HEADER STRUCTURAL PROTEIN 04-JUL-05 2BVU TITLE D83R MUTANT OF ASARIS SUUM MAJOR SPERM PROTEIN (MSP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR SPERM PROTEIN, ISOFORM ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ALPHA-MSP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASCARIS SUUM; SOURCE 3 ORGANISM_COMMON: PIG ROUNDWORM; SOURCE 4 ORGANISM_TAXID: 6253; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PET; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET13 KEYWDS CYTOSKETAL PROTEIN, MAJOR SPERM PROTEIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.STEWART,R.P.GRANT,T.M.ROBERTS REVDAT 4 05-JUL-17 2BVU 1 REMARK REVDAT 3 24-FEB-09 2BVU 1 VERSN REVDAT 2 15-APR-08 2BVU 1 VERSN HEADER KEYWDS JRNL REVDAT 1 25-OCT-06 2BVU 0 JRNL AUTH L.MIAO,O.VANDERLINDE,J.LIU,R.P.GRANT,A.WOUTERSE, JRNL AUTH 2 K.SHIMABUKURO,A.PHILIPSE,M.STEWART,T.M.ROBERTS JRNL TITL THE ROLE OF FILAMENT-PACKING DYNAMICS IN POWERING AMOEBOID JRNL TITL 2 CELL MOTILITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 5390 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18385381 JRNL DOI 10.1073/PNAS.0708416105 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 22317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1221 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1286 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3950 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -2.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.466 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3921 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3500 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5341 ; 1.505 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8132 ; 0.702 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 7.264 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;37.197 ;24.157 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;18.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.314 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4383 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 769 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 864 ; 0.234 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3755 ; 0.227 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1834 ; 0.193 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2505 ; 0.098 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.241 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 5 ; 0.102 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.327 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 90 ; 0.292 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.369 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2543 ; 3.531 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 990 ; 0.569 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3997 ; 5.408 ;10.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1609 ; 6.464 ;10.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1344 ; 9.039 ;20.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2BVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1290024714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17093 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1GRW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 5 MG/ML; 15% PEG4000; 0.1M REMARK 280 AMMONIUM ACETATE (PH 5.9); 2% AMMONIUM SULPHATE; 10 MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 226.57000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.40250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.40250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.28500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.40250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.40250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 339.85500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.40250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.40250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 113.28500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.40250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.40250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 339.85500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 226.57000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 83 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 83 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ASP 83 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN D, ASP 83 TO ARG REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 ALA B 1 REMARK 465 GLN B 2 REMARK 465 SER B 3 REMARK 465 ALA C 1 REMARK 465 GLN C 2 REMARK 465 SER C 3 REMARK 465 ALA D 1 REMARK 465 GLN D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 39 NH1 NH2 REMARK 470 LYS A 65 CD CE NZ REMARK 470 ARG A 88 CZ NH1 NH2 REMARK 470 GLN A 103 CD OE1 NE2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 GLU B 92 CD OE1 OE2 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 ARG C 39 CD NE CZ NH1 NH2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 MET C 50 CG SD CE REMARK 470 LYS C 65 CE NZ REMARK 470 ASN C 86 CG OD1 ND2 REMARK 470 ARG C 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 26 CE NZ REMARK 470 LYS D 46 NZ REMARK 470 GLU D 82 CG CD OE1 OE2 REMARK 470 ASN D 86 CG OD1 ND2 REMARK 470 ARG D 105 CZ NH1 NH2 REMARK 470 ARG D 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 107 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA C 80 O HOH C 2012 2.06 REMARK 500 O ASN A 85 O HOH A 2042 2.07 REMARK 500 O PRO C 22 O HOH C 2002 2.11 REMARK 500 O PRO D 64 O HOH D 2020 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP C 56 OD1 ASP C 56 7555 2.17 REMARK 500 O GLN A 110 ND2 ASN D 119 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 65 -17.90 72.79 REMARK 500 TYR B 23 41.90 -102.29 REMARK 500 ASN B 49 73.88 -165.78 REMARK 500 LYS B 65 9.44 57.47 REMARK 500 ALA B 101 -175.32 -69.57 REMARK 500 LYS B 102 77.11 -113.82 REMARK 500 TYR C 23 51.32 -115.74 REMARK 500 ASP C 56 114.97 -160.39 REMARK 500 ASP C 63 177.42 -57.02 REMARK 500 LYS C 65 -11.72 74.74 REMARK 500 THR C 94 158.11 179.17 REMARK 500 PRO C 97 135.17 -39.27 REMARK 500 ASP C 98 102.28 -34.86 REMARK 500 LYS C 102 54.03 -106.57 REMARK 500 ASP D 56 106.81 -164.01 REMARK 500 LYS D 65 -10.43 62.69 REMARK 500 PHE D 77 148.63 -178.41 REMARK 500 THR D 81 -75.54 -59.16 REMARK 500 LEU D 84 -21.87 -145.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 84 ASN B 85 -148.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MSP RELATED DB: PDB REMARK 900 MAJOR SPERM PROTEIN, ALPHA ISOFORM ( RECOMBINANT), PH 4.6 REMARK 900 RELATED ID: 3MSP RELATED DB: PDB REMARK 900 MOTILE MAJOR SPERM PROTEIN (MSP) OF ASCARIS SUUM, NMR,20 STRUCTURES DBREF 2BVU A 1 126 UNP P27439 MSP1_ASCSU 1 126 DBREF 2BVU B 1 126 UNP P27439 MSP1_ASCSU 1 126 DBREF 2BVU C 1 126 UNP P27439 MSP1_ASCSU 1 126 DBREF 2BVU D 1 126 UNP P27439 MSP1_ASCSU 1 126 SEQADV 2BVU ARG A 83 UNP P27439 ASP 83 ENGINEERED MUTATION SEQADV 2BVU ARG B 83 UNP P27439 ASP 83 ENGINEERED MUTATION SEQADV 2BVU ARG C 83 UNP P27439 ASP 83 ENGINEERED MUTATION SEQADV 2BVU ARG D 83 UNP P27439 ASP 83 ENGINEERED MUTATION SEQRES 1 A 126 ALA GLN SER VAL PRO PRO GLY ASP ILE ASN THR GLN PRO SEQRES 2 A 126 SER GLN LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 A 126 HIS THR TYR HIS ILE LYS ILE THR ASN ALA GLY GLY ARG SEQRES 4 A 126 ARG ILE GLY TRP ALA ILE LYS THR THR ASN MET ARG ARG SEQRES 5 A 126 LEU SER VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 A 126 GLU LYS VAL LEU MET ALA VAL SER CYS ASP THR PHE ASN SEQRES 7 A 126 ALA ALA THR GLU ARG LEU ASN ASN ASP ARG ILE THR ILE SEQRES 8 A 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 A 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 A 126 LYS ASN LEU PRO ILE GLU TYR ASN LEU SEQRES 1 B 126 ALA GLN SER VAL PRO PRO GLY ASP ILE ASN THR GLN PRO SEQRES 2 B 126 SER GLN LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 B 126 HIS THR TYR HIS ILE LYS ILE THR ASN ALA GLY GLY ARG SEQRES 4 B 126 ARG ILE GLY TRP ALA ILE LYS THR THR ASN MET ARG ARG SEQRES 5 B 126 LEU SER VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 B 126 GLU LYS VAL LEU MET ALA VAL SER CYS ASP THR PHE ASN SEQRES 7 B 126 ALA ALA THR GLU ARG LEU ASN ASN ASP ARG ILE THR ILE SEQRES 8 B 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 B 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 B 126 LYS ASN LEU PRO ILE GLU TYR ASN LEU SEQRES 1 C 126 ALA GLN SER VAL PRO PRO GLY ASP ILE ASN THR GLN PRO SEQRES 2 C 126 SER GLN LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 C 126 HIS THR TYR HIS ILE LYS ILE THR ASN ALA GLY GLY ARG SEQRES 4 C 126 ARG ILE GLY TRP ALA ILE LYS THR THR ASN MET ARG ARG SEQRES 5 C 126 LEU SER VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 C 126 GLU LYS VAL LEU MET ALA VAL SER CYS ASP THR PHE ASN SEQRES 7 C 126 ALA ALA THR GLU ARG LEU ASN ASN ASP ARG ILE THR ILE SEQRES 8 C 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 C 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 C 126 LYS ASN LEU PRO ILE GLU TYR ASN LEU SEQRES 1 D 126 ALA GLN SER VAL PRO PRO GLY ASP ILE ASN THR GLN PRO SEQRES 2 D 126 SER GLN LYS ILE VAL PHE ASN ALA PRO TYR ASP ASP LYS SEQRES 3 D 126 HIS THR TYR HIS ILE LYS ILE THR ASN ALA GLY GLY ARG SEQRES 4 D 126 ARG ILE GLY TRP ALA ILE LYS THR THR ASN MET ARG ARG SEQRES 5 D 126 LEU SER VAL ASP PRO PRO CYS GLY VAL LEU ASP PRO LYS SEQRES 6 D 126 GLU LYS VAL LEU MET ALA VAL SER CYS ASP THR PHE ASN SEQRES 7 D 126 ALA ALA THR GLU ARG LEU ASN ASN ASP ARG ILE THR ILE SEQRES 8 D 126 GLU TRP THR ASN THR PRO ASP GLY ALA ALA LYS GLN PHE SEQRES 9 D 126 ARG ARG GLU TRP PHE GLN GLY ASP GLY MET VAL ARG ARG SEQRES 10 D 126 LYS ASN LEU PRO ILE GLU TYR ASN LEU FORMUL 5 HOH *152(H2 O) HELIX 1 1 ARG A 105 PHE A 109 5 5 HELIX 2 2 ARG B 106 GLY B 111 1 6 HELIX 3 3 ARG C 105 GLN C 110 5 6 HELIX 4 4 ARG D 106 GLY D 111 1 6 SHEET 1 AA 4 ILE A 9 GLN A 12 0 SHEET 2 AA 4 HIS A 27 ASN A 35 -1 O LYS A 32 N GLN A 12 SHEET 3 AA 4 LYS A 67 CYS A 74 -1 O VAL A 68 N ILE A 33 SHEET 4 AA 4 LEU A 53 ASP A 56 -1 O SER A 54 N SER A 73 SHEET 1 AB 5 ILE A 17 ASN A 20 0 SHEET 2 AB 5 ARG A 116 ASN A 125 1 O PRO A 121 N ILE A 17 SHEET 3 AB 5 ARG A 88 ASN A 95 -1 O ILE A 89 N LEU A 120 SHEET 4 AB 5 ILE A 41 THR A 47 -1 O GLY A 42 N THR A 94 SHEET 5 AB 5 CYS A 59 LEU A 62 -1 O GLY A 60 N TRP A 43 SHEET 1 BA 4 ILE B 9 GLN B 12 0 SHEET 2 BA 4 HIS B 27 ASN B 35 -1 O LYS B 32 N GLN B 12 SHEET 3 BA 4 LYS B 67 CYS B 74 -1 O VAL B 68 N ILE B 33 SHEET 4 BA 4 LEU B 53 ASP B 56 -1 O SER B 54 N SER B 73 SHEET 1 BB 5 ILE B 17 ASN B 20 0 SHEET 2 BB 5 GLY B 113 ASN B 125 1 O PRO B 121 N ILE B 17 SHEET 3 BB 5 ARG B 88 ASN B 95 -1 O ILE B 89 N LEU B 120 SHEET 4 BB 5 ILE B 41 THR B 47 -1 O GLY B 42 N THR B 94 SHEET 5 BB 5 CYS B 59 LEU B 62 -1 O GLY B 60 N TRP B 43 SHEET 1 BC 3 ILE B 17 ASN B 20 0 SHEET 2 BC 3 GLY B 113 ASN B 125 1 O PRO B 121 N ILE B 17 SHEET 3 BC 3 MET C 114 ASN C 125 -1 O VAL C 115 N VAL B 115 SHEET 1 CA 4 ILE C 9 GLN C 12 0 SHEET 2 CA 4 HIS C 27 ASN C 35 -1 O LYS C 32 N GLN C 12 SHEET 3 CA 4 LYS C 67 CYS C 74 -1 O VAL C 68 N ILE C 33 SHEET 4 CA 4 LEU C 53 ASP C 56 -1 O SER C 54 N SER C 73 SHEET 1 DA 4 ILE D 9 GLN D 12 0 SHEET 2 DA 4 HIS D 27 ASN D 35 -1 O LYS D 32 N GLN D 12 SHEET 3 DA 4 LYS D 67 CYS D 74 -1 O VAL D 68 N ILE D 33 SHEET 4 DA 4 LEU D 53 SER D 54 -1 O SER D 54 N SER D 73 SHEET 1 DB 5 ILE D 17 ASN D 20 0 SHEET 2 DB 5 ARG D 116 ASN D 125 1 O PRO D 121 N ILE D 17 SHEET 3 DB 5 ARG D 88 ASN D 95 -1 O ILE D 89 N LEU D 120 SHEET 4 DB 5 ILE D 41 THR D 47 -1 O GLY D 42 N THR D 94 SHEET 5 DB 5 CYS D 59 LEU D 62 -1 O GLY D 60 N TRP D 43 CISPEP 1 GLN A 12 PRO A 13 0 -0.96 CISPEP 2 ALA A 21 PRO A 22 0 4.28 CISPEP 3 ASP A 56 PRO A 57 0 -1.87 CISPEP 4 GLN B 12 PRO B 13 0 -0.58 CISPEP 5 ALA B 21 PRO B 22 0 6.41 CISPEP 6 ASP B 56 PRO B 57 0 -1.52 CISPEP 7 GLN C 12 PRO C 13 0 -4.19 CISPEP 8 ALA C 21 PRO C 22 0 4.81 CISPEP 9 ASP C 56 PRO C 57 0 -6.69 CISPEP 10 GLN D 12 PRO D 13 0 0.86 CISPEP 11 ALA D 21 PRO D 22 0 2.80 CISPEP 12 ASP D 56 PRO D 57 0 0.58 CRYST1 54.805 54.805 453.140 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002207 0.00000