 7QUU GLY A -9 UNP O14269 EXPRESSION TAG SEQADV 7QUU TRP A -8 UNP O14269 EXPRESSION TAG SEQADV 7QUU SER A -7 UNP O14269 EXPRESSION TAG SEQADV 7QUU HIS A -6 UNP O14269 EXPRESSION TAG SEQADV 7QUU PRO A -5 UNP O14269 EXPRESSION TAG SEQADV 7QUU GLN A -4 UNP O14269 EXPRESSION TAG SEQADV 7QUU PHE A -3 UNP O14269 EXPRESSION TAG SEQADV 7QUU GLU A -2 UNP O14269 EXPRESSION TAG SEQADV 7QUU LYS A -1 UNP O14269 EXPRESSION TAG SEQADV 7QUU SER A 0 UNP O14269 EXPRESSION TAG SEQADV 7QUU SER A 1 UNP O14269 EXPRESSION TAG SEQADV 7QUU GLY B 188 UNP Q9UTR8 EXPRESSION TAG SEQADV 7QUU ALA B 189 UNP Q9UTR8 EXPRESSION TAG SEQADV 7QUU MET B 190 UNP Q9UTR8 EXPRESSION TAG SEQADV 7QUU GLY B 191 UNP Q9UTR8 EXPRESSION TAG SEQADV 7QUU SER B 236 UNP Q9UTR8 EXPRESSION TAG SEQRES 1 A 55 MET GLY TRP SER HIS PRO GLN PHE GLU LYS SER SER ASP SEQRES 2 A 55 ALA VAL GLU PRO SER VAL GLU LYS GLU TYR LYS LYS ILE SEQRES 3 A 55 ILE SER PHE ARG ASP THR VAL PHE GLU GLY LYS HIS GLN SEQRES 4 A 55 GLN PHE LEU VAL PRO ASN ASN VAL ARG LEU LYS PHE LEU SEQRES 5 A 55 ARG ASP ARG SEQRES 1 B 49 GLY ALA MET GLY THR THR ASN GLN LYS GLU ALA GLU LYS SEQRES 2 B 49 ALA VAL SER GLN LEU PHE GLU VAL GLY VAL ARG PHE ASN SEQRES 3 B 49 ASP PHE ILE ALA GLU GLY ILE GLU PRO SER VAL VAL HIS SEQRES 4 B 49 THR LEU PHE LEU LYS LEU GLY LEU ASP SER HELIX 1 AA1 PRO A 6 GLY A 25 1 20 HELIX 2 AA2 PRO A 33 ARG A 44 1 12 HELIX 3 AA3 THR B 193 GLY B 209 1 17 HELIX 4 AA4 ARG B 211 GLU B 218 1 8 HELIX 5 AA5 GLU B 221 LEU B 232 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20