HEADER HYDROLASE/DE NOVO PROTEIN 14-AUG-12 4GLA TITLE OBODY NL8 BOUND TO HEN EGG-WHITE LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 19-147; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 6 EC: 3.2.1.17; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: OBODY NL8; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: EGG WHITE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 8 ORGANISM_TAXID: 13773; SOURCE 9 GENE: ASPS; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: DH5[ALPHA]; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS BETA BARREL, OB-FOLD, PROTEIN-PROTEIN COMPLEX, NOVEL SCAFFOLD, KEYWDS 2 MURAMINIDASE, ENZYME INHIBITION, ENGINEERED BINDING PROTEIN, KEYWDS 3 HYDROLASE-DE NOVO PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.STEEMSON REVDAT 2 12-FEB-14 4GLA 1 JRNL REVDAT 1 14-AUG-13 4GLA 0 JRNL AUTH J.D.STEEMSON,M.BAAKE,J.RAKONJAC,V.L.ARCUS,M.T.LIDDAMENT JRNL TITL TRACKING MOLECULAR RECOGNITION AT THE ATOMIC LEVEL WITH A JRNL TITL 2 NEW PROTEIN SCAFFOLD BASED ON THE OB-FOLD. JRNL REF PLOS ONE V. 9 86050 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24465865 JRNL DOI 10.1371/JOURNAL.PONE.0086050 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 13456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.116 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3399 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4600 ; 1.452 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 6.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;36.343 ;23.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;20.576 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2578 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1494 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2283 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.264 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2185 ; 0.510 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3412 ; 0.879 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1419 ; 1.438 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1188 ; 2.373 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 129 3 REMARK 3 1 A 1 A 129 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 516 ; 0.060 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 B (A): 485 ; 0.580 ; 5.000 REMARK 3 TIGHT THERMAL 1 B (A**2): 516 ; 0.110 ; 0.500 REMARK 3 LOOSE THERMAL 1 B (A**2): 485 ; 1.390 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : D C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 20 D 45 2 REMARK 3 1 C 20 C 45 2 REMARK 3 2 D 54 D 88 2 REMARK 3 2 C 54 C 88 2 REMARK 3 3 D 97 D 111 2 REMARK 3 3 C 97 C 111 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 D (A): 284 ; 0.050 ; 0.050 REMARK 3 MEDIUM POSITIONAL 2 D (A): 271 ; 0.440 ; 0.500 REMARK 3 TIGHT THERMAL 2 D (A**2): 284 ; 0.130 ; 0.500 REMARK 3 MEDIUM THERMAL 2 D (A**2): 271 ; 0.730 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4387 -18.8315 33.7942 REMARK 3 T TENSOR REMARK 3 T11: -0.1085 T22: -0.0608 REMARK 3 T33: -0.1488 T12: 0.0977 REMARK 3 T13: 0.0413 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 6.3577 L22: 2.8069 REMARK 3 L33: 3.3455 L12: -1.0351 REMARK 3 L13: 0.3985 L23: -1.3234 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: -0.0696 S13: -0.2645 REMARK 3 S21: 0.2871 S22: 0.0321 S23: 0.2993 REMARK 3 S31: -0.0088 S32: 0.0496 S33: -0.1312 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3770 -13.1512 5.5895 REMARK 3 T TENSOR REMARK 3 T11: -0.0592 T22: 0.2450 REMARK 3 T33: 0.2012 T12: -0.0492 REMARK 3 T13: 0.1520 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 6.5796 L22: 3.6591 REMARK 3 L33: 7.4093 L12: -1.7466 REMARK 3 L13: 1.8752 L23: -0.6230 REMARK 3 S TENSOR REMARK 3 S11: -0.3895 S12: -0.4852 S13: -0.5751 REMARK 3 S21: 0.1231 S22: 0.2238 S23: -0.5051 REMARK 3 S31: -0.1281 S32: 1.3144 S33: 0.1657 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 22 C 104 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8605 -2.3282 1.1773 REMARK 3 T TENSOR REMARK 3 T11: -0.0304 T22: -0.1012 REMARK 3 T33: -0.1554 T12: -0.1007 REMARK 3 T13: 0.0905 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 7.9393 L22: 6.7290 REMARK 3 L33: 1.8162 L12: -1.5249 REMARK 3 L13: -1.0459 L23: -0.3034 REMARK 3 S TENSOR REMARK 3 S11: -0.2939 S12: -0.0374 S13: -0.4228 REMARK 3 S21: 0.1364 S22: 0.2334 S23: 0.2985 REMARK 3 S31: -0.0760 S32: -0.0884 S33: 0.0605 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 22 D 107 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1730 -8.0431 12.8408 REMARK 3 T TENSOR REMARK 3 T11: -0.1618 T22: -0.0607 REMARK 3 T33: -0.1031 T12: 0.0020 REMARK 3 T13: 0.0242 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 6.6426 L22: 3.0558 REMARK 3 L33: 8.5727 L12: 0.5586 REMARK 3 L13: 0.3293 L23: -2.9053 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.0763 S13: 0.0021 REMARK 3 S21: -0.2058 S22: 0.1204 S23: 0.1009 REMARK 3 S31: -0.0960 S32: -0.0500 S33: -0.1677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB074325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95666 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : FLAT COLLIMATING RH COATED REMARK 200 MIRROR, TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M HEPES, 7% MPEG5000, PH 7.3, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.17200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.37950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.37950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.58600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.37950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.37950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 124.75800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.37950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.37950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.58600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.37950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.37950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.75800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.17200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 VAL C 1 REMARK 465 TYR C 2 REMARK 465 PRO C 3 REMARK 465 LYS C 4 REMARK 465 LYS C 5 REMARK 465 THR C 6 REMARK 465 HIS C 7 REMARK 465 TRP C 8 REMARK 465 THR C 9 REMARK 465 ALA C 10 REMARK 465 GLU C 11 REMARK 465 ILE C 12 REMARK 465 THR C 13 REMARK 465 PRO C 14 REMARK 465 ASN C 15 REMARK 465 GLU C 44A REMARK 465 LYS C 105 REMARK 465 ALA C 106 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 VAL D 1 REMARK 465 TYR D 2 REMARK 465 PRO D 3 REMARK 465 LYS D 4 REMARK 465 LYS D 5 REMARK 465 THR D 6 REMARK 465 HIS D 7 REMARK 465 TRP D 8 REMARK 465 THR D 9 REMARK 465 ALA D 10 REMARK 465 GLU D 11 REMARK 465 ILE D 12 REMARK 465 THR D 13 REMARK 465 PRO D 14 REMARK 465 ASN D 15 REMARK 465 LEU D 16 REMARK 465 HIS D 17 REMARK 465 GLY D 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 16 CG CD1 CD2 REMARK 470 HIS C 17 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 106 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 20 O HOH C 203 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 38 -5.81 83.49 REMARK 500 ARG A 68 43.42 -104.39 REMARK 500 ARG A 128 32.06 -84.18 REMARK 500 SER B 36 10.46 -141.65 REMARK 500 ARG B 68 49.00 -109.00 REMARK 500 ARG B 128 37.04 -86.39 REMARK 500 HIS C 17 150.59 160.17 REMARK 500 SER C 84 121.01 -38.01 REMARK 500 LYS C 85 41.26 -79.34 REMARK 500 GLU D 45 39.79 -91.12 REMARK 500 LYS D 104 128.94 -39.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU C 16 HIS C 17 -112.79 REMARK 500 GLY C 18 THR C 19 -55.10 REMARK 500 GLY D 89 ARG D 90 -138.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 14 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 201 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH D 202 DISTANCE = 6.29 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GLV RELATED DB: PDB REMARK 900 RELATED ID: 4GN3 RELATED DB: PDB REMARK 900 RELATED ID: 4GN4 RELATED DB: PDB REMARK 900 RELATED ID: 4GN5 RELATED DB: PDB DBREF 4GLA A 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 4GLA B 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 4GLA C -1 106 PDB 4GLA 4GLA -1 106 DBREF 4GLA D -1 107 PDB 4GLA 4GLA -1 107 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 B 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 B 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 B 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 B 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 B 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 B 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 B 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 B 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 B 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 C 109 GLY SER VAL TYR PRO LYS LYS THR HIS TRP THR ALA GLU SEQRES 2 C 109 ILE THR PRO ASN LEU HIS GLY THR GLU VAL VAL VAL ALA SEQRES 3 C 109 GLY TRP VAL ALA SER LEU GLY ASP TYR GLY ARG VAL LYS SEQRES 4 C 109 ILE VAL LYS VAL SER ASP ARG GLU GLY GLY ALA ALA VAL SEQRES 5 C 109 PRO VAL TYR LEU GLU ALA GLY LYS THR PRO ASP HIS LEU SEQRES 6 C 109 PHE LYS VAL PHE ALA GLU LEU SER ARG GLU ASP VAL VAL SEQRES 7 C 109 VAL ILE LYS GLY ILE VAL GLU ALA SER LYS GLY VAL GLY SEQRES 8 C 109 ARG GLY VAL GLU ILE PHE PRO SER GLU ILE TRP ILE LEU SEQRES 9 C 109 ASN LYS ALA LYS ALA SEQRES 1 D 109 GLY SER VAL TYR PRO LYS LYS THR HIS TRP THR ALA GLU SEQRES 2 D 109 ILE THR PRO ASN LEU HIS GLY THR GLU VAL VAL VAL ALA SEQRES 3 D 109 GLY TRP VAL ALA SER LEU GLY ASP TYR GLY ARG VAL LYS SEQRES 4 D 109 ILE VAL LYS VAL SER ASP ARG GLU GLY GLY ALA ALA VAL SEQRES 5 D 109 PRO VAL TYR LEU GLU ALA GLY LYS THR PRO ASP HIS LEU SEQRES 6 D 109 PHE LYS VAL PHE ALA GLU LEU SER ARG GLU ASP VAL VAL SEQRES 7 D 109 VAL ILE LYS GLY ILE VAL GLU ALA SER LYS GLY VAL GLY SEQRES 8 D 109 ARG GLY VAL GLU ILE PHE PRO SER GLU ILE TRP ILE LEU SEQRES 9 D 109 ASN LYS ALA LYS ALA FORMUL 5 HOH *45(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 SER A 100 1 13 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 ASP A 119 ILE A 124 5 6 HELIX 9 9 GLY B 4 HIS B 15 1 12 HELIX 10 10 ASN B 19 TYR B 23 5 5 HELIX 11 11 SER B 24 ASN B 37 1 14 HELIX 12 12 PRO B 79 SER B 85 5 7 HELIX 13 13 ILE B 88 SER B 100 1 13 HELIX 14 14 ASN B 103 ALA B 107 5 5 HELIX 15 15 TRP B 108 CYS B 115 1 8 HELIX 16 16 ASP B 119 ILE B 124 5 6 HELIX 17 17 ASP C 60 ALA C 67 1 8 HELIX 18 18 PRO D 60 ALA D 68 1 9 SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SHEET 1 B 3 THR B 43 ARG B 45 0 SHEET 2 B 3 THR B 51 TYR B 53 -1 O ASP B 52 N ASN B 44 SHEET 3 B 3 ILE B 58 ASN B 59 -1 O ILE B 58 N TYR B 53 SHEET 1 C 6 GLU C 20 ASP C 32 0 SHEET 2 C 6 VAL C 36 SER C 42 -1 O LYS C 40 N ALA C 28 SHEET 3 C 6 VAL C 49 GLU C 54 -1 O LEU C 53 N LYS C 37 SHEET 4 C 6 VAL C 91 ILE C 100 1 O ILE C 93 N TYR C 52 SHEET 5 C 6 VAL C 74 ALA C 83 -1 N GLU C 82 O GLU C 92 SHEET 6 C 6 GLU C 20 ASP C 32 -1 N GLY C 25 O VAL C 75 SHEET 1 D 6 GLU D 20 ASP D 32 0 SHEET 2 D 6 VAL D 36 SER D 42 -1 O LYS D 40 N ALA D 28 SHEET 3 D 6 ALA D 49 GLU D 55 -1 O LEU D 54 N LYS D 37 SHEET 4 D 6 VAL D 92 ILE D 101 1 O ILE D 94 N TYR D 53 SHEET 5 D 6 VAL D 75 ALA D 84 -1 N GLU D 83 O GLU D 93 SHEET 6 D 6 GLU D 20 ASP D 32 -1 N GLY D 25 O VAL D 76 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.06 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.52 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.26 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.07 SSBOND 5 CYS B 6 CYS B 127 1555 1555 2.79 SSBOND 6 CYS B 30 CYS B 115 1555 1555 2.56 SSBOND 7 CYS B 64 CYS B 80 1555 1555 2.41 CISPEP 1 HIS C 17 GLY C 18 0 -12.66 CRYST1 76.759 76.759 166.344 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006012 0.00000