HEADER DNA 29-SEP-21 7SDQ TITLE [MC:AG+:U] METAL-MEDIATED DNA BASE PAIR IN A SELF-ASSEMBLING TITLE 2 RHOMBOHEDRAL LATTICE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(5CM) COMPND 3 P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, METAL-MEDIATED KEYWDS 2 MISMATCH, DNA EXPDTA X-RAY DIFFRACTION AUTHOR B.LU,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 2 19-APR-23 7SDQ 1 JRNL REVDAT 1 05-OCT-22 7SDQ 0 JRNL AUTH S.VECCHIONI,B.LU,W.LIVERNOIS,Y.P.OHAYON,J.B.YODER,C.F.YANG, JRNL AUTH 2 K.WOLOSZYN,W.BERNFELD,M.P.ANANTRAM,J.W.CANARY, JRNL AUTH 3 W.A.HENDRICKSON,L.J.ROTHSCHILD,C.MAO,S.J.WIND,N.C.SEEMAN, JRNL AUTH 4 R.SHA JRNL TITL METAL-MEDIATED DNA NANOTECHNOLOGY IN 3D: STRUCTURAL LIBRARY JRNL TITL 2 BY TEMPLATED DIFFRACTION. JRNL REF ADV MATER 01938 2023 JRNL REFN ISSN 1521-4095 JRNL PMID 36939292 JRNL DOI 10.1002/ADMA.202201938 REMARK 2 REMARK 2 RESOLUTION. 4.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.1 REMARK 3 NUMBER OF REFLECTIONS : 1875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.810 REMARK 3 FREE R VALUE TEST SET COUNT : 109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6500 - 4.3000 0.71 1766 109 0.1997 0.2094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 233.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 286.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 957 REMARK 3 ANGLE : 1.217 1469 REMARK 3 CHIRALITY : 0.057 162 REMARK 3 PLANARITY : 0.006 42 REMARK 3 DIHEDRAL : 38.229 417 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 21) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9079 -3.5377 23.5129 REMARK 3 T TENSOR REMARK 3 T11: 3.4014 T22: 1.8646 REMARK 3 T33: 3.0092 T12: 0.4619 REMARK 3 T13: 0.3576 T23: 0.4534 REMARK 3 L TENSOR REMARK 3 L11: 9.8855 L22: 6.1953 REMARK 3 L33: 1.8280 L12: -2.0599 REMARK 3 L13: 2.9742 L23: -7.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.0803 S12: -0.9422 S13: -1.5256 REMARK 3 S21: 1.7343 S22: 3.7543 S23: 7.0108 REMARK 3 S31: -0.2571 S32: -1.3220 S33: -2.6142 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1493 -0.4530 22.2795 REMARK 3 T TENSOR REMARK 3 T11: 2.4459 T22: 3.1176 REMARK 3 T33: 2.9380 T12: -0.4602 REMARK 3 T13: -0.5342 T23: 0.6634 REMARK 3 L TENSOR REMARK 3 L11: 6.5467 L22: 3.0443 REMARK 3 L33: 6.8022 L12: 0.4334 REMARK 3 L13: -4.8276 L23: 2.4628 REMARK 3 S TENSOR REMARK 3 S11: 0.7888 S12: 3.3577 S13: 1.9461 REMARK 3 S21: 0.6868 S22: 0.6219 S23: 2.3797 REMARK 3 S31: 2.8340 S32: -3.0825 S33: -1.1005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 8 THROUGH 14) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1730 -20.6309 35.3005 REMARK 3 T TENSOR REMARK 3 T11: 2.4434 T22: 2.8283 REMARK 3 T33: 5.8060 T12: 0.2194 REMARK 3 T13: 0.3424 T23: 0.4888 REMARK 3 L TENSOR REMARK 3 L11: 9.1191 L22: 1.8039 REMARK 3 L33: 4.6304 L12: 3.3107 REMARK 3 L13: -5.5816 L23: -2.3986 REMARK 3 S TENSOR REMARK 3 S11: 0.9002 S12: -2.3260 S13: 1.2487 REMARK 3 S21: -0.6088 S22: 4.2634 S23: 7.4953 REMARK 3 S31: -0.4096 S32: -2.9264 S33: -4.3321 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3809 19.0329 8.3657 REMARK 3 T TENSOR REMARK 3 T11: 3.6936 T22: 1.5520 REMARK 3 T33: 2.7846 T12: -0.0984 REMARK 3 T13: 0.6480 T23: 0.7655 REMARK 3 L TENSOR REMARK 3 L11: 8.0928 L22: 3.1965 REMARK 3 L33: 3.8173 L12: -1.6572 REMARK 3 L13: -0.7684 L23: 1.2783 REMARK 3 S TENSOR REMARK 3 S11: -1.6298 S12: 4.1326 S13: -3.5099 REMARK 3 S21: -4.4161 S22: 2.3936 S23: -0.0629 REMARK 3 S31: 0.9546 S32: -1.7327 S33: -0.2006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7SDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1000259425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.65313 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1899 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.300 REMARK 200 RESOLUTION RANGE LOW (A) : 65.373 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 8.00500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS, MAGNESIUM SULFATE, SILVER REMARK 280 NITRATE, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.73250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.44512 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.20267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.73250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.44512 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.20267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.73250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.44512 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.20267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.89025 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.40533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 60.89025 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.40533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 60.89025 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.40533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DU B 4 P DU B 4 O5' 0.062 REMARK 500 DU B 4 C5' DU B 4 C4' -0.082 REMARK 500 DU B 4 C4' DU B 4 C3' 0.071 REMARK 500 DU B 4 C3' DU B 4 C2' -0.285 REMARK 500 DU B 4 C2' DU B 4 C1' 0.116 REMARK 500 DU B 4 O4' DU B 4 C1' -0.108 REMARK 500 DU B 4 O3' DU B 4 C3' 0.097 REMARK 500 DU B 4 C4 DU B 4 O4 -0.050 REMARK 500 DU B 4 N1 DU B 4 C2 0.111 REMARK 500 DU B 4 N1 DU B 4 C6 0.064 REMARK 500 DU B 4 C2 DU B 4 N3 0.110 REMARK 500 DU B 4 N3 DU B 4 C4 0.086 REMARK 500 DU B 4 C4 DU B 4 C5 0.059 REMARK 500 DU B 4 C5 DU B 4 C6 0.142 REMARK 500 DC D 1 P DC D 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 2 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT A 11 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DU B 4 OP1 - P - OP2 ANGL. DEV. = -10.7 DEGREES REMARK 500 DU B 4 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DU B 4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DU B 4 N1 - C2 - N3 ANGL. DEV. = 6.1 DEGREES REMARK 500 DU B 4 C2 - N3 - C4 ANGL. DEV. = -9.7 DEGREES REMARK 500 DU B 4 N3 - C4 - C5 ANGL. DEV. = 7.0 DEGREES REMARK 500 DU B 4 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 DU B 4 C5 - C4 - O4 ANGL. DEV. = -9.8 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA B 7 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 3 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5CM A 12 N3 REMARK 620 2 5CM A 12 N4 61.3 REMARK 620 3 DU B 4 O2 149.5 149.2 REMARK 620 4 DU B 4 N3 152.8 91.9 57.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5CM A 12 N4 REMARK 620 2 DA B 3 N6 84.7 REMARK 620 3 DU B 4 O4 105.3 91.5 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7SD6 RELATED DB: PDB REMARK 900 CONTAINS A DIFFERENT BASE PAIR IN THE SAME MOTIF. DBREF 7SDQ A 1 21 PDB 7SDQ 7SDQ 1 21 DBREF 7SDQ B 1 7 PDB 7SDQ 7SDQ 1 7 DBREF 7SDQ C 8 14 PDB 7SDQ 7SDQ 8 14 DBREF 7SDQ D 1 7 PDB 7SDQ 7SDQ 1 7 SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT 5CM DT SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 B 7 DC DC DA DU DA DC DA SEQRES 1 C 7 DG DG DC DT DG DC DT SEQRES 1 D 7 DC DT DG DA DT DG DT HET 5CM A 12 20 HET AG B 101 1 HET AG B 102 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM AG SILVER ION FORMUL 1 5CM C10 H16 N3 O7 P FORMUL 5 AG 2(AG 1+) LINK O3' DT A 11 P 5CM A 12 1555 1555 1.61 LINK O3' 5CM A 12 P DT A 13 1555 1555 1.61 LINK N3 5CM A 12 AG AG B 101 1555 1555 2.12 LINK N4 5CM A 12 AG AG B 101 1555 1555 2.57 LINK N4 5CM A 12 AG AG B 102 1555 1555 2.15 LINK N6 DA B 3 AG AG B 102 1555 1555 2.69 LINK O2 DU B 4 AG AG B 101 1555 1555 2.58 LINK N3 DU B 4 AG AG B 101 1555 1555 2.12 LINK O4 DU B 4 AG AG B 102 1555 1555 2.09 CRYST1 105.465 105.465 93.608 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009482 0.005474 0.000000 0.00000 SCALE2 0.000000 0.010949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010683 0.00000