HEADER LYASE 22-DEC-16 5UCN TITLE CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE E142A VARIANT OF TITLE 2 HELICOBACTER PYLORI WITH DHAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FBPA,FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: ATCC 700392 / 26695; SOURCE 6 GENE: FBA, HP_0176; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYSIS, METALLOENZYME, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.JACQUES,J.SYGUSCH REVDAT 3 04-OCT-23 5UCN 1 LINK REVDAT 2 30-MAY-18 5UCN 1 JRNL REVDAT 1 11-APR-18 5UCN 0 JRNL AUTH B.JACQUES,M.COINCON,J.SYGUSCH JRNL TITL ACTIVE SITE REMODELING DURING THE CATALYTIC CYCLE IN JRNL TITL 2 METAL-DEPENDENT FRUCTOSE-1,6-BISPHOSPHATE ALDOLASES. JRNL REF J. BIOL. CHEM. V. 293 7737 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29593097 JRNL DOI 10.1074/JBC.RA117.001098 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 52189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9960 - 4.4442 0.99 3307 186 0.1261 0.1376 REMARK 3 2 4.4442 - 3.5279 0.99 3296 172 0.1217 0.1541 REMARK 3 3 3.5279 - 3.0821 0.98 3275 180 0.1553 0.2009 REMARK 3 4 3.0821 - 2.8003 0.97 3219 182 0.1800 0.2471 REMARK 3 5 2.8003 - 2.5996 0.96 3212 172 0.1677 0.1808 REMARK 3 6 2.5996 - 2.4464 0.95 3182 167 0.1642 0.1908 REMARK 3 7 2.4464 - 2.3239 0.94 3116 178 0.1636 0.1868 REMARK 3 8 2.3239 - 2.2227 0.92 3065 161 0.1630 0.2309 REMARK 3 9 2.2227 - 2.1371 0.91 3047 157 0.1681 0.2424 REMARK 3 10 2.1371 - 2.0634 0.88 2924 170 0.1919 0.2312 REMARK 3 11 2.0634 - 1.9989 0.87 2908 161 0.2130 0.2497 REMARK 3 12 1.9989 - 1.9417 0.82 2744 133 0.2303 0.2369 REMARK 3 13 1.9417 - 1.8906 0.76 2545 137 0.2436 0.3204 REMARK 3 14 1.8906 - 1.8445 0.70 2335 119 0.2655 0.2804 REMARK 3 15 1.8445 - 1.8026 0.64 2124 118 0.2792 0.3273 REMARK 3 16 1.8026 - 1.7642 0.54 1792 112 0.2978 0.3640 REMARK 3 17 1.7642 - 1.7289 0.45 1497 76 0.3206 0.3169 REMARK 3 18 1.7289 - 1.6963 0.36 1196 63 0.3494 0.4103 REMARK 3 19 1.6963 - 1.6660 0.22 727 34 0.3435 0.4793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4698 REMARK 3 ANGLE : 0.792 6326 REMARK 3 CHIRALITY : 0.046 694 REMARK 3 PLANARITY : 0.005 822 REMARK 3 DIHEDRAL : 13.400 2844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0261 19.3518 -22.6616 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.1432 REMARK 3 T33: 0.1035 T12: 0.0139 REMARK 3 T13: 0.0028 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0534 L22: 0.0584 REMARK 3 L33: 0.0567 L12: 0.0446 REMARK 3 L13: 0.0054 L23: -0.0174 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.1064 S13: 0.0494 REMARK 3 S21: -0.0335 S22: 0.0073 S23: 0.0009 REMARK 3 S31: 0.0124 S32: 0.0035 S33: -0.0173 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4630 33.8149 -15.1287 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.1854 REMARK 3 T33: 0.1362 T12: 0.0294 REMARK 3 T13: -0.0019 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 0.0036 L22: 0.0029 REMARK 3 L33: -0.0000 L12: 0.0009 REMARK 3 L13: -0.0001 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0412 S13: 0.0351 REMARK 3 S21: -0.0014 S22: -0.0004 S23: -0.0076 REMARK 3 S31: -0.0231 S32: -0.0345 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8691 38.8807 -19.9739 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1895 REMARK 3 T33: 0.1589 T12: -0.0066 REMARK 3 T13: 0.0077 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0023 REMARK 3 L33: 0.0008 L12: 0.0030 REMARK 3 L13: -0.0006 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: -0.0288 S13: 0.0225 REMARK 3 S21: -0.0286 S22: 0.0360 S23: 0.0054 REMARK 3 S31: -0.0217 S32: -0.0046 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9141 28.2749 -38.7774 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.1057 REMARK 3 T33: 0.0938 T12: -0.0820 REMARK 3 T13: 0.0256 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.0626 L22: 0.0311 REMARK 3 L33: 0.0197 L12: -0.0171 REMARK 3 L13: -0.0348 L23: 0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.0035 S13: 0.0215 REMARK 3 S21: -0.1357 S22: 0.0434 S23: -0.0092 REMARK 3 S31: -0.0257 S32: 0.0292 S33: 0.0425 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6015 -4.3253 -45.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0748 REMARK 3 T33: 0.1198 T12: 0.0049 REMARK 3 T13: 0.0087 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.0545 L22: 0.0398 REMARK 3 L33: 0.0710 L12: -0.0027 REMARK 3 L13: 0.0454 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.0488 S13: -0.0848 REMARK 3 S21: 0.0130 S22: 0.0095 S23: 0.0066 REMARK 3 S31: -0.0424 S32: 0.0174 S33: -0.0142 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2271 -12.4706 -59.4279 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1123 REMARK 3 T33: 0.1668 T12: 0.0179 REMARK 3 T13: 0.0256 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.0034 L22: 0.0002 REMARK 3 L33: 0.0034 L12: 0.0010 REMARK 3 L13: 0.0029 L23: 0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0251 S13: -0.0511 REMARK 3 S21: -0.0332 S22: -0.0117 S23: -0.0170 REMARK 3 S31: -0.0069 S32: 0.0035 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7767 -8.0468 -64.7114 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1388 REMARK 3 T33: 0.1512 T12: 0.0213 REMARK 3 T13: -0.0002 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.0009 L22: 0.0004 REMARK 3 L33: 0.0013 L12: 0.0001 REMARK 3 L13: 0.0012 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0498 S13: -0.0070 REMARK 3 S21: -0.0152 S22: -0.0380 S23: -0.0028 REMARK 3 S31: -0.0073 S32: 0.0102 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8797 11.3220 -54.9075 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.0838 REMARK 3 T33: 0.0912 T12: 0.0216 REMARK 3 T13: -0.0598 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.0662 L22: 0.0187 REMARK 3 L33: 0.0459 L12: -0.0266 REMARK 3 L13: 0.0041 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.0259 S13: 0.0033 REMARK 3 S21: -0.0191 S22: -0.0284 S23: 0.0095 REMARK 3 S31: -0.1243 S32: 0.0043 S33: -0.0546 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1000225658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C4U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PEG 1000, CALCIUM ACETATE, REMARK 280 TRIS-ACETIC ACID BUFFER, PH 8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -212.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 138 REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 ALA A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ILE A 145 REMARK 465 SER A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 ALA A 152 REMARK 465 LEU B 138 REMARK 465 MET B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 ALA B 142 REMARK 465 ASP B 143 REMARK 465 ASN B 144 REMARK 465 ILE B 145 REMARK 465 SER B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 ASP B 151 REMARK 465 ALA B 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 306 O HOH A 507 1.53 REMARK 500 HZ3 LYS B 306 O HOH B 507 1.57 REMARK 500 HH11 ARG B 259 O HOH B 503 1.59 REMARK 500 O HOH A 505 O HOH A 506 2.02 REMARK 500 OE2 GLU A 111 O HOH A 501 2.05 REMARK 500 O HOH B 501 O HOH B 509 2.08 REMARK 500 OE2 GLU A 88 O HOH A 502 2.11 REMARK 500 O HOH A 505 O HOH A 541 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ1 LYS B 158 O HOH A 501 1644 1.45 REMARK 500 O HOH A 668 O HOH B 631 1565 1.99 REMARK 500 O HOH A 575 O HOH A 652 1655 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 215 72.45 54.72 REMARK 500 ASP A 255 -55.62 -144.41 REMARK 500 PHE B 183 60.63 61.61 REMARK 500 LYS B 186 42.65 -77.51 REMARK 500 ILE B 215 74.74 44.65 REMARK 500 ASP B 255 -58.67 -138.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 GLU A 132 OE2 149.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 GLU A 134 OE1 92.7 REMARK 620 3 GLU A 134 OE2 142.1 49.6 REMARK 620 4 HOH A 541 O 67.6 67.4 90.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 180 NE2 93.3 REMARK 620 3 13P A 404 O3 100.4 126.5 REMARK 620 4 13P A 404 O2 156.2 85.3 62.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 82 OD1 REMARK 620 2 GLU B 132 OE2 145.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 GLU B 134 OE1 98.2 REMARK 620 3 HIS B 210 ND1 99.4 81.4 REMARK 620 4 HOH B 509 O 76.0 77.6 157.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 HIS B 180 NE2 80.0 REMARK 620 3 HIS B 210 ND1 93.0 95.2 REMARK 620 4 13P B 404 O3 120.0 148.2 107.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13P B 404 DBREF 5UCN A 1 307 UNP P56109 ALF_HELPY 1 307 DBREF 5UCN B 1 307 UNP P56109 ALF_HELPY 1 307 SEQADV 5UCN ALA A 48 UNP P56109 THR 48 CONFLICT SEQADV 5UCN ILE A 67 UNP P56109 THR 67 CONFLICT SEQADV 5UCN ALA A 142 UNP P56109 GLU 142 ENGINEERED MUTATION SEQADV 5UCN ALA B 48 UNP P56109 THR 48 CONFLICT SEQADV 5UCN ILE B 67 UNP P56109 THR 67 CONFLICT SEQADV 5UCN ALA B 142 UNP P56109 GLU 142 ENGINEERED MUTATION SEQRES 1 A 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 A 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 A 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 A 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 A 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 A 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 A 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 A 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 A 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 A 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 A 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE ALA ASP SEQRES 12 A 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 A 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 A 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 A 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 A 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 A 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 A 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 A 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 A 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 A 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 A 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 A 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 A 307 LEU LEU GLY SER ALA ASN LYS ILE SEQRES 1 B 307 MET LEU VAL LYS GLY ASN GLU ILE LEU LEU LYS ALA HIS SEQRES 2 B 307 LYS GLU GLY TYR GLY VAL GLY ALA PHE ASN PHE VAL ASN SEQRES 3 B 307 PHE GLU MET LEU ASN ALA ILE PHE GLU ALA GLY ASN GLU SEQRES 4 B 307 GLU ASN SER PRO LEU PHE ILE GLN ALA SER GLU GLY ALA SEQRES 5 B 307 ILE LYS TYR MET GLY ILE ASP MET ALA VAL GLY MET VAL SEQRES 6 B 307 LYS ILE MET CYS GLU ARG TYR PRO HIS ILE PRO VAL ALA SEQRES 7 B 307 LEU HIS LEU ASP HIS GLY THR THR PHE GLU SER CYS GLU SEQRES 8 B 307 LYS ALA VAL LYS ALA GLY PHE THR SER VAL MET ILE ASP SEQRES 9 B 307 ALA SER HIS HIS ALA PHE GLU GLU ASN LEU GLU LEU THR SEQRES 10 B 307 SER LYS VAL VAL LYS MET ALA HIS ASN ALA GLY VAL SER SEQRES 11 B 307 VAL GLU ALA GLU LEU GLY ARG LEU MET GLY ILE ALA ASP SEQRES 12 B 307 ASN ILE SER VAL ASP GLU LYS ASP ALA VAL LEU VAL ASN SEQRES 13 B 307 PRO LYS GLU ALA GLU GLN PHE VAL LYS GLU SER GLN VAL SEQRES 14 B 307 ASP TYR LEU ALA PRO ALA ILE GLY THR SER HIS GLY ALA SEQRES 15 B 307 PHE LYS PHE LYS GLY GLU PRO LYS LEU ASP PHE GLU ARG SEQRES 16 B 307 LEU GLN GLU VAL LYS ARG LEU THR ASN ILE PRO LEU VAL SEQRES 17 B 307 LEU HIS GLY ALA SER ALA ILE PRO ASP ASN VAL ARG LYS SEQRES 18 B 307 SER TYR LEU ASP ALA GLY GLY ASP LEU LYS GLY SER LYS SEQRES 19 B 307 GLY VAL PRO PHE GLU PHE LEU GLN GLU SER VAL LYS GLY SEQRES 20 B 307 GLY ILE ASN LYS VAL ASN THR ASP THR ASP LEU ARG ILE SEQRES 21 B 307 ALA PHE ILE ALA GLU VAL ARG LYS VAL ALA ASN GLU ASP SEQRES 22 B 307 LYS SER GLN PHE ASP LEU ARG LYS PHE PHE SER PRO ALA SEQRES 23 B 307 GLN LEU ALA LEU LYS ASN VAL VAL LYS GLU ARG MET LYS SEQRES 24 B 307 LEU LEU GLY SER ALA ASN LYS ILE HET NA A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET 13P A 404 30 HET NA B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET 13P B 404 30 HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE FORMUL 3 NA 2(NA 1+) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 13P 2(C3 H7 O6 P) FORMUL 11 HOH *351(H2 O) HELIX 1 AA1 LYS A 4 GLY A 16 1 13 HELIX 2 AA2 ASN A 26 GLU A 40 1 15 HELIX 3 AA3 GLU A 50 GLY A 57 1 8 HELIX 4 AA4 GLY A 57 TYR A 72 1 16 HELIX 5 AA5 THR A 86 GLY A 97 1 12 HELIX 6 AA6 ALA A 109 ALA A 127 1 19 HELIX 7 AA7 ASN A 156 GLN A 168 1 13 HELIX 8 AA8 ASP A 192 ASN A 204 1 13 HELIX 9 AA9 PRO A 216 ALA A 226 1 11 HELIX 10 AB1 PRO A 237 GLY A 248 1 12 HELIX 11 AB2 ASP A 255 ASP A 273 1 19 HELIX 12 AB3 ASP A 278 LEU A 301 1 24 HELIX 13 AB4 LYS B 4 GLY B 16 1 13 HELIX 14 AB5 ASN B 26 ASN B 41 1 16 HELIX 15 AB6 GLU B 50 GLY B 57 1 8 HELIX 16 AB7 GLY B 57 TYR B 72 1 16 HELIX 17 AB8 THR B 86 GLY B 97 1 12 HELIX 18 AB9 ALA B 109 ALA B 127 1 19 HELIX 19 AC1 ASN B 156 GLN B 168 1 13 HELIX 20 AC2 ASP B 192 ASN B 204 1 13 HELIX 21 AC3 PRO B 216 ALA B 226 1 11 HELIX 22 AC4 PRO B 237 GLY B 248 1 12 HELIX 23 AC5 ASP B 255 ASP B 273 1 19 HELIX 24 AC6 ASP B 278 LEU B 301 1 24 SHEET 1 AA1 9 VAL A 19 ASN A 23 0 SHEET 2 AA1 9 LEU A 44 SER A 49 1 O PHE A 45 N PHE A 22 SHEET 3 AA1 9 VAL A 77 GLY A 84 1 O ALA A 78 N ILE A 46 SHEET 4 AA1 9 SER A 100 ILE A 103 1 O SER A 100 N LEU A 81 SHEET 5 AA1 9 SER A 130 LEU A 135 1 O GLU A 132 N VAL A 101 SHEET 6 AA1 9 TYR A 171 PRO A 174 1 O ALA A 173 N ALA A 133 SHEET 7 AA1 9 LEU A 207 LEU A 209 1 O VAL A 208 N LEU A 172 SHEET 8 AA1 9 ILE A 249 THR A 254 1 O ASN A 250 N LEU A 207 SHEET 9 AA1 9 VAL A 19 ASN A 23 1 N ALA A 21 O THR A 254 SHEET 1 AA2 9 VAL B 19 ASN B 23 0 SHEET 2 AA2 9 LEU B 44 SER B 49 1 O PHE B 45 N PHE B 22 SHEET 3 AA2 9 VAL B 77 GLY B 84 1 O HIS B 80 N ILE B 46 SHEET 4 AA2 9 SER B 100 ILE B 103 1 O SER B 100 N LEU B 81 SHEET 5 AA2 9 SER B 130 LEU B 135 1 O GLU B 132 N ILE B 103 SHEET 6 AA2 9 TYR B 171 PRO B 174 1 O ALA B 173 N ALA B 133 SHEET 7 AA2 9 LEU B 207 LEU B 209 1 O VAL B 208 N LEU B 172 SHEET 8 AA2 9 ILE B 249 THR B 254 1 O LYS B 251 N LEU B 209 SHEET 9 AA2 9 VAL B 19 ASN B 23 1 N ALA B 21 O THR B 254 LINK OD1 ASP A 82 NA NA A 401 1555 1555 2.78 LINK NE2AHIS A 83 ZN A ZN A 402 1555 1555 2.54 LINK NE2BHIS A 83 ZN B ZN A 403 1555 1555 2.01 LINK OE2 GLU A 132 NA NA A 401 1555 1555 3.15 LINK OE1 GLU A 134 ZN A ZN A 402 1555 1555 2.67 LINK OE2 GLU A 134 ZN A ZN A 402 1555 1555 2.56 LINK NE2 HIS A 180 ZN B ZN A 403 1555 1555 1.86 LINK ZN A ZN A 402 O HOH A 541 1555 1555 2.20 LINK ZN B ZN A 403 O3 B13P A 404 1555 1555 2.18 LINK ZN B ZN A 403 O2 B13P A 404 1555 1555 2.68 LINK OD1 ASP B 82 NA NA B 401 1555 1555 2.87 LINK NE2AHIS B 83 ZN A ZN B 402 1555 1555 2.62 LINK NE2BHIS B 83 ZN B ZN B 403 1555 1555 2.17 LINK OE2 GLU B 132 NA NA B 401 1555 1555 3.04 LINK OE1 GLU B 134 ZN A ZN B 402 1555 1555 2.56 LINK NE2 HIS B 180 ZN B ZN B 403 1555 1555 2.06 LINK ND1AHIS B 210 ZN A ZN B 402 1555 1555 2.54 LINK ND1BHIS B 210 ZN B ZN B 403 1555 1555 2.11 LINK ZN A ZN B 402 O HOH B 509 1555 1555 2.47 LINK ZN B ZN B 403 O3 B13P B 404 1555 1555 2.37 SITE 1 AC1 7 GLN A 47 HIS A 80 ASP A 82 GLU A 132 SITE 2 AC1 7 HIS A 210 LYS A 251 ASN A 253 SITE 1 AC2 6 HIS A 83 GLU A 134 HIS A 180 HIS A 210 SITE 2 AC2 6 ZN A 403 HOH A 541 SITE 1 AC3 5 HIS A 83 HIS A 180 HIS A 210 ZN A 402 SITE 2 AC3 5 13P A 404 SITE 1 AC4 14 ASP A 82 HIS A 83 HIS A 180 GLY A 181 SITE 2 AC4 14 LYS A 184 HIS A 210 GLY A 211 ALA A 212 SITE 3 AC4 14 SER A 213 ASN A 253 THR A 254 ASP A 255 SITE 4 AC4 14 THR A 256 ZN A 403 SITE 1 AC5 6 HIS B 80 ASP B 82 GLU B 132 HIS B 210 SITE 2 AC5 6 LYS B 251 ASN B 253 SITE 1 AC6 6 HIS B 83 GLU B 134 HIS B 180 HIS B 210 SITE 2 AC6 6 ZN B 403 HOH B 509 SITE 1 AC7 5 HIS B 83 HIS B 180 HIS B 210 ZN B 402 SITE 2 AC7 5 13P B 404 SITE 1 AC8 14 ASP B 82 HIS B 83 HIS B 180 GLY B 181 SITE 2 AC8 14 LYS B 184 HIS B 210 GLY B 211 ALA B 212 SITE 3 AC8 14 SER B 213 ASN B 253 THR B 254 ASP B 255 SITE 4 AC8 14 THR B 256 ZN B 403 CRYST1 39.308 62.612 64.507 82.17 75.88 74.17 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025440 -0.007215 -0.005878 0.00000 SCALE2 0.000000 0.016601 -0.001242 0.00000 SCALE3 0.000000 0.000000 0.016030 0.00000