HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-OCT-06 2E1O TITLE SOLUTION STRUCTURE OF RSGI RUH-028, A HOMEOBOX DOMAIN FROM HUMAN CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN PRH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX DOMAIN; COMPND 5 SYNONYM: HEMATOPOIETICALLY EXPRESSED HOMEOBOX, HOMEOBOX PROTEIN HEX; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HHEX, HEX, PRH, PRHX; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P040315-39; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DNA BINDING PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.NAKAMURA,S.OHNISHI,T.ABE,N.NAMEKI,N.TOCHIO,S.KOSHIBA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,S.KAWAII,H.HIROTA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2E1O 1 REMARK REVDAT 3 09-MAR-22 2E1O 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E1O 1 VERSN REVDAT 1 14-NOV-06 2E1O 0 SPRSDE 14-NOV-06 2E1O 1WQI JRNL AUTH A.NAKAMURA,S.OHNISHI,T.ABE,N.NAMEKI,N.TOCHIO,S.KOSHIBA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA,S.KAWAII,H.HIROTA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-028, A HOMEOBOX DOMAIN FROM JRNL TITL 2 HUMAN CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E1O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026114. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.92MM RSGI RUH-028 U-15N,13C, REMARK 210 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2003.316.09.03, NMRVIEW REMARK 210 5.0.4, KUJIRA 2.0.172 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 145.76 -35.17 REMARK 500 1 LYS A 8 38.03 39.32 REMARK 500 1 GLN A 11 41.98 -95.75 REMARK 500 1 ARG A 37 -37.50 -33.88 REMARK 500 1 SER A 68 98.79 -34.44 REMARK 500 2 LYS A 24 -26.23 -39.03 REMARK 500 2 GLN A 29 115.09 -162.02 REMARK 500 2 ARG A 37 -34.38 -34.23 REMARK 500 2 GLU A 48 -36.92 -39.57 REMARK 500 2 ALA A 60 -38.07 -38.73 REMARK 500 3 LYS A 8 105.45 -36.89 REMARK 500 3 LYS A 24 -26.24 -39.84 REMARK 500 3 ARG A 37 -39.78 -35.14 REMARK 500 4 SER A 3 42.26 -100.59 REMARK 500 4 LYS A 8 159.38 -43.67 REMARK 500 4 LEU A 22 -31.77 -37.85 REMARK 500 4 ARG A 37 -33.04 -34.48 REMARK 500 4 ALA A 60 -39.35 -38.47 REMARK 500 5 LYS A 24 -29.37 -36.88 REMARK 500 5 ARG A 37 -33.00 -34.73 REMARK 500 6 SER A 3 -60.08 -90.81 REMARK 500 6 ARG A 37 -38.46 -35.77 REMARK 500 6 SER A 68 116.89 -162.82 REMARK 500 7 ARG A 37 -34.09 -34.32 REMARK 500 7 PRO A 67 88.65 -69.68 REMARK 500 8 SER A 2 82.89 -68.72 REMARK 500 8 SER A 6 122.10 -170.23 REMARK 500 8 LEU A 22 -28.20 -38.37 REMARK 500 8 ARG A 37 -34.32 -34.13 REMARK 500 8 GLN A 45 41.14 71.35 REMARK 500 8 PRO A 67 -177.48 -69.71 REMARK 500 8 SER A 69 115.01 -170.06 REMARK 500 9 SER A 15 173.43 -55.42 REMARK 500 9 ARG A 37 -37.17 -34.09 REMARK 500 9 SER A 68 -59.10 -125.49 REMARK 500 10 GLN A 11 86.77 -51.83 REMARK 500 10 LEU A 22 -35.55 -37.89 REMARK 500 10 ARG A 37 -34.27 -34.92 REMARK 500 10 SER A 68 -52.98 -126.77 REMARK 500 11 LEU A 22 -38.85 -37.33 REMARK 500 11 ALA A 60 -36.98 -38.79 REMARK 500 11 SER A 68 139.77 -39.15 REMARK 500 12 SER A 5 108.47 -161.15 REMARK 500 12 LEU A 22 -33.84 -38.85 REMARK 500 12 ARG A 37 -39.16 -35.19 REMARK 500 13 LEU A 22 -34.14 -35.98 REMARK 500 13 ARG A 37 -33.28 -34.90 REMARK 500 13 SER A 68 174.24 -51.87 REMARK 500 14 ARG A 37 -35.93 -34.32 REMARK 500 14 PRO A 67 82.37 -69.73 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000069.1 RELATED DB: TARGETDB DBREF 2E1O A 8 64 UNP Q03014 HHEX_HUMAN 138 194 SEQADV 2E1O GLY A 1 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O SER A 2 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O SER A 3 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O GLY A 4 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O SER A 5 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O SER A 6 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O GLY A 7 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O SER A 65 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O GLY A 66 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O PRO A 67 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O SER A 68 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O SER A 69 UNP Q03014 CLONING ARTIFACT SEQADV 2E1O GLY A 70 UNP Q03014 CLONING ARTIFACT SEQRES 1 A 70 GLY SER SER GLY SER SER GLY LYS GLY GLY GLN VAL ARG SEQRES 2 A 70 PHE SER ASN ASP GLN THR ILE GLU LEU GLU LYS LYS PHE SEQRES 3 A 70 GLU THR GLN LYS TYR LEU SER PRO PRO GLU ARG LYS ARG SEQRES 4 A 70 LEU ALA LYS MET LEU GLN LEU SER GLU ARG GLN VAL LYS SEQRES 5 A 70 THR TRP PHE GLN ASN ARG ARG ALA LYS TRP ARG ARG SER SEQRES 6 A 70 GLY PRO SER SER GLY HELIX 1 1 SER A 15 GLN A 29 1 15 HELIX 2 2 SER A 33 LEU A 44 1 12 HELIX 3 3 SER A 47 GLY A 66 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 MODEL 2 MODEL 3 MODEL 4 MODEL 5 MODEL 6 MODEL 7 MODEL 8 MODEL 9 MODEL 10 MODEL 11 MODEL 12 MODEL 13 MODEL 14 MODEL 15 MODEL 16 MODEL 17 MODEL 18 MODEL 19 MODEL 20