HEADER VIRAL PROTEIN 08-OCT-02 1MZI TITLE SOLUTION ENSEMBLE STRUCTURES OF HIV-1 GP41 2F5 MAB EPITOPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2F5 EPITOPE OF HIV-1 GP41 FUSION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 13 RESIDUES 2F5 EPITOPE; COMPND 5 SYNONYM: ENVELOPE POLYPROTEIN GP160; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: GP160 HIV-1 HBX2 ISOLATE AMINO ACIDS 659-671 KEYWDS ENSEMBLE, STATISTICS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 81 AUTHOR G.BARBATO,E.BIANCHI,P.INGALLINELLA,W.H.HURNI,M.D.MILLER,G.CILIBERTO, AUTHOR 2 R.CORTESE,R.BAZZO,J.W.SHIVER,A.PESSI REVDAT 4 29-MAY-24 1MZI 1 REMARK REVDAT 3 23-FEB-22 1MZI 1 REMARK REVDAT 2 24-FEB-09 1MZI 1 VERSN REVDAT 1 02-SEP-03 1MZI 0 JRNL AUTH G.BARBATO,E.BIANCHI,P.INGALLINELLA,W.H.HURNI,M.D.MILLER, JRNL AUTH 2 G.CILIBERTO,R.CORTESE,R.BAZZO,J.W.SHIVER,A.PESSI JRNL TITL STRUCTURAL ANALYSIS OF THE EPITOPE OF THE ANTI-HIV ANTIBODY JRNL TITL 2 2F5 SHEDS LIGHT INTO ITS MECHANISM OF NEUTRALIZATION AND HIV JRNL TITL 3 FUSION. JRNL REF J.MOL.BIOL. V. 330 1101 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12860131 JRNL DOI 10.1016/S0022-2836(03)00611-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.BRUSCHWEILER,M.BLACKLEDGE,R.R.ERNST REMARK 1 TITL MULTI-CONFORMATIONAL PEPTIDE DYNAMICS DERIVED FROM NMR DATA: REMARK 1 TITL 2 A NEW SEARCH ALGORITHM AND ITS APPLICATION TO ANTAMANIDE REMARK 1 REF J.BIOMOL.NMR V. 1 3 1991 REMARK 1 REFN ISSN 0925-2738 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.O.CICERO,G.BARBATO,R.BAZZO REMARK 1 TITL NMR ANALYSIS OF MOLECULAR FLEXIBILITY IN SOLUTION: A NEW REMARK 1 TITL 2 METHOD FOR THE STUDY OF COMPLEX DISTRIBUTIONS OF RAPIDLY REMARK 1 TITL 3 EXCHANGING CONFORMATIONS. APPLICATION TO A 13-RESIDUE REMARK 1 TITL 4 PEPTIDE WITH AN 8-RESIDUE LOOP REMARK 1 REF J.AM.CHEM.SOC. V. 117 1027 1995 REMARK 1 REFN ISSN 0002-7863 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.A.KELLEY,S.P.GARDNER,M.J.SUTCLIFFE REMARK 1 TITL AN AUTOMATED APPROACH FOR CLUSTERING AN ENSEMBLE OF REMARK 1 TITL 2 NMR-DERIVED PROTEIN STRUCTURES INTO CONFORMATIONALLY RELATED REMARK 1 TITL 3 SUBFAMILIES REMARK 1 REF PROTEIN ENG. V. 9 1063 1996 REMARK 1 REFN ISSN 0269-2139 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2001, DGII MSI, NAMFIS 1.0, MEDUSA IN REMARK 3 HOME, NMRCLUST 1.2 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), MSI, INC (DGII), CICERO D. REMARK 3 (NAMFIS), BRUSHWEILER R. (MEDUSA), KELLEY REMARK 3 (NMRCLUST) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MZI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017332. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM PEPTIDE, 50MM PHOSPHATE REMARK 210 BUFFER, PH 6.5; 1.5MM PEPTIDE, REMARK 210 50MM PHOSPHATE BUFFER, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; PE-COSY; REMARK 210 HSQC (1H-13C)-DIPSI-2(1H); HMQC REMARK 210 (1H-15N) JR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 2001 REMARK 210 METHOD USED : ENSEMBLE GENERATION WITH MEDUSA, REMARK 210 CLUSTERING ANALYSIS WITH REMARK 210 NMRCLUST, STATISTICAL ANALYSIS REMARK 210 OF THE ENSEMBLE WITH NAMFIS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 6400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 81 REMARK 210 CONFORMERS, SELECTION CRITERIA : BASE SET ENSEMBLE REPRESENTATIVE REMARK 210 OF THE CONFORMATIONAL SPACE REMARK 210 EXPERIMENTALLY ALLOWED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: DISTANCE RESTRAINTS WERE DETERMINED USING NOESY BUILD-UP REMARK 210 CURVES. THE COUPLING CONSTANTS WERE DETERMINED USING PHASE REMARK 210 SENSITIVE COSY AND TOCSY EXPERIMENTS. E THRESHOLD CUTOFF AND REMARK 210 DELTAE ALLOWANCE FOR MEDUSA WERE 600 AND 100 KCAL/MOL REMARK 210 RESPECTIVELY CLUSTERING WAS PERFORMED WITH A CUTOFF OF REMARK 210 1.0ANGSTROM A CONFORMER WAS DEFINED AS DIFFERENT IF EITHER PHI REMARK 210 OR PSI ANGLE FOR AT LEAST ONE AMINOACID WAS DIFFERING BY >15 REMARK 210 DEGREES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA ASP A 6 H LYS A 7 1.35 REMARK 500 C ASP A 6 H LYS A 7 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 LYS A 7 N LYS A 7 CA 0.135 REMARK 500 1 ALA A 9 CA ALA A 9 CB 0.207 REMARK 500 4 ALA A 9 CA ALA A 9 CB 0.204 REMARK 500 27 ALA A 9 CA ALA A 9 CB 0.261 REMARK 500 37 ALA A 9 CA ALA A 9 CB 0.222 REMARK 500 49 ALA A 9 CA ALA A 9 CB 0.230 REMARK 500 63 ALA A 9 CA ALA A 9 CB 0.199 REMARK 500 64 ALA A 9 CA ALA A 9 CB 0.194 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TRP A 12 CD1 - NE1 - CE2 ANGL. DEV. = -6.0 DEGREES REMARK 500 4 ASP A 6 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 4 TRP A 8 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 6 ALA A 9 N - CA - CB ANGL. DEV. = -8.9 DEGREES REMARK 500 7 LEU A 3 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 7 ASP A 6 N - CA - CB ANGL. DEV. = 21.6 DEGREES REMARK 500 12 ALA A 9 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 12 SER A 10 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 14 GLU A 1 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 14 LEU A 2 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 14 ASP A 6 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 14 TRP A 8 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 14 TRP A 8 CD1 - NE1 - CE2 ANGL. DEV. = -5.4 DEGREES REMARK 500 14 ALA A 9 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 15 TRP A 12 CB - CG - CD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 17 LEU A 11 CA - C - N ANGL. DEV. = 19.5 DEGREES REMARK 500 17 LEU A 11 O - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 18 ALA A 9 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 18 TRP A 12 CB - CA - C ANGL. DEV. = 24.2 DEGREES REMARK 500 22 GLU A 1 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 22 TRP A 8 CB - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 22 TRP A 8 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 22 ALA A 9 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 22 LEU A 11 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 23 ALA A 9 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 24 SER A 10 CB - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 27 TRP A 8 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 27 TRP A 8 CB - CG - CD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 27 ALA A 9 CB - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 27 LEU A 11 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 27 TRP A 12 CB - CG - CD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 27 TRP A 12 CB - CG - CD1 ANGL. DEV. = -8.6 DEGREES REMARK 500 27 TRP A 12 CD1 - NE1 - CE2 ANGL. DEV. = -5.7 DEGREES REMARK 500 28 ALA A 9 N - CA - CB ANGL. DEV. = -9.8 DEGREES REMARK 500 28 LEU A 11 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 28 LEU A 11 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 28 TRP A 12 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 28 TRP A 12 CA - CB - CG ANGL. DEV. = 12.9 DEGREES REMARK 500 29 TRP A 8 CB - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 29 TRP A 8 CD1 - NE1 - CE2 ANGL. DEV. = -5.5 DEGREES REMARK 500 29 ALA A 9 N - CA - CB ANGL. DEV. = -10.3 DEGREES REMARK 500 30 LEU A 5 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 30 ASP A 6 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 30 TRP A 12 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 31 LEU A 3 CB - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 31 LEU A 5 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 31 TRP A 12 CB - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 33 ALA A 9 N - CA - CB ANGL. DEV. = -10.4 DEGREES REMARK 500 35 LYS A 7 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 35 TRP A 8 CB - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 91 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 90.99 53.24 REMARK 500 1 LEU A 3 56.74 25.92 REMARK 500 1 GLU A 4 -61.70 104.70 REMARK 500 1 LEU A 5 86.04 41.03 REMARK 500 1 ASP A 6 93.46 -24.42 REMARK 500 1 LYS A 7 65.28 85.16 REMARK 500 1 TRP A 8 76.81 56.35 REMARK 500 1 ALA A 9 79.03 31.79 REMARK 500 1 SER A 10 -112.12 51.49 REMARK 500 2 SER A 10 -93.47 -78.61 REMARK 500 2 LEU A 11 -146.78 47.05 REMARK 500 3 ASP A 6 -76.60 -174.65 REMARK 500 4 LEU A 3 168.98 54.89 REMARK 500 4 LEU A 5 173.38 66.13 REMARK 500 4 LYS A 7 -133.44 -72.86 REMARK 500 4 ALA A 9 150.66 156.55 REMARK 500 5 LEU A 2 87.44 74.54 REMARK 500 5 GLU A 4 -62.27 -159.60 REMARK 500 5 ASP A 6 -76.78 44.08 REMARK 500 5 ALA A 9 -166.73 66.61 REMARK 500 5 SER A 10 -72.04 75.67 REMARK 500 5 LEU A 11 -30.40 -135.31 REMARK 500 6 LEU A 2 -116.29 -98.44 REMARK 500 6 ASP A 6 86.94 51.08 REMARK 500 6 SER A 10 -51.07 -123.30 REMARK 500 7 LEU A 2 -128.21 -97.45 REMARK 500 7 LEU A 3 -103.01 70.05 REMARK 500 7 GLU A 4 107.73 -30.33 REMARK 500 7 LEU A 5 111.35 22.10 REMARK 500 7 LYS A 7 172.56 -50.89 REMARK 500 7 TRP A 8 -75.67 68.76 REMARK 500 7 ALA A 9 -146.54 -95.15 REMARK 500 7 SER A 10 34.91 -174.04 REMARK 500 8 LYS A 7 -67.88 15.29 REMARK 500 8 TRP A 12 49.48 23.39 REMARK 500 9 ASP A 6 -64.68 -171.68 REMARK 500 9 LYS A 7 -104.07 -151.86 REMARK 500 10 GLU A 4 133.45 62.64 REMARK 500 10 ASP A 6 -76.86 -168.83 REMARK 500 11 ASP A 6 77.79 -169.00 REMARK 500 11 SER A 10 38.71 -95.87 REMARK 500 12 LEU A 3 142.59 74.20 REMARK 500 12 GLU A 4 -67.68 72.77 REMARK 500 12 ASP A 6 -98.57 -109.05 REMARK 500 12 LYS A 7 -156.75 63.78 REMARK 500 12 ALA A 9 -118.07 -93.47 REMARK 500 12 SER A 10 -36.58 37.73 REMARK 500 12 LEU A 11 -100.60 -77.67 REMARK 500 13 LYS A 7 89.74 22.17 REMARK 500 13 TRP A 8 -31.92 60.24 REMARK 500 REMARK 500 THIS ENTRY HAS 417 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 4 LEU A 5 1 -102.69 REMARK 500 ASP A 6 LYS A 7 1 146.36 REMARK 500 LEU A 11 TRP A 12 2 130.85 REMARK 500 GLU A 4 LEU A 5 4 -90.34 REMARK 500 ASP A 6 LYS A 7 4 128.75 REMARK 500 LYS A 7 TRP A 8 4 143.40 REMARK 500 LEU A 5 ASP A 6 5 100.37 REMARK 500 LEU A 3 GLU A 4 7 -136.42 REMARK 500 GLU A 4 LEU A 5 7 -131.36 REMARK 500 ASP A 6 LYS A 7 7 141.71 REMARK 500 ALA A 9 SER A 10 7 -149.34 REMARK 500 TRP A 8 ALA A 9 12 142.94 REMARK 500 ALA A 9 SER A 10 12 -146.94 REMARK 500 GLU A 4 LEU A 5 14 123.21 REMARK 500 TRP A 8 ALA A 9 14 137.66 REMARK 500 SER A 10 LEU A 11 14 -125.47 REMARK 500 LEU A 11 TRP A 12 16 -89.75 REMARK 500 SER A 10 LEU A 11 17 -143.97 REMARK 500 LYS A 7 TRP A 8 18 -127.56 REMARK 500 TRP A 12 ASN A 13 20 -149.13 REMARK 500 GLU A 4 LEU A 5 22 142.23 REMARK 500 ASP A 6 LYS A 7 22 -148.60 REMARK 500 SER A 10 LEU A 11 26 -135.54 REMARK 500 GLU A 4 LEU A 5 27 33.33 REMARK 500 ASP A 6 LYS A 7 27 -141.75 REMARK 500 TRP A 8 ALA A 9 27 -147.97 REMARK 500 ALA A 9 SER A 10 27 -149.93 REMARK 500 SER A 10 LEU A 11 27 -137.14 REMARK 500 SER A 10 LEU A 11 28 -142.41 REMARK 500 SER A 10 LEU A 11 29 -142.43 REMARK 500 GLU A 4 LEU A 5 30 -42.65 REMARK 500 ASP A 6 LYS A 7 30 92.56 REMARK 500 SER A 10 LEU A 11 30 -135.49 REMARK 500 TRP A 12 ASN A 13 30 -145.75 REMARK 500 GLU A 4 LEU A 5 31 -139.31 REMARK 500 TRP A 12 ASN A 13 31 -81.99 REMARK 500 LEU A 2 LEU A 3 34 103.20 REMARK 500 LYS A 7 TRP A 8 34 136.88 REMARK 500 LYS A 7 TRP A 8 35 143.42 REMARK 500 TRP A 8 ALA A 9 35 130.43 REMARK 500 GLU A 4 LEU A 5 37 -129.10 REMARK 500 ASP A 6 LYS A 7 37 141.91 REMARK 500 ALA A 9 SER A 10 38 113.78 REMARK 500 SER A 10 LEU A 11 38 -146.98 REMARK 500 LEU A 3 GLU A 4 39 -122.32 REMARK 500 GLU A 4 LEU A 5 39 -60.87 REMARK 500 ASP A 6 LYS A 7 39 -123.23 REMARK 500 LYS A 7 TRP A 8 39 95.15 REMARK 500 LEU A 11 TRP A 12 40 123.50 REMARK 500 TRP A 8 ALA A 9 41 122.39 REMARK 500 REMARK 500 THIS ENTRY HAS 105 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 17 ASN A 13 0.07 SIDE CHAIN REMARK 500 22 ASN A 13 0.08 SIDE CHAIN REMARK 500 29 ASN A 13 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MZI A 1 13 UNP P04578 ENV_HV1H2 659 671 SEQRES 1 A 13 GLU LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN CISPEP 1 GLU A 1 LEU A 2 5 -2.33 CISPEP 2 LEU A 2 LEU A 3 5 -29.47 CISPEP 3 TRP A 8 ALA A 9 5 -26.51 CISPEP 4 TRP A 12 ASN A 13 5 2.98 CISPEP 5 TRP A 12 ASN A 13 6 -10.71 CISPEP 6 GLU A 1 LEU A 2 7 -11.32 CISPEP 7 GLU A 1 LEU A 2 14 4.72 CISPEP 8 LEU A 2 LEU A 3 14 -2.80 CISPEP 9 LEU A 11 TRP A 12 17 9.49 CISPEP 10 GLU A 1 LEU A 2 22 0.17 CISPEP 11 LEU A 2 LEU A 3 22 22.40 CISPEP 12 TRP A 12 ASN A 13 22 -12.31 CISPEP 13 LEU A 5 ASP A 6 30 4.22 CISPEP 14 GLU A 4 LEU A 5 32 27.92 CISPEP 15 GLU A 4 LEU A 5 34 -12.66 CISPEP 16 GLU A 1 LEU A 2 35 0.75 CISPEP 17 LEU A 2 LEU A 3 35 9.69 CISPEP 18 GLU A 1 LEU A 2 39 -12.44 CISPEP 19 LEU A 2 LEU A 3 39 0.00 CISPEP 20 GLU A 1 LEU A 2 42 4.87 CISPEP 21 GLU A 1 LEU A 2 43 1.11 CISPEP 22 LEU A 2 LEU A 3 43 21.58 CISPEP 23 GLU A 4 LEU A 5 44 -28.20 CISPEP 24 LEU A 2 LEU A 3 48 -2.16 CISPEP 25 GLU A 1 LEU A 2 51 -4.71 CISPEP 26 LEU A 2 LEU A 3 51 21.97 CISPEP 27 GLU A 4 LEU A 5 52 17.95 CISPEP 28 GLU A 4 LEU A 5 53 -13.55 CISPEP 29 GLU A 1 LEU A 2 54 0.92 CISPEP 30 LEU A 2 LEU A 3 54 1.15 CISPEP 31 ASP A 6 LYS A 7 54 4.13 CISPEP 32 TRP A 12 ASN A 13 55 -29.53 CISPEP 33 LEU A 11 TRP A 12 57 17.09 CISPEP 34 GLU A 4 LEU A 5 59 -6.98 CISPEP 35 LEU A 2 LEU A 3 60 -10.52 CISPEP 36 LEU A 2 LEU A 3 66 -3.25 CISPEP 37 TRP A 12 ASN A 13 66 -1.62 CISPEP 38 GLU A 1 LEU A 2 67 0.31 CISPEP 39 LEU A 2 LEU A 3 67 8.80 CISPEP 40 LEU A 2 LEU A 3 72 8.23 CISPEP 41 GLU A 1 LEU A 2 73 -1.97 CISPEP 42 GLU A 1 LEU A 2 75 -1.36 CISPEP 43 LEU A 2 LEU A 3 75 13.53 CISPEP 44 GLU A 1 LEU A 2 76 -0.97 CISPEP 45 LEU A 2 LEU A 3 76 14.07 CISPEP 46 LEU A 11 TRP A 12 77 2.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20 MODEL 21 MODEL 22 MODEL 23 MODEL 24 MODEL 25 MODEL 26 MODEL 27 MODEL 28 MODEL 29 MODEL 30 MODEL 31 MODEL 32 MODEL 33 MODEL 34 MODEL 35 MODEL 36 MODEL 37 MODEL 38 MODEL 39 MODEL 40 MODEL 41 MODEL 42 MODEL 43 MODEL 44 MODEL 45 MODEL 46 MODEL 47 MODEL 48 MODEL 49 MODEL 50 MODEL 51 MODEL 52 MODEL 53 MODEL 54 MODEL 55 MODEL 56 MODEL 57 MODEL 58 MODEL 59 MODEL 60 MODEL 61 MODEL 62 MODEL 63 MODEL 64 MODEL 65 MODEL 66 MODEL 67 MODEL 68 MODEL 69 MODEL 70 MODEL 71 MODEL 72 MODEL 73 MODEL 74 MODEL 75 MODEL 76 MODEL 77 MODEL 78 MODEL 79 MODEL 80 MODEL 81