HEADER PROTEIN BINDING 30-OCT-09 2WX0 TITLE TAB2 NZF DOMAIN IN COMPLEX WITH LYS63-LINKED DI-UBIQUITIN, TITLE 2 P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B, E, F; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE COMPND 6 7-INTERACTING PROTEIN 2; COMPND 7 CHAIN: C, G; COMPND 8 FRAGMENT: TAB2 NZF DOMAIN, RESIDUES 663-693; COMPND 9 SYNONYM: TAK1-BINDING PROTEIN 2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN BINDING, ISOPEPTIDE BOND, NZF DOMAIN, ZINC-FINGER, KEYWDS 2 METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.KULATHU,M.AKUTSU,A.BREMM,K.HOFMANN,D.KOMANDER REVDAT 4 11-MAY-11 2WX0 1 JRNL REMARK SEQRES REVDAT 3 02-FEB-10 2WX0 1 KEYWDS REMARK REVDAT 2 08-DEC-09 2WX0 1 JRNL ATOM REVDAT 1 24-NOV-09 2WX0 0 JRNL AUTH Y.KULATHU,M.AKUTSU,A.BREMM,K.HOFMANN,D.KOMANDER JRNL TITL TWO-SIDED UBIQUITIN BINDING EXPLAINS SPECIFICITY JRNL TITL 2 OF THE TAB2 NZF DOMAIN JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 1328 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19935683 JRNL DOI 10.1038/NSMB.1731 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.400 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.799 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.02 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.46 REMARK 3 NUMBER OF REFLECTIONS : 16855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1769 REMARK 3 R VALUE (WORKING SET) : 0.1736 REMARK 3 FREE R VALUE : 0.2359 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8039 - 4.3594 0.99 2859 175 0.1428 0.1872 REMARK 3 2 4.3594 - 3.4609 0.99 2822 151 0.1433 0.2008 REMARK 3 3 3.4609 - 3.0236 0.97 2788 126 0.1825 0.2405 REMARK 3 4 3.0236 - 2.7472 0.93 2645 137 0.2039 0.3160 REMARK 3 5 2.7472 - 2.5504 0.90 2529 136 0.2091 0.3068 REMARK 3 6 2.5504 - 2.4000 0.83 2355 132 0.2332 0.3188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.374 REMARK 3 B_SOL : 53.740 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.34 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.4250 REMARK 3 B22 (A**2) : -7.4187 REMARK 3 B33 (A**2) : -2.0063 REMARK 3 B12 (A**2) : -0.0000 REMARK 3 B13 (A**2) : -2.6818 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2832 REMARK 3 ANGLE : 1.099 3821 REMARK 3 CHIRALITY : 0.071 448 REMARK 3 PLANARITY : 0.004 494 REMARK 3 DIHEDRAL : 18.200 1092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 16.0963 12.8195 8.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.1280 T22: 0.1000 REMARK 3 T33: 0.0215 T12: 0.0511 REMARK 3 T13: -0.0229 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.1213 L22: 2.1313 REMARK 3 L33: 1.9330 L12: -0.3432 REMARK 3 L13: -0.1543 L23: 0.1744 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: 0.2542 S13: -0.0701 REMARK 3 S21: -0.5081 S22: -0.0398 S23: 0.0010 REMARK 3 S31: 0.1571 S32: -0.0723 S33: -0.0038 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 14.2603 -6.6852 30.7969 REMARK 3 T TENSOR REMARK 3 T11: 0.1725 T22: 0.1884 REMARK 3 T33: 0.2467 T12: -0.1364 REMARK 3 T13: -0.1116 T23: 0.1392 REMARK 3 L TENSOR REMARK 3 L11: 1.7063 L22: 2.9118 REMARK 3 L33: 3.3923 L12: -0.3849 REMARK 3 L13: 0.5596 L23: -3.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.2749 S12: -0.1069 S13: -0.1488 REMARK 3 S21: -0.7891 S22: 0.5437 S23: 0.7190 REMARK 3 S31: 0.8100 S32: -0.6666 S33: -0.5410 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 25.0581 8.1746 26.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.1036 REMARK 3 T33: 0.1569 T12: -0.0364 REMARK 3 T13: -0.0351 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 2.1153 L22: 0.4530 REMARK 3 L33: 1.0688 L12: -0.8129 REMARK 3 L13: -1.1671 L23: 0.2749 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: 0.3536 S13: -0.0099 REMARK 3 S21: -0.0138 S22: -0.2279 S23: -0.0974 REMARK 3 S31: -0.2057 S32: -0.0266 S33: 0.0627 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -12.7104 -2.0520 8.8730 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 0.2359 REMARK 3 T33: 0.1222 T12: 0.1616 REMARK 3 T13: 0.0478 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.8344 L22: 1.6597 REMARK 3 L33: 1.0576 L12: -1.4183 REMARK 3 L13: 0.4551 L23: -0.2404 REMARK 3 S TENSOR REMARK 3 S11: 0.4312 S12: 0.5803 S13: 0.3048 REMARK 3 S21: -0.7218 S22: -0.4586 S23: -0.1682 REMARK 3 S31: 0.1752 S32: 0.0660 S33: 0.0851 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -3.1623 17.0427 28.8386 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.1033 REMARK 3 T33: 0.2404 T12: -0.0384 REMARK 3 T13: -0.0155 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.1662 L22: 1.9802 REMARK 3 L33: 1.5077 L12: -0.1756 REMARK 3 L13: 0.3252 L23: 0.9593 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: -0.0938 S13: -0.0267 REMARK 3 S21: -0.0132 S22: 0.1888 S23: -0.2867 REMARK 3 S31: -0.0797 S32: 0.1403 S33: -0.1425 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WX0 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-09. REMARK 100 THE PDBE ID CODE IS EBI-41587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.40 REMARK 200 RESOLUTION RANGE LOW (A) : 24.90 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.1 REMARK 200 R MERGE FOR SHELL (I) : 0.58 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.7 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 73 REMARK 465 ARG A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 LEU E 73 REMARK 465 ARG E 74 REMARK 465 GLY E 75 REMARK 465 GLY E 76 REMARK 465 ARG F 74 REMARK 465 GLY F 75 REMARK 465 GLY F 76 REMARK 465 ASP G 663 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 73 CG CD1 CD2 REMARK 470 ASP C 663 CG OD1 OD2 REMARK 470 ARG E 72 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 73 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 16 OE2 GLU E 16 2555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 63 130.53 -37.61 REMARK 500 GLU B 64 1.89 85.81 REMARK 500 THR C 674 -10.34 79.19 REMARK 500 SER F 20 2.39 -68.05 REMARK 500 LYS F 63 120.46 -34.39 REMARK 500 THR G 674 -1.38 75.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1694 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 673 SG REMARK 620 2 CYS C 687 SG 123.6 REMARK 620 3 CYS C 670 SG 117.0 97.3 REMARK 620 4 CYS C 684 SG 105.4 110.3 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G1694 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 670 SG REMARK 620 2 CYS G 673 SG 112.9 REMARK 620 3 CYS G 684 SG 97.5 99.1 REMARK 620 4 CYS G 687 SG 97.7 132.1 112.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1694 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN G1694 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C7M RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN RABEX-5 RESIDUES 1-74 REMARK 900 IN COMPLEX WITH UBIQUITIN REMARK 900 RELATED ID: 1YD8 RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN GGA3 GAT DOMAIN AND UBIQUITIN REMARK 900 RELATED ID: 1E0Q RELATED DB: PDB REMARK 900 MUTANT PEPTIDE FROM THE FIRST N-TERMINAL REMARK 900 17 AMINO-ACID OF UBIQUITIN REMARK 900 RELATED ID: 2C7N RELATED DB: PDB REMARK 900 HUMAN RABEX-5 RESIDUES 1-74 IN COMPLEX REMARK 900 WITH UBIQUITIN REMARK 900 RELATED ID: 2FIF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BOVINE RABEX-5 REMARK 900 FRAGMENT COMPLEXEDWITH UBIQUITIN REMARK 900 RELATED ID: 2D3G RELATED DB: PDB REMARK 900 DOUBLE SIDED UBIQUITIN BINDING OF HRS-UIM REMARK 900 RELATED ID: 1V80 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURES OF UBIQUITIN AT 30 BAR REMARK 900 AND 3 KBAR REMARK 900 RELATED ID: 1P3Q RELATED DB: PDB REMARK 900 MECHANISM OF UBIQUITIN RECOGNITION BY THE REMARK 900 CUE DOMAIN OF VPS9 REMARK 900 RELATED ID: 1WR6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GGA3 GAT DOMAIN IN REMARK 900 COMPLEX WITHUBIQUITIN REMARK 900 RELATED ID: 2FID RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BOVINE RABEX-5 REMARK 900 FRAGMENT COMPLEXEDWITH UBIQUITIN REMARK 900 RELATED ID: 1V81 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURES OF UBIQUITIN AT 30 BAR REMARK 900 AND 3 KBAR REMARK 900 RELATED ID: 1AAR RELATED DB: PDB REMARK 900 DI-UBIQUITIN REMARK 900 RELATED ID: 1UZX RELATED DB: PDB REMARK 900 A COMPLEX OF THE VPS23 UEV WITH UBIQUITIN REMARK 900 RELATED ID: 1WRD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOM1 GAT DOMAIN IN REMARK 900 COMPLEX WITHUBIQUITIN REMARK 900 RELATED ID: 2WX1 RELATED DB: PDB REMARK 900 TAB2 NZF DOMAIN IN COMPLEX WITH LYS63- REMARK 900 LINKED TRI-UBIQUITIN, P212121 REMARK 900 RELATED ID: 2WWZ RELATED DB: PDB REMARK 900 TAB2 NZF DOMAIN IN COMPLEX WITH LYS63- REMARK 900 LINKED DI-UBIQUITIN, P212121 DBREF 2WX0 A 1 76 UNP P62990 UBIQ_BOVIN 1 76 DBREF 2WX0 B 1 76 UNP P62990 UBIQ_BOVIN 1 76 DBREF 2WX0 C 663 693 UNP Q9NYJ8 TAB2_HUMAN 663 693 DBREF 2WX0 E 1 76 UNP P62990 UBIQ_BOVIN 1 76 DBREF 2WX0 F 1 76 UNP P62990 UBIQ_BOVIN 1 76 DBREF 2WX0 G 663 693 UNP Q9NYJ8 TAB2_HUMAN 663 693 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 31 ASP GLU GLY ALA GLN TRP ASN CYS THR ALA CYS THR PHE SEQRES 2 C 31 LEU ASN HIS PRO ALA LEU ILE ARG CYS GLU GLN CYS GLU SEQRES 3 C 31 MET PRO ARG HIS PHE SEQRES 1 E 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 E 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 F 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 F 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 G 31 ASP GLU GLY ALA GLN TRP ASN CYS THR ALA CYS THR PHE SEQRES 2 G 31 LEU ASN HIS PRO ALA LEU ILE ARG CYS GLU GLN CYS GLU SEQRES 3 G 31 MET PRO ARG HIS PHE HET ZN C1694 1 HET ZN G1694 1 HETNAM ZN ZINC ION FORMUL 7 ZN 2(ZN 2+) FORMUL 8 HOH *103(H2 O) HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 THR B 22 GLY B 35 1 14 HELIX 4 4 PRO B 37 ASP B 39 5 3 HELIX 5 5 LEU B 56 ASN B 60 5 5 HELIX 6 6 THR E 22 GLY E 35 1 14 HELIX 7 7 PRO E 37 ASP E 39 5 3 HELIX 8 8 THR F 22 GLY F 35 1 14 HELIX 9 9 PRO F 37 ASP F 39 5 3 HELIX 10 10 LEU F 56 ASN F 60 5 5 SHEET 1 AA 5 THR A 12 GLU A 16 0 SHEET 2 AA 5 GLN A 2 THR A 7 -1 O ILE A 3 N LEU A 15 SHEET 3 AA 5 THR A 66 LEU A 71 1 O LEU A 67 N LYS A 6 SHEET 4 AA 5 GLN A 41 PHE A 45 -1 O ARG A 42 N VAL A 70 SHEET 5 AA 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 BA 5 THR B 12 GLU B 16 0 SHEET 2 BA 5 GLN B 2 THR B 7 -1 O ILE B 3 N LEU B 15 SHEET 3 BA 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 BA 5 GLN B 41 PHE B 45 -1 O ARG B 42 N VAL B 70 SHEET 5 BA 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 CA 2 TRP C 668 ASN C 669 0 SHEET 2 CA 2 LEU C 676 ASN C 677 -1 O ASN C 677 N TRP C 668 SHEET 1 EA 5 THR E 12 GLU E 16 0 SHEET 2 EA 5 GLN E 2 THR E 7 -1 O ILE E 3 N LEU E 15 SHEET 3 EA 5 THR E 66 LEU E 71 1 O LEU E 67 N LYS E 6 SHEET 4 EA 5 GLN E 41 PHE E 45 -1 O ARG E 42 N VAL E 70 SHEET 5 EA 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 SHEET 1 FA 5 THR F 12 GLU F 16 0 SHEET 2 FA 5 GLN F 2 LYS F 6 -1 O ILE F 3 N LEU F 15 SHEET 3 FA 5 THR F 66 LEU F 71 1 O LEU F 67 N LYS F 6 SHEET 4 FA 5 GLN F 41 PHE F 45 -1 O ARG F 42 N VAL F 70 SHEET 5 FA 5 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 SHEET 1 GA 2 TRP G 668 ASN G 669 0 SHEET 2 GA 2 LEU G 676 ASN G 677 -1 O ASN G 677 N TRP G 668 LINK ZN ZN C1694 SG CYS C 673 1555 1555 2.31 LINK ZN ZN C1694 SG CYS C 687 1555 1555 2.37 LINK ZN ZN C1694 SG CYS C 670 1555 1555 2.38 LINK ZN ZN C1694 SG CYS C 684 1555 1555 2.41 LINK ZN ZN G1694 SG CYS G 673 1555 1555 2.17 LINK ZN ZN G1694 SG CYS G 684 1555 1555 2.42 LINK ZN ZN G1694 SG CYS G 687 1555 1555 2.32 LINK ZN ZN G1694 SG CYS G 670 1555 1555 2.40 SITE 1 AC1 4 CYS C 670 CYS C 673 CYS C 684 CYS C 687 SITE 1 AC2 4 CYS G 670 CYS G 673 CYS G 684 CYS G 687 CRYST1 55.390 73.620 59.250 90.00 105.91 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018054 0.000000 0.005146 0.00000 SCALE2 0.000000 0.013583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017550 0.00000