HEADER DNA BINDING PROTEIN/DNA/RNA 01-MAY-23 8J8H TITLE SPARTA MONOMER BOUND WITH GUIDE-TARGET, STATE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIWI DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TIR DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(P*UP*GP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)- COMPND 12 3'); COMPND 13 CHAIN: E; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (25-MER); COMPND 17 CHAIN: F; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOFLAVIFILUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 1393122; SOURCE 4 GENE: SAMN05660895_1671; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOFLAVIFILUM THERMOPHILUM; SOURCE 9 ORGANISM_TAXID: 1393122; SOURCE 10 GENE: SAMN05660895_1670; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: THERMOFLAVIFILUM THERMOPHILUM; SOURCE 16 ORGANISM_TAXID: 1393122; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: THERMOFLAVIFILUM THERMOPHILUM; SOURCE 20 ORGANISM_TAXID: 1393122 KEYWDS SPARTA, AGO, TIR, DNA BINDING PROTEIN/DNA/RNA, DNA BINDING PROTEIN- KEYWDS 2 DNA-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Z.X.LI,L.J.GUO,P.P.HUANG,Y.B.XIAO,M.R.CHEN REVDAT 1 06-MAR-24 8J8H 0 JRNL AUTH L.GUO,P.HUANG,Z.LI,Y.C.SHIN,P.YAN,M.LU,M.CHEN,Y.XIAO JRNL TITL AUTO-INHIBITION AND ACTIVATION OF A SHORT JRNL TITL 2 ARGONAUTE-ASSOCIATED TIR-APAZ DEFENSE SYSTEM. JRNL REF NAT.CHEM.BIOL. 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 37932527 JRNL DOI 10.1038/S41589-023-01478-0 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 117819 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8J8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 11-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1300037419. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SHORT AGO COMPLEXED WITH TIR REMARK 245 -APAZ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 TYR A 148 REMARK 465 LYS A 149 REMARK 465 TYR A 150 REMARK 465 CYS A 151 REMARK 465 ARG A 152 REMARK 465 PRO A 153 REMARK 465 ASN A 154 REMARK 465 SER A 155 REMARK 465 VAL A 156 REMARK 465 LEU A 157 REMARK 465 PRO A 158 REMARK 465 ASN A 159 REMARK 465 GLU A 160 REMARK 465 LEU A 161 REMARK 465 VAL A 162 REMARK 465 GLN A 163 REMARK 465 THR A 164 REMARK 465 LYS A 165 REMARK 465 SER A 166 REMARK 465 LEU A 167 REMARK 465 ILE A 168 REMARK 465 SER A 169 REMARK 465 LYS A 170 REMARK 465 SER A 171 REMARK 465 LYS A 172 REMARK 465 ALA A 173 REMARK 465 LYS A 174 REMARK 465 SER A 175 REMARK 465 PHE A 176 REMARK 465 ARG A 177 REMARK 465 TYR A 178 REMARK 465 THR A 179 REMARK 465 PRO A 180 REMARK 465 THR A 181 REMARK 465 LEU A 182 REMARK 465 PHE A 183 REMARK 465 GLU A 184 REMARK 465 GLU A 185 REMARK 465 PHE A 186 REMARK 465 ASN A 187 REMARK 465 LYS A 188 REMARK 465 LYS A 189 REMARK 465 LEU A 190 REMARK 465 LYS A 191 REMARK 465 GLU A 192 REMARK 465 VAL A 193 REMARK 465 GLU A 194 REMARK 465 LYS A 195 REMARK 465 GLU A 196 REMARK 465 ALA A 197 REMARK 465 LYS A 198 REMARK 465 THR A 199 REMARK 465 TYR A 200 REMARK 465 ASN A 201 REMARK 465 TYR A 202 REMARK 465 ASP A 203 REMARK 465 ALA A 204 REMARK 465 GLN A 205 REMARK 465 MET B -33 REMARK 465 GLY B -32 REMARK 465 SER B -31 REMARK 465 SER B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 SER B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 LEU B -20 REMARK 465 VAL B -19 REMARK 465 PRO B -18 REMARK 465 ARG B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 ILE B 5 REMARK 465 PHE B 6 REMARK 465 ILE B 7 REMARK 465 SER B 8 REMARK 465 HIS B 9 REMARK 465 ALA B 10 REMARK 465 THR B 11 REMARK 465 PRO B 12 REMARK 465 GLU B 13 REMARK 465 ASP B 14 REMARK 465 ASP B 15 REMARK 465 ASP B 16 REMARK 465 PHE B 17 REMARK 465 THR B 18 REMARK 465 ARG B 19 REMARK 465 TRP B 20 REMARK 465 LEU B 21 REMARK 465 SER B 22 REMARK 465 LEU B 23 REMARK 465 LYS B 24 REMARK 465 LEU B 25 REMARK 465 ILE B 26 REMARK 465 GLY B 27 REMARK 465 LEU B 28 REMARK 465 GLY B 29 REMARK 465 TYR B 30 REMARK 465 GLU B 31 REMARK 465 VAL B 32 REMARK 465 TRP B 33 REMARK 465 CYS B 34 REMARK 465 ASP B 35 REMARK 465 ILE B 36 REMARK 465 LEU B 37 REMARK 465 PHE B 38 REMARK 465 LEU B 39 REMARK 465 ASP B 40 REMARK 465 LYS B 41 REMARK 465 GLY B 42 REMARK 465 VAL B 43 REMARK 465 ASP B 44 REMARK 465 PHE B 45 REMARK 465 TRP B 46 REMARK 465 SER B 47 REMARK 465 THR B 48 REMARK 465 ILE B 49 REMARK 465 GLU B 50 REMARK 465 LYS B 51 REMARK 465 GLU B 52 REMARK 465 ILE B 53 REMARK 465 ARG B 54 REMARK 465 GLU B 55 REMARK 465 ASN B 56 REMARK 465 THR B 57 REMARK 465 CYS B 58 REMARK 465 LYS B 59 REMARK 465 PHE B 60 REMARK 465 LEU B 61 REMARK 465 ILE B 62 REMARK 465 VAL B 63 REMARK 465 SER B 64 REMARK 465 SER B 65 REMARK 465 THR B 66 REMARK 465 ALA B 67 REMARK 465 GLY B 68 REMARK 465 ASN B 69 REMARK 465 LYS B 70 REMARK 465 ARG B 71 REMARK 465 GLU B 72 REMARK 465 GLY B 73 REMARK 465 VAL B 74 REMARK 465 LEU B 75 REMARK 465 LYS B 76 REMARK 465 GLU B 77 REMARK 465 LEU B 78 REMARK 465 ALA B 79 REMARK 465 VAL B 80 REMARK 465 ALA B 81 REMARK 465 THR B 82 REMARK 465 LYS B 83 REMARK 465 VAL B 84 REMARK 465 LYS B 85 REMARK 465 LYS B 86 REMARK 465 HIS B 87 REMARK 465 LEU B 88 REMARK 465 GLN B 89 REMARK 465 ASP B 90 REMARK 465 ASP B 91 REMARK 465 MET B 92 REMARK 465 PHE B 93 REMARK 465 ILE B 94 REMARK 465 ILE B 95 REMARK 465 PRO B 96 REMARK 465 LEU B 97 REMARK 465 ALA B 98 REMARK 465 ILE B 99 REMARK 465 ASP B 100 REMARK 465 GLU B 101 REMARK 465 ASN B 102 REMARK 465 LEU B 103 REMARK 465 SER B 104 REMARK 465 TYR B 105 REMARK 465 ASP B 106 REMARK 465 ASP B 107 REMARK 465 ILE B 108 REMARK 465 ASN B 109 REMARK 465 ILE B 110 REMARK 465 GLU B 111 REMARK 465 ILE B 112 REMARK 465 VAL B 113 REMARK 465 ARG B 114 REMARK 465 LEU B 115 REMARK 465 ASN B 116 REMARK 465 ALA B 117 REMARK 465 ILE B 118 REMARK 465 ASP B 119 REMARK 465 PHE B 120 REMARK 465 LYS B 121 REMARK 465 LYS B 122 REMARK 465 SER B 123 REMARK 465 TRP B 124 REMARK 465 ALA B 125 REMARK 465 LYS B 126 REMARK 465 GLY B 127 REMARK 465 LEU B 128 REMARK 465 GLN B 129 REMARK 465 ASP B 130 REMARK 465 LEU B 131 REMARK 465 LEU B 132 REMARK 465 ASP B 133 REMARK 465 ALA B 134 REMARK 465 PHE B 135 REMARK 465 GLU B 136 REMARK 465 LYS B 137 REMARK 465 GLN B 138 REMARK 465 GLU B 425 REMARK 465 GLU B 426 REMARK 465 GLU B 427 REMARK 465 SER B 428 REMARK 465 VAL B 429 REMARK 465 LEU B 430 REMARK 465 ALA B 431 REMARK 465 ASP B 432 REMARK 465 ILE B 433 REMARK 465 ASN B 434 REMARK 465 ASN B 435 REMARK 465 PHE B 436 REMARK 465 GLU B 437 REMARK 465 GLU B 438 REMARK 465 ASP B 439 REMARK 465 THR B 440 REMARK 465 GLU B 441 REMARK 465 ASP B 442 REMARK 465 LEU B 443 REMARK 465 ASP B 444 REMARK 465 GLU B 445 REMARK 465 LEU B 446 REMARK 465 GLU B 447 REMARK 465 ASP B 448 REMARK 465 ILE B 449 REMARK 465 GLU B 450 REMARK 465 U E 21 REMARK 465 DC F 1 REMARK 465 DA F 2 REMARK 465 DA F 3 REMARK 465 DC F 4 REMARK 465 DA F 24 REMARK 465 DT F 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U E 1 O2' REMARK 470 G E 2 O2' REMARK 470 A E 3 O2' REMARK 470 C E 4 O2' REMARK 470 G E 5 O2' REMARK 470 G E 6 O2' REMARK 470 C E 7 O2' REMARK 470 U E 8 O2' REMARK 470 C E 9 O2' REMARK 470 U E 10 O2' REMARK 470 A E 11 O2' REMARK 470 A E 12 O2' REMARK 470 U E 13 O2' REMARK 470 C E 14 O2' REMARK 470 U E 15 O2' REMARK 470 A E 16 O2' REMARK 470 U E 17 O2' REMARK 470 U E 18 O2' REMARK 470 A E 19 O2' REMARK 470 G E 20 O2' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U E 1 P U E 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 394 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO B 419 CA - N - CD ANGL. DEV. = -11.8 DEGREES REMARK 500 U E 1 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 U E 17 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 -167.77 -102.66 REMARK 500 ASN A 129 57.90 -97.21 REMARK 500 PHE A 245 52.59 -92.27 REMARK 500 LEU A 305 -7.84 67.65 REMARK 500 ASP A 306 3.66 59.85 REMARK 500 TRP A 320 -179.80 -64.20 REMARK 500 ASN A 322 73.12 51.46 REMARK 500 LYS A 379 -119.74 59.76 REMARK 500 LEU A 465 52.46 -92.83 REMARK 500 CYS A 470 31.82 -92.32 REMARK 500 TYR A 506 -5.07 79.89 REMARK 500 VAL B 140 73.06 52.40 REMARK 500 GLU B 166 -39.61 -130.98 REMARK 500 TRP B 192 13.94 51.37 REMARK 500 LYS B 229 -6.37 72.56 REMARK 500 GLU B 301 49.73 -85.51 REMARK 500 LYS B 315 -127.01 55.49 REMARK 500 ILE B 348 -60.82 -123.11 REMARK 500 ALA B 390 -168.11 -161.76 REMARK 500 THR B 418 113.68 -160.06 REMARK 500 GLU B 421 141.01 -170.21 REMARK 500 VAL B 422 -62.05 -122.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 468 OD1 REMARK 620 2 A E 3 OP1 91.0 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-36070 RELATED DB: EMDB REMARK 900 SPARTA MONOMER BOUND WITH GUIDE-TARGET, STATE 2 DBREF1 8J8H A 1 507 UNP A0A1I7NFD7_9BACT DBREF2 8J8H A A0A1I7NFD7 1 507 DBREF1 8J8H B 1 450 UNP A0A1I7NFG5_9BACT DBREF2 8J8H B A0A1I7NFG5 1 450 DBREF 8J8H E 1 21 PDB 8J8H 8J8H 1 21 DBREF 8J8H F 1 25 PDB 8J8H 8J8H 1 25 SEQADV 8J8H MET A -33 UNP A0A1I7NFD INITIATING METHIONINE SEQADV 8J8H GLY A -32 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H SER A -31 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H SER A -30 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H HIS A -29 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H HIS A -28 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H HIS A -27 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H HIS A -26 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H HIS A -25 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H HIS A -24 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H SER A -23 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H SER A -22 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLY A -21 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H LEU A -20 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H VAL A -19 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H PRO A -18 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H ARG A -17 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLY A -16 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H SER A -15 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H HIS A -14 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H MET A -13 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H ALA A -12 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H SER A -11 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H MET A -10 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H THR A -9 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLY A -8 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLY A -7 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLN A -6 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLN A -5 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H MET A -4 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLY A -3 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H ARG A -2 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H GLY A -1 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H SER A 0 UNP A0A1I7NFD EXPRESSION TAG SEQADV 8J8H MET B -33 UNP A0A1I7NFG INITIATING METHIONINE SEQADV 8J8H GLY B -32 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H SER B -31 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H SER B -30 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H HIS B -29 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H HIS B -28 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H HIS B -27 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H HIS B -26 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H HIS B -25 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H HIS B -24 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H SER B -23 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H SER B -22 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLY B -21 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H LEU B -20 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H VAL B -19 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H PRO B -18 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H ARG B -17 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLY B -16 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H SER B -15 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H HIS B -14 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H MET B -13 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H ALA B -12 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H SER B -11 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H MET B -10 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H THR B -9 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLY B -8 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLY B -7 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLN B -6 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLN B -5 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H MET B -4 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLY B -3 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H ARG B -2 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H GLY B -1 UNP A0A1I7NFG EXPRESSION TAG SEQADV 8J8H SER B 0 UNP A0A1I7NFG EXPRESSION TAG SEQRES 1 A 541 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 541 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 541 GLY GLN GLN MET GLY ARG GLY SER MET LYS GLU LEU ILE SEQRES 4 A 541 TYR ILE GLU GLU PRO SER ILE LEU PHE ALA HIS GLY GLN SEQRES 5 A 541 LYS CYS THR ASP PRO ARG ASP GLY LEU ALA LEU PHE GLY SEQRES 6 A 541 PRO LEU ASN GLN ILE TYR GLY ILE LYS SER GLY VAL VAL SEQRES 7 A 541 GLY THR GLN LYS GLY LEU GLN ILE PHE LYS SER TYR LEU SEQRES 8 A 541 ASP LYS ILE GLN LYS PRO ILE TYR ASN HIS ASN ASN ILE SEQRES 9 A 541 THR ARG PRO MET PHE PRO GLY PHE GLU ALA VAL PHE GLY SEQRES 10 A 541 CYS LYS TRP GLU SER GLN ASN ILE VAL PHE LYS GLU ILE SEQRES 11 A 541 THR ASP GLU GLU ILE ARG ARG TYR LEU PHE ASN ALA SER SEQRES 12 A 541 THR HIS LYS ARG THR TYR ASP LEU VAL THR LEU PHE ASN SEQRES 13 A 541 ASP LYS ILE ILE THR ALA ASN LYS ASN ASP GLU GLU ARG SEQRES 14 A 541 VAL ASP VAL TRP PHE VAL ILE VAL PRO GLU GLU ILE TYR SEQRES 15 A 541 LYS TYR CYS ARG PRO ASN SER VAL LEU PRO ASN GLU LEU SEQRES 16 A 541 VAL GLN THR LYS SER LEU ILE SER LYS SER LYS ALA LYS SEQRES 17 A 541 SER PHE ARG TYR THR PRO THR LEU PHE GLU GLU PHE ASN SEQRES 18 A 541 LYS LYS LEU LYS GLU VAL GLU LYS GLU ALA LYS THR TYR SEQRES 19 A 541 ASN TYR ASP ALA GLN PHE HIS ASP GLN LEU LYS ALA ARG SEQRES 20 A 541 LEU LEU GLU HIS THR ILE PRO THR GLN ILE LEU ARG GLU SEQRES 21 A 541 SER THR LEU ALA TRP ARG ASP PHE LYS ASN THR PHE GLY SEQRES 22 A 541 ALA PRO ILE ARG ASP PHE SER LYS ILE GLU GLY HIS LEU SEQRES 23 A 541 ALA TRP THR ILE SER THR ALA ALA TYR TYR LYS ALA GLY SEQRES 24 A 541 GLY LYS PRO TRP LYS LEU GLY ASP ILE ARG PRO GLY VAL SEQRES 25 A 541 CYS TYR LEU GLY LEU VAL TYR LYS LYS ILE GLU LYS SER SEQRES 26 A 541 LYS ASN PRO GLN ASN ALA CYS CYS ALA ALA GLN MET PHE SEQRES 27 A 541 LEU ASP ASN GLY ASP GLY THR VAL PHE LYS GLY GLU VAL SEQRES 28 A 541 GLY PRO TRP TYR ASN PRO GLU LYS GLY GLU TYR HIS LEU SEQRES 29 A 541 LYS PRO LYS GLU ALA LYS ALA LEU LEU THR GLN ALA LEU SEQRES 30 A 541 GLU SER TYR LYS GLU GLN ASN LYS SER TYR PRO LYS GLU SEQRES 31 A 541 VAL PHE ILE HIS ALA ARG THR ARG PHE ASN ASP GLU GLU SEQRES 32 A 541 TRP ASN ALA PHE ASN GLU VAL THR PRO LYS ASN THR ASN SEQRES 33 A 541 LEU VAL GLY VAL THR ILE THR LYS SER LYS PRO LEU LYS SEQRES 34 A 541 LEU TYR LYS THR GLU GLY ALA PHE PRO ILE MET ARG GLY SEQRES 35 A 541 ASN ALA TYR ILE VAL ASP GLU LYS LYS ALA PHE LEU TRP SEQRES 36 A 541 THR LEU GLY PHE VAL PRO LYS LEU GLN SER THR LEU SER SEQRES 37 A 541 MET GLU VAL PRO ASN PRO ILE PHE ILE GLU ILE ASN LYS SEQRES 38 A 541 GLY GLU ALA GLU ILE GLN GLN VAL LEU LYS ASP ILE LEU SEQRES 39 A 541 ALA LEU THR LYS LEU ASN TYR ASN ALA CYS ILE TYR ALA SEQRES 40 A 541 ASP GLY GLU PRO VAL THR LEU ARG PHE ALA ASN LYS ILE SEQRES 41 A 541 GLY GLU ILE LEU THR ALA SER THR GLU ILE LYS THR PRO SEQRES 42 A 541 PRO LEU ALA PHE LYS TYR TYR ILE SEQRES 1 B 484 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 484 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 484 GLY GLN GLN MET GLY ARG GLY SER MET ARG ASN LYS ILE SEQRES 4 B 484 PHE ILE SER HIS ALA THR PRO GLU ASP ASP ASP PHE THR SEQRES 5 B 484 ARG TRP LEU SER LEU LYS LEU ILE GLY LEU GLY TYR GLU SEQRES 6 B 484 VAL TRP CYS ASP ILE LEU PHE LEU ASP LYS GLY VAL ASP SEQRES 7 B 484 PHE TRP SER THR ILE GLU LYS GLU ILE ARG GLU ASN THR SEQRES 8 B 484 CYS LYS PHE LEU ILE VAL SER SER THR ALA GLY ASN LYS SEQRES 9 B 484 ARG GLU GLY VAL LEU LYS GLU LEU ALA VAL ALA THR LYS SEQRES 10 B 484 VAL LYS LYS HIS LEU GLN ASP ASP MET PHE ILE ILE PRO SEQRES 11 B 484 LEU ALA ILE ASP GLU ASN LEU SER TYR ASP ASP ILE ASN SEQRES 12 B 484 ILE GLU ILE VAL ARG LEU ASN ALA ILE ASP PHE LYS LYS SEQRES 13 B 484 SER TRP ALA LYS GLY LEU GLN ASP LEU LEU ASP ALA PHE SEQRES 14 B 484 GLU LYS GLN ASN VAL PRO LYS LYS PRO PRO ASP HIS SER SEQRES 15 B 484 LYS SER ASN LEU LEU TYR GLN GLN ILE PHE LEU HIS ASP SEQRES 16 B 484 LYS GLN ALA ILE GLU LYS GLU GLU THR TYR ASP SER ASN SEQRES 17 B 484 TRP PHE PRO ILE ILE SER PHE PRO ASN GLU LEU ARG PHE SEQRES 18 B 484 HIS ARG TYR ASP TRP ARG LEU PRO LYS GLN PHE ASP VAL SEQRES 19 B 484 ARG THR LEU ALA PHE PRO ALA ILE ARG TYR LYS GLU TYR SEQRES 20 B 484 LEU CYS THR PHE ALA TRP GLU TYR ASP PHE ILE HIS GLN SEQRES 21 B 484 LEU PRO LYS THR GLU THR TYR ASN GLY GLN GLU SER ILE SEQRES 22 B 484 ARG ILE SER THR SER ASP ILE LEU SER GLY ARG TYR ASP SEQRES 23 B 484 THR ASP PHE ILE ARG ASN TYR GLU CYS GLN ARG LEU ILE SEQRES 24 B 484 VAL GLN LEU ILE ASN LYS ALA PHE GLU LEU ARG MET LYS SEQRES 25 B 484 ASP LYS ASN VAL ARG GLU TYR GLN MET SER LYS THR PHE SEQRES 26 B 484 ALA TYR TRP ILE GLU LYS GLY LYS LEU GLU LYS ASP LYS SEQRES 27 B 484 PHE GLU LYS ILE LYS LEU VAL GLY LYS GLN LYS ASN LYS SEQRES 28 B 484 TYR TRP HIS PHE GLY ILE SER ALA ALA GLY LYS LEU TYR SEQRES 29 B 484 PRO SER PRO VAL LEU MET VAL SER SER HIS ILE ILE PHE SEQRES 30 B 484 THR MET ASP GLY ILE ASN LEU ILE LYS SER LYS SER ILE SEQRES 31 B 484 GLN HIS SER SER ARG ARG LYS GLN GLY LYS ASN TRP TRP SEQRES 32 B 484 ASN ASP LYS TRP ARG GLU LYS LEU LEU ALA PHE ILE ARG SEQRES 33 B 484 PHE LEU SER ASP ASP GLN ASN ALA ILE TYR LEU ASN VAL SEQRES 34 B 484 GLY SER GLU GLU LYS ILE LEU ILE SER ASN LYS PRO LEU SEQRES 35 B 484 LYS PHE PHE GLY LYS MET SER TYR VAL THR PRO SER GLU SEQRES 36 B 484 VAL THR LEU GLU GLU GLU SER VAL LEU ALA ASP ILE ASN SEQRES 37 B 484 ASN PHE GLU GLU ASP THR GLU ASP LEU ASP GLU LEU GLU SEQRES 38 B 484 ASP ILE GLU SEQRES 1 E 21 U G A C G G C U C U A A U SEQRES 2 E 21 C U A U U A G U SEQRES 1 F 25 DC DA DA DC DT DA DA DT DA DG DA DT DT SEQRES 2 F 25 DA DG DA DG DC DC DG DT DC DA DA DT HET MG A 601 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG MG 2+ HELIX 1 AA1 ALA A 15 GLY A 17 5 3 HELIX 2 AA2 ASP A 22 GLY A 31 1 10 HELIX 3 AA3 THR A 46 GLN A 61 1 16 HELIX 4 AA4 GLY A 77 PHE A 82 1 6 HELIX 5 AA5 THR A 97 PHE A 106 1 10 HELIX 6 AA6 THR A 110 ASN A 129 1 20 HELIX 7 AA7 HIS A 207 GLU A 216 1 10 HELIX 8 AA8 SER A 227 ALA A 230 5 4 HELIX 9 AA9 HIS A 251 ALA A 264 1 14 HELIX 10 AB1 LYS A 331 ASN A 350 1 20 HELIX 11 AB2 ASP A 367 GLU A 375 1 9 HELIX 12 AB3 GLU A 451 THR A 463 1 13 HELIX 13 AB4 PRO A 477 THR A 491 1 15 HELIX 14 AB5 ASP B 146 GLN B 155 1 10 HELIX 15 AB6 ASP B 199 LEU B 203 5 5 HELIX 16 AB7 LYS B 229 TYR B 233 5 5 HELIX 17 AB8 ASN B 234 SER B 238 5 5 HELIX 18 AB9 THR B 243 GLY B 249 1 7 HELIX 19 AC1 ARG B 257 LYS B 278 1 22 HELIX 20 AC2 SER B 353 LYS B 366 1 14 HELIX 21 AC3 TRP B 369 SER B 385 1 17 SHEET 1 AA110 VAL A 278 GLY A 282 0 SHEET 2 AA110 GLU A 356 ALA A 361 1 O HIS A 360 N LEU A 281 SHEET 3 AA110 ASN A 382 THR A 389 1 O ILE A 388 N ALA A 361 SHEET 4 AA110 ILE A 441 ILE A 445 -1 O PHE A 442 N THR A 389 SHEET 5 AA110 LYS A 417 LEU A 420 -1 N ALA A 418 O ILE A 443 SHEET 6 AA110 ASN A 409 ILE A 412 -1 N TYR A 411 O PHE A 419 SHEET 7 AA110 LYS A 2 TYR A 6 -1 N ILE A 5 O ALA A 410 SHEET 8 AA110 LYS B 409 GLY B 412 1 O PHE B 411 N LYS A 2 SHEET 9 AA110 GLU B 169 ASP B 172 -1 N TYR B 171 O PHE B 410 SHEET 10 AA110 TYR A 397 LYS A 398 -1 N TYR A 397 O ASP B 172 SHEET 1 AA2 3 LYS A 19 CYS A 20 0 SHEET 2 AA2 3 ILE A 12 LEU A 13 -1 N ILE A 12 O CYS A 20 SHEET 3 AA2 3 LYS A 270 LEU A 271 -1 O LYS A 270 N LEU A 13 SHEET 1 AA3 4 VAL A 92 PHE A 93 0 SHEET 2 AA3 4 SER A 41 VAL A 44 1 N SER A 41 O VAL A 92 SHEET 3 AA3 4 VAL A 138 VAL A 143 1 O PHE A 140 N GLY A 42 SHEET 4 AA3 4 THR A 221 ARG A 225 1 O LEU A 224 N VAL A 141 SHEET 1 AA4 2 TYR A 285 LYS A 286 0 SHEET 2 AA4 2 CYS A 298 CYS A 299 -1 O CYS A 298 N LYS A 286 SHEET 1 AA5 2 GLN A 302 MET A 303 0 SHEET 2 AA5 2 THR A 311 VAL A 312 -1 O THR A 311 N MET A 303 SHEET 1 AA6 2 PHE A 425 VAL A 426 0 SHEET 2 AA6 2 SER A 431 THR A 432 -1 O SER A 431 N VAL A 426 SHEET 1 AA7 3 TRP B 175 PRO B 177 0 SHEET 2 AA7 3 VAL B 334 MET B 336 -1 O LEU B 335 N PHE B 176 SHEET 3 AA7 3 ALA B 326 LYS B 328 -1 N ALA B 326 O MET B 336 SHEET 1 AA8 4 ILE B 208 ARG B 209 0 SHEET 2 AA8 4 LEU B 214 THR B 216 -1 O CYS B 215 N ILE B 208 SHEET 3 AA8 4 GLU B 184 HIS B 188 -1 N ARG B 186 O THR B 216 SHEET 4 AA8 4 ILE B 239 SER B 242 -1 O ILE B 241 N LEU B 185 SHEET 1 AA9 4 ARG B 283 GLN B 286 0 SHEET 2 AA9 4 PHE B 291 TRP B 294 -1 O TRP B 294 N ARG B 283 SHEET 3 AA9 4 LYS B 317 ILE B 323 -1 O ILE B 323 N TYR B 293 SHEET 4 AA9 4 VAL B 311 GLN B 314 -1 N GLY B 312 O TRP B 319 SHEET 1 AB1 4 ARG B 283 GLN B 286 0 SHEET 2 AB1 4 PHE B 291 TRP B 294 -1 O TRP B 294 N ARG B 283 SHEET 3 AB1 4 LYS B 317 ILE B 323 -1 O ILE B 323 N TYR B 293 SHEET 4 AB1 4 SER B 339 THR B 344 -1 O ILE B 342 N HIS B 320 SHEET 1 AB2 2 ALA B 390 ASN B 394 0 SHEET 2 AB2 2 LYS B 400 SER B 404 -1 O ILE B 401 N LEU B 393 LINK OD1 ASN A 468 MG MG A 601 1555 1555 2.24 LINK MG MG A 601 OP1 A E 3 1555 1555 1.91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000