HEADER HYDROLASE 21-OCT-13 4N9Z TITLE CRYSTAL STRUCTURE OF MOUSE POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) TITLE 2 CATALYTIC DOMAIN MUTANT E749Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 3.2.1.143; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLY(ADP-RIBOSE) GLYCOHYDROLASE, PARG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,Z.CHENG,W.XU REVDAT 3 20-SEP-23 4N9Z 1 REMARK SEQADV REVDAT 2 24-SEP-14 4N9Z 1 JRNL REVDAT 1 29-JAN-14 4N9Z 0 JRNL AUTH Z.WANG,J.P.GAGNE,G.G.POIRIER,W.XU JRNL TITL CRYSTALLOGRAPHIC AND BIOCHEMICAL ANALYSIS OF THE MOUSE JRNL TITL 2 POLY(ADP-RIBOSE) GLYCOHYDROLASE. JRNL REF PLOS ONE V. 9 86010 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24465839 JRNL DOI 10.1371/JOURNAL.PONE.0086010 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 95110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4773 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6206 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 333 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8251 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.647 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8575 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8063 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11626 ; 1.345 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18562 ; 0.792 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1013 ; 6.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 406 ;35.835 ;23.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1475 ;12.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 72 ;15.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1256 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9493 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2033 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4064 ; 1.397 ; 2.325 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4063 ; 1.396 ; 2.323 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5073 ; 2.081 ; 3.895 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 442 A 957 REMARK 3 RESIDUE RANGE : A 1001 A 1006 REMARK 3 RESIDUE RANGE : A 1101 A 1538 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8871 -95.2785 129.5114 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: 0.0191 REMARK 3 T33: 0.0445 T12: 0.0090 REMARK 3 T13: -0.0230 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.0649 L22: 0.4500 REMARK 3 L33: 1.4379 L12: -0.1749 REMARK 3 L13: -0.8686 L23: 0.1167 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0246 S13: -0.0887 REMARK 3 S21: -0.0603 S22: -0.0159 S23: -0.0111 REMARK 3 S31: 0.0832 S32: 0.0843 S33: 0.0157 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 442 B 957 REMARK 3 RESIDUE RANGE : B 1001 B 1006 REMARK 3 RESIDUE RANGE : B 1101 B 1629 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2713 -53.5739 129.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0353 REMARK 3 T33: 0.0316 T12: 0.0207 REMARK 3 T13: 0.0023 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.9113 L22: 0.4033 REMARK 3 L33: 1.2249 L12: -0.1464 REMARK 3 L13: 0.5310 L23: -0.0367 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: -0.0025 S13: 0.0864 REMARK 3 S21: -0.0576 S22: -0.0246 S23: 0.0001 REMARK 3 S31: -0.1116 S32: -0.0937 S33: -0.0102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4N9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4FC2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)2SO4, 16% PEG3,350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.0K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.64150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 438 REMARK 465 ASN A 439 REMARK 465 LEU A 440 REMARK 465 PRO A 441 REMARK 465 GLU A 517 REMARK 465 ASP A 518 REMARK 465 GLU A 519 REMARK 465 ASN A 520 REMARK 465 GLY A 521 REMARK 465 GLU A 522 REMARK 465 ARG A 523 REMARK 465 GLU A 958 REMARK 465 THR A 959 REMARK 465 GLY B 438 REMARK 465 ASN B 439 REMARK 465 LEU B 440 REMARK 465 PRO B 441 REMARK 465 VAL B 516 REMARK 465 GLU B 517 REMARK 465 ASP B 518 REMARK 465 GLU B 519 REMARK 465 ASN B 520 REMARK 465 GLY B 521 REMARK 465 GLU B 522 REMARK 465 ARG B 523 REMARK 465 GLU B 958 REMARK 465 THR B 959 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1106 O HOH B 1575 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 611 -13.73 83.10 REMARK 500 SER A 644 -64.82 -105.23 REMARK 500 THR A 709 -164.95 -105.27 REMARK 500 LEU A 745 44.96 -145.67 REMARK 500 ASN A 755 74.18 -116.18 REMARK 500 ALA A 789 -115.25 46.78 REMARK 500 CYS A 865 -159.29 -93.04 REMARK 500 LEU B 537 39.28 -83.84 REMARK 500 ASN B 554 40.63 -144.95 REMARK 500 LYS B 611 -17.32 80.04 REMARK 500 MET B 642 31.96 -96.16 REMARK 500 LEU B 745 49.04 -154.02 REMARK 500 VAL B 746 -168.88 -105.13 REMARK 500 ALA B 789 -120.45 50.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE V3L A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE V3L B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FC2 RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 4N9Y RELATED DB: PDB REMARK 900 E748Q REMARK 900 RELATED ID: 4NA0 RELATED DB: PDB REMARK 900 RELATED ID: 4NA4 RELATED DB: PDB REMARK 900 RELATED ID: 4NA5 RELATED DB: PDB REMARK 900 RELATED ID: 4NA6 RELATED DB: PDB DBREF 4N9Z A 439 959 UNP O88622 PARG_MOUSE 439 959 DBREF 4N9Z B 439 959 UNP O88622 PARG_MOUSE 439 959 SEQADV 4N9Z GLY A 438 UNP O88622 EXPRESSION TAG SEQADV 4N9Z GLN A 749 UNP O88622 GLU 749 ENGINEERED MUTATION SEQADV 4N9Z GLY B 438 UNP O88622 EXPRESSION TAG SEQADV 4N9Z GLN B 749 UNP O88622 GLU 749 ENGINEERED MUTATION SEQRES 1 A 522 GLY ASN LEU PRO PRO GLU LYS LYS TRP LEU GLY THR PRO SEQRES 2 A 522 ILE GLU GLU MET ARG LYS MET PRO ARG CYS GLY ILE HIS SEQRES 3 A 522 LEU PRO SER LEU ARG PRO SER ALA SER HIS THR VAL THR SEQRES 4 A 522 VAL ARG VAL ASP LEU LEU ARG ALA GLY GLU VAL PRO LYS SEQRES 5 A 522 PRO PHE PRO THR HIS TYR LYS ASP LEU TRP ASP ASN LYS SEQRES 6 A 522 HIS VAL LYS MET PRO CYS SER GLU GLN ASN LEU TYR PRO SEQRES 7 A 522 VAL GLU ASP GLU ASN GLY GLU ARG THR ALA GLY SER ARG SEQRES 8 A 522 TRP GLU LEU ILE GLN THR ALA LEU LEU ASN LYS PHE THR SEQRES 9 A 522 ARG PRO GLN ASN LEU LYS ASP ALA ILE LEU LYS TYR ASN SEQRES 10 A 522 VAL ALA TYR SER LYS LYS TRP ASP PHE THR ALA LEU VAL SEQRES 11 A 522 ASP PHE TRP ASP LYS VAL LEU GLU GLU ALA GLU ALA GLN SEQRES 12 A 522 HIS LEU TYR GLN SER ILE LEU PRO ASP MET VAL LYS ILE SEQRES 13 A 522 ALA LEU CYS LEU PRO ASN ILE CYS THR GLN PRO ILE PRO SEQRES 14 A 522 LEU LEU LYS GLN LYS MET ASN HIS SER VAL THR MET SER SEQRES 15 A 522 GLN GLU GLN ILE ALA SER LEU LEU ALA ASN ALA PHE PHE SEQRES 16 A 522 CYS THR PHE PRO ARG ARG ASN ALA LYS MET LYS SER GLU SEQRES 17 A 522 TYR SER SER TYR PRO ASP ILE ASN PHE ASN ARG LEU PHE SEQRES 18 A 522 GLU GLY ARG SER SER ARG LYS PRO GLU LYS LEU LYS THR SEQRES 19 A 522 LEU PHE CYS TYR PHE ARG ARG VAL THR GLU LYS LYS PRO SEQRES 20 A 522 THR GLY LEU VAL THR PHE THR ARG GLN SER LEU GLU ASP SEQRES 21 A 522 PHE PRO GLU TRP GLU ARG CYS GLU LYS PRO LEU THR ARG SEQRES 22 A 522 LEU HIS VAL THR TYR GLU GLY THR ILE GLU GLY ASN GLY SEQRES 23 A 522 ARG GLY MET LEU GLN VAL ASP PHE ALA ASN ARG PHE VAL SEQRES 24 A 522 GLY GLY GLY VAL THR GLY ALA GLY LEU VAL GLN GLU GLN SEQRES 25 A 522 ILE ARG PHE LEU ILE ASN PRO GLU LEU ILE VAL SER ARG SEQRES 26 A 522 LEU PHE THR GLU VAL LEU ASP HIS ASN GLU CYS LEU ILE SEQRES 27 A 522 ILE THR GLY THR GLU GLN TYR SER GLU TYR THR GLY TYR SEQRES 28 A 522 ALA GLU THR TYR ARG TRP ALA ARG SER HIS GLU ASP GLY SEQRES 29 A 522 SER GLU LYS ASP ASP TRP GLN ARG ARG CYS THR GLU ILE SEQRES 30 A 522 VAL ALA ILE ASP ALA LEU HIS PHE ARG ARG TYR LEU ASP SEQRES 31 A 522 GLN PHE VAL PRO GLU LYS VAL ARG ARG GLU LEU ASN LYS SEQRES 32 A 522 ALA TYR CYS GLY PHE LEU ARG PRO GLY VAL PRO SER GLU SEQRES 33 A 522 ASN LEU SER ALA VAL ALA THR GLY ASN TRP GLY CYS GLY SEQRES 34 A 522 ALA PHE GLY GLY ASP ALA ARG LEU LYS ALA LEU ILE GLN SEQRES 35 A 522 ILE LEU ALA ALA ALA ALA ALA GLU ARG ASP VAL VAL TYR SEQRES 36 A 522 PHE THR PHE GLY ASP SER GLU LEU MET ARG ASP ILE TYR SEQRES 37 A 522 SER MET HIS THR PHE LEU THR GLU ARG LYS LEU ASP VAL SEQRES 38 A 522 GLY LYS VAL TYR LYS LEU LEU LEU ARG TYR TYR ASN GLU SEQRES 39 A 522 GLU CYS ARG ASN CYS SER THR PRO GLY PRO ASP ILE LYS SEQRES 40 A 522 LEU TYR PRO PHE ILE TYR HIS ALA VAL GLU SER SER ALA SEQRES 41 A 522 GLU THR SEQRES 1 B 522 GLY ASN LEU PRO PRO GLU LYS LYS TRP LEU GLY THR PRO SEQRES 2 B 522 ILE GLU GLU MET ARG LYS MET PRO ARG CYS GLY ILE HIS SEQRES 3 B 522 LEU PRO SER LEU ARG PRO SER ALA SER HIS THR VAL THR SEQRES 4 B 522 VAL ARG VAL ASP LEU LEU ARG ALA GLY GLU VAL PRO LYS SEQRES 5 B 522 PRO PHE PRO THR HIS TYR LYS ASP LEU TRP ASP ASN LYS SEQRES 6 B 522 HIS VAL LYS MET PRO CYS SER GLU GLN ASN LEU TYR PRO SEQRES 7 B 522 VAL GLU ASP GLU ASN GLY GLU ARG THR ALA GLY SER ARG SEQRES 8 B 522 TRP GLU LEU ILE GLN THR ALA LEU LEU ASN LYS PHE THR SEQRES 9 B 522 ARG PRO GLN ASN LEU LYS ASP ALA ILE LEU LYS TYR ASN SEQRES 10 B 522 VAL ALA TYR SER LYS LYS TRP ASP PHE THR ALA LEU VAL SEQRES 11 B 522 ASP PHE TRP ASP LYS VAL LEU GLU GLU ALA GLU ALA GLN SEQRES 12 B 522 HIS LEU TYR GLN SER ILE LEU PRO ASP MET VAL LYS ILE SEQRES 13 B 522 ALA LEU CYS LEU PRO ASN ILE CYS THR GLN PRO ILE PRO SEQRES 14 B 522 LEU LEU LYS GLN LYS MET ASN HIS SER VAL THR MET SER SEQRES 15 B 522 GLN GLU GLN ILE ALA SER LEU LEU ALA ASN ALA PHE PHE SEQRES 16 B 522 CYS THR PHE PRO ARG ARG ASN ALA LYS MET LYS SER GLU SEQRES 17 B 522 TYR SER SER TYR PRO ASP ILE ASN PHE ASN ARG LEU PHE SEQRES 18 B 522 GLU GLY ARG SER SER ARG LYS PRO GLU LYS LEU LYS THR SEQRES 19 B 522 LEU PHE CYS TYR PHE ARG ARG VAL THR GLU LYS LYS PRO SEQRES 20 B 522 THR GLY LEU VAL THR PHE THR ARG GLN SER LEU GLU ASP SEQRES 21 B 522 PHE PRO GLU TRP GLU ARG CYS GLU LYS PRO LEU THR ARG SEQRES 22 B 522 LEU HIS VAL THR TYR GLU GLY THR ILE GLU GLY ASN GLY SEQRES 23 B 522 ARG GLY MET LEU GLN VAL ASP PHE ALA ASN ARG PHE VAL SEQRES 24 B 522 GLY GLY GLY VAL THR GLY ALA GLY LEU VAL GLN GLU GLN SEQRES 25 B 522 ILE ARG PHE LEU ILE ASN PRO GLU LEU ILE VAL SER ARG SEQRES 26 B 522 LEU PHE THR GLU VAL LEU ASP HIS ASN GLU CYS LEU ILE SEQRES 27 B 522 ILE THR GLY THR GLU GLN TYR SER GLU TYR THR GLY TYR SEQRES 28 B 522 ALA GLU THR TYR ARG TRP ALA ARG SER HIS GLU ASP GLY SEQRES 29 B 522 SER GLU LYS ASP ASP TRP GLN ARG ARG CYS THR GLU ILE SEQRES 30 B 522 VAL ALA ILE ASP ALA LEU HIS PHE ARG ARG TYR LEU ASP SEQRES 31 B 522 GLN PHE VAL PRO GLU LYS VAL ARG ARG GLU LEU ASN LYS SEQRES 32 B 522 ALA TYR CYS GLY PHE LEU ARG PRO GLY VAL PRO SER GLU SEQRES 33 B 522 ASN LEU SER ALA VAL ALA THR GLY ASN TRP GLY CYS GLY SEQRES 34 B 522 ALA PHE GLY GLY ASP ALA ARG LEU LYS ALA LEU ILE GLN SEQRES 35 B 522 ILE LEU ALA ALA ALA ALA ALA GLU ARG ASP VAL VAL TYR SEQRES 36 B 522 PHE THR PHE GLY ASP SER GLU LEU MET ARG ASP ILE TYR SEQRES 37 B 522 SER MET HIS THR PHE LEU THR GLU ARG LYS LEU ASP VAL SEQRES 38 B 522 GLY LYS VAL TYR LYS LEU LEU LEU ARG TYR TYR ASN GLU SEQRES 39 B 522 GLU CYS ARG ASN CYS SER THR PRO GLY PRO ASP ILE LYS SEQRES 40 B 522 LEU TYR PRO PHE ILE TYR HIS ALA VAL GLU SER SER ALA SEQRES 41 B 522 GLU THR HET V3L A1001 36 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET V3L B1001 36 HET SO4 B1002 5 HET SO4 B1003 5 HET SO4 B1004 5 HET SO4 B1005 5 HET SO4 B1006 5 HETNAM V3L 2'-O-(5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSYL)ADENOSINE 5'- HETNAM 2 V3L (DIHYDROGEN PHOSPHATE) HETNAM SO4 SULFATE ION FORMUL 3 V3L 2(C15 H23 N5 O14 P2) FORMUL 4 SO4 10(O4 S 2-) FORMUL 15 HOH *967(H2 O) HELIX 1 1 PRO A 450 MET A 454 5 5 HELIX 2 2 ARG A 528 LEU A 537 1 10 HELIX 3 3 ARG A 542 TYR A 553 1 12 HELIX 4 4 ASN A 554 SER A 558 5 5 HELIX 5 5 PHE A 563 LYS A 572 1 10 HELIX 6 6 GLU A 575 SER A 585 1 11 HELIX 7 7 SER A 585 CYS A 596 1 12 HELIX 8 8 CYS A 596 CYS A 601 1 6 HELIX 9 9 GLN A 620 PHE A 632 1 13 HELIX 10 10 PHE A 654 GLU A 659 5 6 HELIX 11 11 SER A 663 LYS A 682 1 20 HELIX 12 12 THR A 718 GLY A 723 1 6 HELIX 13 13 VAL A 746 ASN A 755 1 10 HELIX 14 14 PRO A 756 ILE A 759 5 4 HELIX 15 15 VAL A 760 THR A 765 1 6 HELIX 16 16 TYR A 788 TYR A 792 5 5 HELIX 17 17 ARG A 824 PHE A 829 5 6 HELIX 18 18 VAL A 830 LEU A 846 1 17 HELIX 19 19 PRO A 851 LEU A 855 5 5 HELIX 20 20 CYS A 865 GLY A 869 5 5 HELIX 21 21 ASP A 871 ALA A 886 1 16 HELIX 22 22 ASP A 897 ARG A 914 1 18 HELIX 23 23 ASP A 917 CYS A 933 1 17 HELIX 24 24 LYS A 944 SER A 956 1 13 HELIX 25 25 PRO B 450 MET B 454 5 5 HELIX 26 26 ARG B 478 LEU B 482 5 5 HELIX 27 27 ARG B 528 LEU B 537 1 10 HELIX 28 28 ARG B 542 TYR B 553 1 12 HELIX 29 29 ASN B 554 SER B 558 5 5 HELIX 30 30 PHE B 563 LYS B 572 1 10 HELIX 31 31 GLU B 575 SER B 585 1 11 HELIX 32 32 SER B 585 CYS B 596 1 12 HELIX 33 33 CYS B 596 CYS B 601 1 6 HELIX 34 34 GLN B 620 PHE B 632 1 13 HELIX 35 35 PHE B 654 GLU B 659 5 6 HELIX 36 36 SER B 663 LYS B 682 1 20 HELIX 37 37 THR B 718 GLY B 723 1 6 HELIX 38 38 VAL B 746 ASN B 755 1 10 HELIX 39 39 PRO B 756 ILE B 759 5 4 HELIX 40 40 VAL B 760 THR B 765 1 6 HELIX 41 41 TYR B 788 TYR B 792 5 5 HELIX 42 42 ARG B 824 PHE B 829 5 6 HELIX 43 43 VAL B 830 LEU B 846 1 17 HELIX 44 44 PRO B 851 LEU B 855 5 5 HELIX 45 45 CYS B 865 GLY B 869 5 5 HELIX 46 46 ASP B 871 ALA B 886 1 16 HELIX 47 47 ASP B 897 ARG B 914 1 18 HELIX 48 48 ASP B 917 CYS B 933 1 17 HELIX 49 49 LYS B 944 SER B 955 1 12 SHEET 1 A10 TRP A 446 GLY A 448 0 SHEET 2 A10 LEU A 711 THR A 714 -1 O VAL A 713 N LEU A 447 SHEET 3 A10 VAL A 890 PHE A 893 1 O TYR A 892 N HIS A 712 SHEET 4 A10 VAL A 858 GLY A 861 1 N VAL A 858 O VAL A 891 SHEET 5 A10 LEU A 727 ALA A 732 1 N LEU A 727 O ALA A 859 SHEET 6 A10 GLU A 813 ASP A 818 1 O VAL A 815 N ASP A 730 SHEET 7 A10 GLU A 772 THR A 777 -1 N ILE A 776 O ILE A 814 SHEET 8 A10 LEU A 687 SER A 694 -1 N THR A 691 O ILE A 775 SHEET 9 A10 HIS A 614 SER A 619 -1 N MET A 618 O VAL A 688 SHEET 10 A10 HIS A 473 VAL A 475 1 N THR A 474 O SER A 615 SHEET 1 B 2 LEU A 513 TYR A 514 0 SHEET 2 B 2 GLY A 526 SER A 527 -1 O GLY A 526 N TYR A 514 SHEET 1 C 2 SER A 783 THR A 786 0 SHEET 2 C 2 ARG A 793 SER A 797 -1 O ARG A 796 N GLU A 784 SHEET 1 D10 TRP B 446 GLY B 448 0 SHEET 2 D10 LEU B 711 THR B 714 -1 O VAL B 713 N LEU B 447 SHEET 3 D10 VAL B 890 PHE B 893 1 O TYR B 892 N HIS B 712 SHEET 4 D10 VAL B 858 GLY B 861 1 N VAL B 858 O VAL B 891 SHEET 5 D10 LEU B 727 PHE B 731 1 N LEU B 727 O ALA B 859 SHEET 6 D10 GLU B 813 ILE B 817 1 O VAL B 815 N ASP B 730 SHEET 7 D10 GLU B 772 THR B 777 -1 N ILE B 776 O ILE B 814 SHEET 8 D10 LEU B 687 SER B 694 -1 N THR B 691 O ILE B 775 SHEET 9 D10 HIS B 614 SER B 619 -1 N MET B 618 O VAL B 688 SHEET 10 D10 HIS B 473 VAL B 475 1 N THR B 474 O SER B 615 SHEET 1 E 2 LEU B 513 TYR B 514 0 SHEET 2 E 2 GLY B 526 SER B 527 -1 O GLY B 526 N TYR B 514 SHEET 1 F 2 SER B 783 THR B 786 0 SHEET 2 F 2 ARG B 793 SER B 797 -1 O ALA B 795 N GLU B 784 CISPEP 1 MET A 457 PRO A 458 0 -3.05 CISPEP 2 PHE A 491 PRO A 492 0 -1.09 CISPEP 3 MET B 457 PRO B 458 0 -0.26 CISPEP 4 PHE B 491 PRO B 492 0 3.38 SITE 1 AC1 11 PRO A 469 VAL A 475 VAL A 477 ARG A 478 SITE 2 AC1 11 VAL A 479 ASP A 480 PHE A 491 THR A 493 SITE 3 AC1 11 HOH A1112 HOH A1251 HOH A1416 SITE 1 AC2 1 ARG A 824 SITE 1 AC3 6 ARG A 528 PRO A 636 ARG A 637 ASN A 639 SITE 2 AC3 6 HOH A1237 HOH A1525 SITE 1 AC4 4 SER A 466 ARG A 468 HOH A1191 HOH A1247 SITE 1 AC5 6 ARG A 656 GLY A 739 GLY A 742 ALA A 743 SITE 2 AC5 6 GLY A 744 HOH A1286 SITE 1 AC6 5 ARG A 637 SER A 644 GLU A 645 HOH A1257 SITE 2 AC6 5 HOH A1272 SITE 1 AC7 12 PRO B 469 VAL B 475 VAL B 477 ARG B 478 SITE 2 AC7 12 VAL B 479 ASP B 480 PHE B 491 THR B 493 SITE 3 AC7 12 HOH B1113 HOH B1457 HOH B1602 HOH B1607 SITE 1 AC8 3 ARG B 824 HOH B1416 HOH B1613 SITE 1 AC9 6 ARG B 528 PRO B 636 ARG B 637 ASN B 639 SITE 2 AC9 6 HOH B1167 HOH B1360 SITE 1 BC1 5 PRO B 465 SER B 466 ARG B 468 HOH B1259 SITE 2 BC1 5 HOH B1405 SITE 1 BC2 6 ARG B 656 GLY B 739 GLY B 742 ALA B 743 SITE 2 BC2 6 GLY B 744 HOH B1556 SITE 1 BC3 6 ARG B 637 LYS B 643 SER B 644 GLU B 645 SITE 2 BC3 6 HOH B1476 HOH B1579 CRYST1 66.915 91.283 102.522 90.00 91.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014944 0.000000 0.000312 0.00000 SCALE2 0.000000 0.010955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009756 0.00000