HEADER HYDROLASE 12-NOV-11 3UMB TITLE CRYSTAL STRUCTURE OF THE L-2-HALOACID DEHALOGENASE RSC1362 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHALOGENASE-LIKE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-2-HALOACID DEHALOGENASE RSC1362; COMPND 5 EC: 3.8.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ORGANISM_TAXID: 305; SOURCE 4 GENE: RSC1362; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV-L KEYWDS HALOACID DEHALOGENASE-LIKE HYDROLASE PROTEIN SUPERFAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PETIT,P.W.Y.CHAN,A.SAVCHENKO,A.F.YAKUNIN,E.A.EDWARDS,E.F.PAI REVDAT 3 06-DEC-23 3UMB 1 REMARK REVDAT 2 13-SEP-23 3UMB 1 REMARK LINK REVDAT 1 14-NOV-12 3UMB 0 JRNL AUTH P.W.Y.CHAN,T.K.W.TO,P.PETIT,C.TRAN,M.WAELTI,A.SAVCHENKO, JRNL AUTH 2 A.F.YAKUNIN,E.A.EDWARDS,E.F.PAI JRNL TITL STRUCTURAL ADAPTATIONS OF L-2-HALOACID DEHALOGENASES THAT JRNL TITL 2 ENABLE HYDROLYTIC DEFLUORINATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 585 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 840 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : -1.53000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1799 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1203 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2454 ; 1.609 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2904 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;34.694 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 264 ;16.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 269 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2038 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 396 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 456 ; 0.166 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1804 ; 1.573 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 668 ; 2.282 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 650 ; 3.377 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3UMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12258 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 64.785 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21400 REMARK 200 R SYM FOR SHELL (I) : 0.21400 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QH9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% ISOPROPANOL, 0.1 M POTASSIUM REMARK 280 CHLORIDE, 25 MM MAGNESIUM CHLORIDE, 2% 1,4-DIOXANE, 50 MM SODIUM REMARK 280 CACODYLATE, PH 6.0, CRYOPROTECTANT: PARATONE N, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.19000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.78500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.30000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 234 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 236 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 240 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 241 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 248 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 255 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 229 REMARK 465 GLN A 230 REMARK 465 SER A 231 REMARK 465 MSE A 232 REMARK 465 ARG A 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 -80.50 -87.29 REMARK 500 THR A 14 -66.27 -107.85 REMARK 500 PRO A 102 -34.57 -39.68 REMARK 500 ALA A 136 -10.88 139.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 240 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD1 REMARK 620 2 ASP A 46 OD1 96.7 REMARK 620 3 HOH A 301 O 68.1 127.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 241 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 77 O REMARK 620 2 ASN A 80 OD1 91.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 239 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 273 O REMARK 620 2 HOH A 285 O 107.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 241 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UM9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DEFLUORINATING L-2-HALOACID DEHALOGENASE REMARK 900 BPRO0530 REMARK 900 RELATED ID: 3UMC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE L-2-HALOACID DEHALOGENASE PA0810 REMARK 900 RELATED ID: 3UMG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DEFLUORINATING L-2-HALOACID DEHALOGENASE REMARK 900 RHA0230 DBREF 3UMB A 1 233 UNP Q8XZN3 Q8XZN3_RALSO 1 233 SEQRES 1 A 233 MSE THR SER ILE ARG ALA VAL VAL PHE ASP ALA TYR GLY SEQRES 2 A 233 THR LEU PHE ASP VAL TYR SER VAL ALA ALA ARG ALA GLU SEQRES 3 A 233 GLN LEU PHE PRO GLY LYS GLY GLU ALA LEU SER VAL LEU SEQRES 4 A 233 TRP ARG ASP ARG GLN ILE ASP TYR THR ARG ILE ARG SER SEQRES 5 A 233 LEU ALA GLY PRO SER GLY GLU HIS TYR LYS PRO PHE TRP SEQRES 6 A 233 ASP VAL THR VAL ASP ALA LEU ARG TYR ALA CYS ALA ARG SEQRES 7 A 233 LEU ASN LEU PRO LEU GLY ASN HIS ALA GLU ALA THR LEU SEQRES 8 A 233 MSE ARG GLU TYR ALA CYS LEU SER ALA PHE PRO GLU ASN SEQRES 9 A 233 VAL PRO VAL LEU ARG GLN LEU ARG GLU MSE GLY LEU PRO SEQRES 10 A 233 LEU GLY ILE LEU SER ASN GLY ASN PRO GLN MSE LEU GLU SEQRES 11 A 233 ILE ALA VAL LYS SER ALA GLY MSE SER GLY LEU PHE ASP SEQRES 12 A 233 HIS VAL LEU SER VAL ASP ALA VAL ARG LEU TYR LYS THR SEQRES 13 A 233 ALA PRO ALA ALA TYR ALA LEU ALA PRO ARG ALA PHE GLY SEQRES 14 A 233 VAL PRO ALA ALA GLN ILE LEU PHE VAL SER SER ASN GLY SEQRES 15 A 233 TRP ASP ALA CYS GLY ALA THR TRP HIS GLY PHE THR THR SEQRES 16 A 233 PHE TRP ILE ASN ARG LEU GLY HIS PRO PRO GLU ALA LEU SEQRES 17 A 233 ASP VAL ALA PRO ALA ALA ALA GLY HIS ASP MSE ARG ASP SEQRES 18 A 233 LEU LEU GLN PHE VAL GLN ALA ARG GLN SER MSE ARG MODRES 3UMB MSE A 92 MET SELENOMETHIONINE MODRES 3UMB MSE A 114 MET SELENOMETHIONINE MODRES 3UMB MSE A 128 MET SELENOMETHIONINE MODRES 3UMB MSE A 138 MET SELENOMETHIONINE MODRES 3UMB MSE A 219 MET SELENOMETHIONINE HET MSE A 92 8 HET MSE A 114 8 HET MSE A 128 8 HET MSE A 138 8 HET MSE A 219 8 HET K A 234 1 HET K A 235 1 HET CL A 236 1 HET CL A 237 1 HET CL A 238 1 HET NA A 239 1 HET MG A 240 1 HET MG A 241 1 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 K 2(K 1+) FORMUL 4 CL 3(CL 1-) FORMUL 7 NA NA 1+ FORMUL 8 MG 2(MG 2+) FORMUL 10 HOH *69(H2 O) HELIX 1 1 VAL A 18 PHE A 29 1 12 HELIX 2 2 LYS A 32 GLY A 55 1 24 HELIX 3 3 PRO A 63 LEU A 79 1 17 HELIX 4 4 GLY A 84 CYS A 97 1 14 HELIX 5 5 GLU A 103 GLU A 113 1 11 HELIX 6 6 ASN A 125 SER A 135 1 11 HELIX 7 7 ALA A 157 ALA A 162 1 6 HELIX 8 8 ALA A 162 GLY A 169 1 8 HELIX 9 9 PRO A 171 ALA A 173 5 3 HELIX 10 10 ASN A 181 GLY A 192 1 12 HELIX 11 11 ASP A 218 ALA A 228 1 11 SHEET 1 A 6 HIS A 144 SER A 147 0 SHEET 2 A 6 LEU A 118 SER A 122 1 N ILE A 120 O LEU A 146 SHEET 3 A 6 ALA A 6 PHE A 9 1 N PHE A 9 O GLY A 119 SHEET 4 A 6 ILE A 175 SER A 179 1 O LEU A 176 N ALA A 6 SHEET 5 A 6 THR A 194 ILE A 198 1 O THR A 194 N PHE A 177 SHEET 6 A 6 ALA A 214 GLY A 216 1 O GLY A 216 N TRP A 197 SHEET 1 B 2 PHE A 16 ASP A 17 0 SHEET 2 B 2 SER A 99 ALA A 100 -1 O SER A 99 N ASP A 17 LINK C LEU A 91 N MSE A 92 1555 1555 1.32 LINK C MSE A 92 N ARG A 93 1555 1555 1.34 LINK C GLU A 113 N MSE A 114 1555 1555 1.34 LINK C MSE A 114 N GLY A 115 1555 1555 1.34 LINK C GLN A 127 N MSE A 128 1555 1555 1.34 LINK C MSE A 128 N LEU A 129 1555 1555 1.32 LINK C GLY A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N SER A 139 1555 1555 1.34 LINK C ASP A 218 N MSE A 219 1555 1555 1.32 LINK C MSE A 219 N ARG A 220 1555 1555 1.32 LINK OD1 ASP A 42 MG MG A 240 1555 1555 2.30 LINK OD1 ASP A 46 MG MG A 240 1555 1555 2.96 LINK OG SER A 57 K K A 235 1555 1555 2.85 LINK O ALA A 77 MG MG A 241 1555 1555 2.36 LINK OD1 ASN A 80 MG MG A 241 1555 1555 2.48 LINK NA NA A 239 O HOH A 273 1555 1555 3.09 LINK NA NA A 239 O HOH A 285 1555 1555 2.93 LINK MG MG A 240 O HOH A 301 1555 1555 2.37 CISPEP 1 LYS A 155 THR A 156 0 10.70 SITE 1 AC1 4 SER A 57 PRO A 158 ALA A 159 HOH A 275 SITE 1 AC2 2 PRO A 56 HOH A 258 SITE 1 AC3 3 ASP A 46 ARG A 49 TRP A 183 SITE 1 AC4 4 PRO A 165 HIS A 191 HOH A 273 HOH A 285 SITE 1 AC5 4 ASP A 42 ASP A 46 HOH A 286 HOH A 301 SITE 1 AC6 2 ALA A 77 ASN A 80 CRYST1 66.380 129.570 54.300 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018416 0.00000