HEADER TRANSCRIPTION 09-JAN-24 8XSB
TITLE CRYSTAL STRUCTURE OF THE DNA-BOUND AHR-ARNT HETERODIMER IN COMPLEX
TITLE 2 WITH INDIRUBIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ARNT PROTEIN;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: ARYL HYDROCARBON RECEPTOR;
COMPND 8 CHAIN: B;
COMPND 9 ENGINEERED: YES;
COMPND 10 MOL_ID: 3;
COMPND 11 MOLECULE: DNAF;
COMPND 12 CHAIN: C;
COMPND 13 ENGINEERED: YES;
COMPND 14 MOL_ID: 4;
COMPND 15 MOLECULE: DNAR;
COMPND 16 CHAIN: D;
COMPND 17 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ARNT;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 MOL_ID: 2;
SOURCE 10 ORGANISM_SCIENTIFIC: SUS SCROFA;
SOURCE 11 ORGANISM_COMMON: PIG;
SOURCE 12 ORGANISM_TAXID: 9823;
SOURCE 13 GENE: AHR;
SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 17 MOL_ID: 3;
SOURCE 18 SYNTHETIC: YES;
SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 20 ORGANISM_TAXID: 9606;
SOURCE 21 MOL_ID: 4;
SOURCE 22 SYNTHETIC: YES;
SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 24 ORGANISM_TAXID: 9606
KEYWDS ARYL HYDROCARBON RECEPTOR, INDIRUBIN, BHLH-PAS, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR X.DIAO,Q.SHANG,D.WU
REVDAT 1 15-JAN-25 8XSB 0
JRNL AUTH X.DIAO,Q.SHANG,M.GUO,Y.HUANG,M.ZHANG,X.CHEN,Y.LIANG,X.SUN,
JRNL AUTH 2 J.ZHUANG,S.LIU,C.F.A.VOGEL,F.RASTINEJAD,D.WU
JRNL TITL STRUCTURAL MECHANISM OF THE LIGAND-ACTIVATED HETERODIMERIC
JRNL TITL 2 AHR-ARNT COMPLEX
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 3.06 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.14
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.06
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6
REMARK 3 NUMBER OF REFLECTIONS : 20087
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.200
REMARK 3 FREE R VALUE : 0.240
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1005
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 36.0000 - 5.8384 0.98 2759 145 0.2014 0.2142
REMARK 3 2 5.8384 - 4.6373 0.99 2751 145 0.1752 0.2256
REMARK 3 3 4.6373 - 4.0520 0.99 2750 145 0.1669 0.2136
REMARK 3 4 4.0520 - 3.6819 0.99 2731 143 0.1932 0.2370
REMARK 3 5 3.6819 - 3.4182 0.99 2709 143 0.2085 0.2697
REMARK 3 6 3.4182 - 3.2168 0.98 2699 143 0.2549 0.2840
REMARK 3 7 3.2168 - 3.0600 0.97 2683 141 0.2838 0.3372
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.210
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 6097
REMARK 3 ANGLE : 0.524 8403
REMARK 3 CHIRALITY : 0.039 927
REMARK 3 PLANARITY : 0.004 928
REMARK 3 DIHEDRAL : 11.462 4095
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): 19.5292 2.8952 13.1280
REMARK 3 T TENSOR
REMARK 3 T11: 0.3872 T22: 0.3365
REMARK 3 T33: 0.3835 T12: 0.0826
REMARK 3 T13: 0.0803 T23: 0.0526
REMARK 3 L TENSOR
REMARK 3 L11: 1.7775 L22: 0.6330
REMARK 3 L33: 0.3646 L12: 0.4918
REMARK 3 L13: 0.1361 L23: 0.1972
REMARK 3 S TENSOR
REMARK 3 S11: 0.0129 S12: -0.2807 S13: -0.0499
REMARK 3 S21: 0.0282 S22: -0.0138 S23: -0.0807
REMARK 3 S31: 0.0491 S32: 0.0782 S33: 0.0034
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8XSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-24.
REMARK 100 THE DEPOSITION ID IS D_1300043759.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-MAR-23
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL18U1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20126
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.060
REMARK 200 RESOLUTION RANGE LOW (A) : 49.820
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 200 DATA REDUNDANCY : 6.800
REMARK 200 R MERGE (I) : 0.14900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.06
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.17
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3
REMARK 200 DATA REDUNDANCY IN SHELL : 6.80
REMARK 200 R MERGE FOR SHELL (I) : 0.81000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.32
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM CITRATE TRIBASIC
REMARK 280 MONOHYDRATE, PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.81600
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 12950 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 36070 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LEU A 122
REMARK 465 ALA A 123
REMARK 465 ARG A 124
REMARK 465 GLY A 144
REMARK 465 THR A 145
REMARK 465 GLY A 146
REMARK 465 ASN A 147
REMARK 465 THR A 148
REMARK 465 SER A 149
REMARK 465 THR A 150
REMARK 465 ASP A 151
REMARK 465 GLY A 152
REMARK 465 SER A 153
REMARK 465 TYR A 154
REMARK 465 LYS A 155
REMARK 465 SER A 228
REMARK 465 GLU A 229
REMARK 465 ASN A 230
REMARK 465 ALA A 231
REMARK 465 LEU A 232
REMARK 465 THR A 233
REMARK 465 GLY A 234
REMARK 465 ARG A 235
REMARK 465 ILE A 236
REMARK 465 LEU A 237
REMARK 465 ASP A 238
REMARK 465 LEU A 239
REMARK 465 LYS A 240
REMARK 465 THR A 241
REMARK 465 GLY A 242
REMARK 465 THR A 243
REMARK 465 VAL A 244
REMARK 465 LYS A 245
REMARK 465 LYS A 246
REMARK 465 GLU A 247
REMARK 465 GLY A 248
REMARK 465 GLN A 249
REMARK 465 GLN A 250
REMARK 465 SER A 251
REMARK 465 SER A 252
REMARK 465 MET A 253
REMARK 465 ARG A 254
REMARK 465 MET A 255
REMARK 465 CYS A 256
REMARK 465 MET A 257
REMARK 465 GLY A 258
REMARK 465 GLY A 270
REMARK 465 SER A 271
REMARK 465 SER A 272
REMARK 465 SER A 273
REMARK 465 VAL A 274
REMARK 465 ASP A 275
REMARK 465 PRO A 276
REMARK 465 VAL A 277
REMARK 465 SER A 278
REMARK 465 VAL A 279
REMARK 465 ASN A 280
REMARK 465 ARG A 281
REMARK 465 LEU A 282
REMARK 465 SER A 283
REMARK 465 PHE A 284
REMARK 465 VAL A 285
REMARK 465 ARG A 286
REMARK 465 ASN A 287
REMARK 465 ARG A 288
REMARK 465 CYS A 289
REMARK 465 ARG A 290
REMARK 465 ASN A 291
REMARK 465 GLY A 292
REMARK 465 LEU A 293
REMARK 465 GLY A 294
REMARK 465 SER A 295
REMARK 465 VAL A 296
REMARK 465 LYS A 297
REMARK 465 ASP A 298
REMARK 465 GLY A 299
REMARK 465 VAL A 345
REMARK 465 THR A 346
REMARK 465 SER A 347
REMARK 465 SER A 348
REMARK 465 PRO A 349
REMARK 465 ASN A 350
REMARK 465 CYS A 351
REMARK 465 THR A 352
REMARK 465 ASP A 353
REMARK 465 MET A 354
REMARK 465 SER A 355
REMARK 465 ASN A 356
REMARK 465 VAL A 357
REMARK 465 CYS A 358
REMARK 465 GLN A 359
REMARK 465 LYS A 465
REMARK 465 MET B 25
REMARK 465 ILE B 26
REMARK 465 PRO B 27
REMARK 465 ALA B 28
REMARK 465 GLU B 29
REMARK 465 GLY B 30
REMARK 465 ILE B 31
REMARK 465 LYS B 32
REMARK 465 SER B 89
REMARK 465 SER B 90
REMARK 465 PRO B 91
REMARK 465 ALA B 92
REMARK 465 ASP B 93
REMARK 465 ARG B 94
REMARK 465 ASN B 95
REMARK 465 TRP B 175
REMARK 465 ALA B 176
REMARK 465 LEU B 177
REMARK 465 ASN B 178
REMARK 465 PRO B 179
REMARK 465 SER B 180
REMARK 465 GLN B 181
REMARK 465 CYS B 182
REMARK 465 PRO B 183
REMARK 465 ASP B 184
REMARK 465 SER B 185
REMARK 465 GLY B 186
REMARK 465 GLN B 187
REMARK 465 ARG B 188
REMARK 465 ILE B 189
REMARK 465 ASP B 190
REMARK 465 GLU B 191
REMARK 465 ALA B 192
REMARK 465 SER B 193
REMARK 465 GLY B 194
REMARK 465 LEU B 195
REMARK 465 SER B 196
REMARK 465 GLN B 197
REMARK 465 PRO B 198
REMARK 465 ALA B 199
REMARK 465 ALA B 200
REMARK 465 TYR B 201
REMARK 465 TYR B 202
REMARK 465 ASN B 203
REMARK 465 PRO B 204
REMARK 465 GLU B 205
REMARK 465 GLN B 206
REMARK 465 LEU B 207
REMARK 465 PRO B 208
REMARK 465 PRO B 209
REMARK 465 GLU B 210
REMARK 465 ASN B 211
REMARK 465 SER B 212
REMARK 465 PHE B 213
REMARK 465 ASP B 227
REMARK 465 ASN B 228
REMARK 465 SER B 229
REMARK 465 SER B 230
REMARK 465 PRO B 273
REMARK 465 SER B 274
REMARK 465 ILE B 275
REMARK 465 LEU B 276
REMARK 465 HIS B 414
REMARK 465 HIS B 415
REMARK 465 HIS B 416
REMARK 465 HIS B 417
REMARK 465 HIS B 418
REMARK 465 HIS B 419
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O2 DC C 1 N2 DG D 1 1655 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 117 -77.87 -54.50
REMARK 500 ALA A 172 31.47 -145.98
REMARK 500 ASP A 173 -148.25 53.36
REMARK 500 ASP A 325 41.23 -89.94
REMARK 500 LEU A 418 70.03 -109.96
REMARK 500 TYR A 450 -61.71 -104.57
REMARK 500 THR B 140 -5.32 -59.68
REMARK 500 ILE B 278 -120.61 -148.03
REMARK 500 THR B 280 0.03 -66.55
REMARK 500 ASP B 375 -51.68 -125.20
REMARK 500 PHE B 402 18.95 59.45
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8XSB A 85 465 UNP P27540 ARNT_HUMAN 85 465
DBREF 8XSB B 26 413 UNP I3LF82 I3LF82_PIG 26 413
DBREF 8XSB C 1 21 PDB 8XSB 8XSB 1 21
DBREF 8XSB D 1 21 PDB 8XSB 8XSB 1 21
SEQADV 8XSB MET A 84 UNP P27540 INITIATING METHIONINE
SEQADV 8XSB MET B 25 UNP I3LF82 INITIATING METHIONINE
SEQADV 8XSB HIS B 414 UNP I3LF82 EXPRESSION TAG
SEQADV 8XSB HIS B 415 UNP I3LF82 EXPRESSION TAG
SEQADV 8XSB HIS B 416 UNP I3LF82 EXPRESSION TAG
SEQADV 8XSB HIS B 417 UNP I3LF82 EXPRESSION TAG
SEQADV 8XSB HIS B 418 UNP I3LF82 EXPRESSION TAG
SEQADV 8XSB HIS B 419 UNP I3LF82 EXPRESSION TAG
SEQRES 1 A 382 MET ASP LYS GLU ARG LEU ALA ARG GLU ASN HIS SER GLU
SEQRES 2 A 382 ILE GLU ARG ARG ARG ARG ASN LYS MET THR ALA TYR ILE
SEQRES 3 A 382 THR GLU LEU SER ASP MET VAL PRO THR CYS SER ALA LEU
SEQRES 4 A 382 ALA ARG LYS PRO ASP LYS LEU THR ILE LEU ARG MET ALA
SEQRES 5 A 382 VAL SER HIS MET LYS SER LEU ARG GLY THR GLY ASN THR
SEQRES 6 A 382 SER THR ASP GLY SER TYR LYS PRO SER PHE LEU THR ASP
SEQRES 7 A 382 GLN GLU LEU LYS HIS LEU ILE LEU GLU ALA ALA ASP GLY
SEQRES 8 A 382 PHE LEU PHE ILE VAL SER CYS GLU THR GLY ARG VAL VAL
SEQRES 9 A 382 TYR VAL SER ASP SER VAL THR PRO VAL LEU ASN GLN PRO
SEQRES 10 A 382 GLN SER GLU TRP PHE GLY SER THR LEU TYR ASP GLN VAL
SEQRES 11 A 382 HIS PRO ASP ASP VAL ASP LYS LEU ARG GLU GLN LEU SER
SEQRES 12 A 382 THR SER GLU ASN ALA LEU THR GLY ARG ILE LEU ASP LEU
SEQRES 13 A 382 LYS THR GLY THR VAL LYS LYS GLU GLY GLN GLN SER SER
SEQRES 14 A 382 MET ARG MET CYS MET GLY SER ARG ARG SER PHE ILE CYS
SEQRES 15 A 382 ARG MET ARG CYS GLY SER SER SER VAL ASP PRO VAL SER
SEQRES 16 A 382 VAL ASN ARG LEU SER PHE VAL ARG ASN ARG CYS ARG ASN
SEQRES 17 A 382 GLY LEU GLY SER VAL LYS ASP GLY GLU PRO HIS PHE VAL
SEQRES 18 A 382 VAL VAL HIS CYS THR GLY TYR ILE LYS ALA TRP PRO PRO
SEQRES 19 A 382 ALA GLY VAL SER LEU PRO ASP ASP ASP PRO GLU ALA GLY
SEQRES 20 A 382 GLN GLY SER LYS PHE CYS LEU VAL ALA ILE GLY ARG LEU
SEQRES 21 A 382 GLN VAL THR SER SER PRO ASN CYS THR ASP MET SER ASN
SEQRES 22 A 382 VAL CYS GLN PRO THR GLU PHE ILE SER ARG HIS ASN ILE
SEQRES 23 A 382 GLU GLY ILE PHE THR PHE VAL ASP HIS ARG CYS VAL ALA
SEQRES 24 A 382 THR VAL GLY TYR GLN PRO GLN GLU LEU LEU GLY LYS ASN
SEQRES 25 A 382 ILE VAL GLU PHE CYS HIS PRO GLU ASP GLN GLN LEU LEU
SEQRES 26 A 382 ARG ASP SER PHE GLN GLN VAL VAL LYS LEU LYS GLY GLN
SEQRES 27 A 382 VAL LEU SER VAL MET PHE ARG PHE ARG SER LYS ASN GLN
SEQRES 28 A 382 GLU TRP LEU TRP MET ARG THR SER SER PHE THR PHE GLN
SEQRES 29 A 382 ASN PRO TYR SER ASP GLU ILE GLU TYR ILE ILE CYS THR
SEQRES 30 A 382 ASN THR ASN VAL LYS
SEQRES 1 B 395 MET ILE PRO ALA GLU GLY ILE LYS SER ASN PRO SER LYS
SEQRES 2 B 395 ARG HIS ARG ASP ARG LEU ASN THR GLU LEU ASP ARG LEU
SEQRES 3 B 395 ALA SER LEU LEU PRO PHE PRO GLN ASP VAL ILE ASN LYS
SEQRES 4 B 395 LEU ASP LYS LEU SER VAL LEU ARG LEU SER VAL SER TYR
SEQRES 5 B 395 LEU ARG ALA LYS SER PHE PHE ASP VAL SER LEU LYS SER
SEQRES 6 B 395 SER PRO ALA ASP ARG ASN GLY VAL GLN ASP ASN CYS ARG
SEQRES 7 B 395 THR LYS PHE ARG GLU GLY LEU ASN LEU GLN GLU GLY GLU
SEQRES 8 B 395 PHE LEU LEU GLN ALA LEU ASN GLY PHE VAL LEU VAL VAL
SEQRES 9 B 395 THR THR ASP ALA LEU VAL PHE TYR ALA SER SER THR ILE
SEQRES 10 B 395 GLN ASP TYR LEU GLY PHE GLN GLN SER ASP VAL ILE HIS
SEQRES 11 B 395 GLN SER VAL TYR GLU LEU ILE HIS THR GLU ASP ARG ALA
SEQRES 12 B 395 GLU PHE GLN ARG GLN LEU HIS TRP ALA LEU ASN PRO SER
SEQRES 13 B 395 GLN CYS PRO ASP SER GLY GLN ARG ILE ASP GLU ALA SER
SEQRES 14 B 395 GLY LEU SER GLN PRO ALA ALA TYR TYR ASN PRO GLU GLN
SEQRES 15 B 395 LEU PRO PRO GLU ASN SER PHE MET GLU ARG CYS PHE VAL
SEQRES 16 B 395 CYS ARG LEU ARG CYS LEU LEU ASP ASN SER SER GLY PHE
SEQRES 17 B 395 LEU ALA MET ASN PHE GLN GLY ARG LEU LYS TYR LEU HIS
SEQRES 18 B 395 GLY GLN ASN LYS LYS GLY LYS ASP GLY SER ILE LEU PRO
SEQRES 19 B 395 PRO GLN LEU ALA LEU PHE ALA ILE ALA THR PRO LEU GLN
SEQRES 20 B 395 PRO PRO SER ILE LEU GLU ILE ARG THR LYS ASN PHE ILE
SEQRES 21 B 395 PHE ARG THR LYS HIS LYS LEU ASP PHE THR PRO THR GLY
SEQRES 22 B 395 CYS ASP ALA LYS GLY LYS ILE VAL LEU GLY TYR THR GLU
SEQRES 23 B 395 ALA GLU LEU CYS MET ARG GLY THR GLY TYR GLN PHE ILE
SEQRES 24 B 395 HIS ALA ALA ASP MET LEU TYR CYS ALA GLU TYR HIS VAL
SEQRES 25 B 395 ARG MET ILE LYS THR GLY GLU SER GLY MET ILE VAL PHE
SEQRES 26 B 395 ARG LEU LEU THR LYS ASP ASN ARG TRP THR TRP VAL GLN
SEQRES 27 B 395 SER ASN ALA ARG LEU VAL TYR LYS ASN GLY ARG PRO ASP
SEQRES 28 B 395 TYR ILE ILE ALA THR GLN ARG PRO LEU THR ASP GLU GLU
SEQRES 29 B 395 GLY LYS GLU HIS LEU ARG LYS ARG THR LEU LYS LEU PRO
SEQRES 30 B 395 PHE MET PHE ALA THR GLY GLU ALA VAL LEU TYR GLU HIS
SEQRES 31 B 395 HIS HIS HIS HIS HIS
SEQRES 1 C 21 DC DA DT DC DG DG DG DC DA DT DC DG DC
SEQRES 2 C 21 DG DT DG DA DC DA DA DG
SEQRES 1 D 21 DG DC DT DT DG DT DC DA DC DG DC DG DA
SEQRES 2 D 21 DT DG DC DC DC DG DA DT
HET JY6 B 501 20
HETNAM JY6 (3~{Z})-3-(3-OXIDANYLIDENE-1~{H}-INDOL-2-YLIDENE)-
HETNAM 2 JY6 1~{H}-INDOL-2-ONE
HETSYN JY6 INDIRUBIN
FORMUL 5 JY6 C16 H10 N2 O2
FORMUL 6 HOH *23(H2 O)
HELIX 1 AA1 ASP A 85 VAL A 116 1 32
HELIX 2 AA2 VAL A 116 ALA A 121 1 6
HELIX 3 AA3 ASP A 127 ARG A 143 1 17
HELIX 4 AA4 THR A 160 ASP A 173 1 14
HELIX 5 AA5 VAL A 193 ASN A 198 1 6
HELIX 6 AA6 PRO A 200 PHE A 205 1 6
HELIX 7 AA7 THR A 208 VAL A 213 1 6
HELIX 8 AA8 HIS A 214 ASP A 216 5 3
HELIX 9 AA9 ASP A 217 SER A 226 1 10
HELIX 10 AB1 ARG A 379 GLY A 385 1 7
HELIX 11 AB2 GLN A 387 LEU A 392 1 6
HELIX 12 AB3 ASN A 395 CYS A 400 5 6
HELIX 13 AB4 HIS A 401 LEU A 418 1 18
HELIX 14 AB5 ASN B 34 LEU B 54 1 21
HELIX 15 AB6 PRO B 57 LYS B 63 1 7
HELIX 16 AB7 ASP B 65 LEU B 87 1 23
HELIX 17 AB8 GLN B 98 ARG B 102 5 5
HELIX 18 AB9 THR B 103 LEU B 111 1 9
HELIX 19 AC1 GLN B 112 LEU B 121 1 10
HELIX 20 AC2 THR B 140 LEU B 145 1 6
HELIX 21 AC3 GLN B 148 ILE B 153 1 6
HELIX 22 AC4 SER B 156 ILE B 161 5 6
HELIX 23 AC5 HIS B 162 HIS B 174 1 13
HELIX 24 AC6 ILE B 278 PHE B 283 5 6
HELIX 25 AC7 ASP B 299 GLY B 307 1 9
HELIX 26 AC8 THR B 309 MET B 315 1 7
HELIX 27 AC9 THR B 318 PHE B 322 5 5
HELIX 28 AD1 ASP B 327 GLY B 342 1 16
HELIX 29 AD2 THR B 385 LYS B 395 1 11
SHEET 1 AA1 5 VAL A 186 VAL A 189 0
SHEET 2 AA1 5 PHE A 175 SER A 180 -1 N ILE A 178 O TYR A 188
SHEET 3 AA1 5 PHE A 335 LEU A 343 -1 O ALA A 339 N PHE A 177
SHEET 4 AA1 5 PHE A 303 ALA A 314 -1 N LYS A 313 O CYS A 336
SHEET 5 AA1 5 ARG A 260 ARG A 268 -1 N ARG A 261 O GLY A 310
SHEET 1 AA2 6 LEU A 423 ARG A 430 0
SHEET 2 AA2 6 TRP A 436 GLN A 447 -1 O THR A 441 N VAL A 425
SHEET 3 AA2 6 ILE A 454 ASN A 463 -1 O GLU A 455 N PHE A 446
SHEET 4 AA2 6 GLU A 362 HIS A 367 -1 N PHE A 363 O ASN A 461
SHEET 5 AA2 6 PHE A 373 ASP A 377 -1 O THR A 374 N ARG A 366
SHEET 6 AA2 6 GLY B 407 ALA B 409 -1 O GLU B 408 N VAL A 376
SHEET 1 AA3 5 VAL B 134 ALA B 137 0
SHEET 2 AA3 5 PHE B 124 THR B 129 -1 N VAL B 127 O TYR B 136
SHEET 3 AA3 5 LEU B 261 PRO B 269 -1 O ALA B 267 N PHE B 124
SHEET 4 AA3 5 PHE B 232 TYR B 243 -1 N LYS B 242 O ALA B 262
SHEET 5 AA3 5 GLU B 215 ARG B 223 -1 N LEU B 222 O LEU B 233
SHEET 1 AA4 5 PRO B 295 CYS B 298 0
SHEET 2 AA4 5 PHE B 285 HIS B 289 -1 N LYS B 288 O THR B 296
SHEET 3 AA4 5 ARG B 373 LEU B 384 -1 O GLN B 381 N PHE B 285
SHEET 4 AA4 5 TRP B 358 LYS B 370 -1 N LYS B 370 O ARG B 373
SHEET 5 AA4 5 ILE B 347 LEU B 352 -1 N LEU B 351 O THR B 359
CISPEP 1 TRP A 315 PRO A 316 0 -0.66
CRYST1 68.100 99.632 80.002 90.00 90.51 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014684 0.000000 0.000130 0.00000
SCALE2 0.000000 0.010037 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012500 0.00000