HEADER HYDROLASE/HYDROLASE INHIBITOR 16-JUN-17 5W6E TITLE PDE1B COMPLEXED WITH COMPOUND 3S COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOTIDE COMPND 3 PHOSPHODIESTERASE 1B; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 122-487; COMPND 6 SYNONYM: CAM-PDE 1B,63 KDA CAM-PDE; COMPND 7 EC: 3.1.4.17; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE1B, PDE1B1, PDES1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHODIESTERASE, INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.F.VAJDOS REVDAT 3 13-MAR-24 5W6E 1 LINK REVDAT 2 06-JUN-18 5W6E 1 JRNL REVDAT 1 30-MAY-18 5W6E 0 JRNL AUTH J.M.HUMPHREY,M.MOVSESIAN,C.W.AM ENDE,S.L.BECKER,T.A.CHAPPIE, JRNL AUTH 2 S.JENKINSON,J.L.LIRAS,S.LIRAS,C.OROZCO,J.PANDIT,F.F.VAJDOS, JRNL AUTH 3 F.VANDEPUT,E.YANG,F.S.MENNITI JRNL TITL DISCOVERY OF POTENT AND SELECTIVE PERIPHERY-RESTRICTED JRNL TITL 2 QUINAZOLINE INHIBITORS OF THE CYCLIC NUCLEOTIDE JRNL TITL 3 PHOSPHODIESTERASE PDE1. JRNL REF J. MED. CHEM. V. 61 4635 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29718668 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00374 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 40164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2116 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2675 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1766 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3625 ; 1.266 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4308 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 5.677 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;30.672 ;24.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;16.098 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.575 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2957 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5W6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 343112 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 8.110 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M MGCL2, 125 UM 5 REMARK 280 -(5-BROMO-2-PROPOXYPHENYL)-3-PROPYL-1H-PYRAZOLO[4,3-D]PYRIMIDIN- REMARK 280 7(6H)-ONE, 15% PEG 8000, PH 8.5, VAPOR DIFFUSION, TEMPERATURE REMARK 280 298K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.40300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.39100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.39100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.10450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.39100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.39100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.70150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.39100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.39100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.10450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.39100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.39100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.70150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.40300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 139 REMARK 465 SER A 140 REMARK 465 MET A 141 REMARK 465 THR A 142 REMARK 465 TYR A 143 REMARK 465 THR A 144 REMARK 465 SER A 145 REMARK 465 VAL A 146 REMARK 465 GLY A 147 REMARK 465 PRO A 148 REMARK 465 THR A 149 REMARK 465 PRO A 446 REMARK 465 LEU A 447 REMARK 465 ALA A 448 REMARK 465 ASP A 449 REMARK 465 GLU A 450 REMARK 465 ASP A 451 REMARK 465 SER A 452 REMARK 465 LYS A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 ASN A 456 REMARK 465 GLN A 457 REMARK 465 PRO A 458 REMARK 465 SER A 459 REMARK 465 PHE A 460 REMARK 465 GLN A 461 REMARK 465 TRP A 462 REMARK 465 ARG A 463 REMARK 465 GLN A 464 REMARK 465 PRO A 465 REMARK 465 SER A 466 REMARK 465 LEU A 467 REMARK 465 ASP A 468 REMARK 465 VAL A 469 REMARK 465 GLU A 470 REMARK 465 VAL A 471 REMARK 465 GLY A 472 REMARK 465 ASP A 473 REMARK 465 PRO A 474 REMARK 465 ASN A 475 REMARK 465 PRO A 476 REMARK 465 ASP A 477 REMARK 465 GLY A 503 REMARK 465 ILE A 504 REMARK 465 THR A 505 REMARK 465 ASN A 506 REMARK 465 GLN A 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 386 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1279 O HOH A 1380 0.82 REMARK 500 O HOH A 1340 O HOH A 1359 1.18 REMARK 500 O HOH A 1264 O HOH A 1369 1.41 REMARK 500 O HOH A 1103 O HOH A 1159 1.42 REMARK 500 O HOH A 1305 O HOH A 1382 1.63 REMARK 500 CB THR A 152 O HOH A 1127 1.63 REMARK 500 CB VAL A 235 O HOH A 1314 1.68 REMARK 500 CG1 ILE A 256 O HOH A 1378 1.74 REMARK 500 O HOH A 1148 O HOH A 1273 1.76 REMARK 500 O HOH A 1120 O HOH A 1275 1.77 REMARK 500 O HOH A 1298 O HOH A 1302 1.80 REMARK 500 SD MET A 389 O HOH A 1351 1.81 REMARK 500 CD1 ILE A 256 O HOH A 1378 1.85 REMARK 500 O HOH A 1115 O HOH A 1194 1.86 REMARK 500 O HOH A 1110 O HOH A 1268 1.94 REMARK 500 O HOH A 1165 O HOH A 1273 1.94 REMARK 500 O HOH A 1289 O HOH A 1355 2.02 REMARK 500 CG2 VAL A 235 O HOH A 1314 2.04 REMARK 500 CE MET A 389 O HOH A 1105 2.04 REMARK 500 OD1 ASP A 209 O HOH A 1101 2.04 REMARK 500 N VAL A 478 O HOH A 1102 2.04 REMARK 500 O HOH A 1234 O HOH A 1379 2.05 REMARK 500 OD1 ASP A 397 O HOH A 1103 2.08 REMARK 500 O HOH A 1135 O HOH A 1300 2.08 REMARK 500 O HOH A 1118 O HOH A 1386 2.08 REMARK 500 CB ASP A 176 O HOH A 1301 2.12 REMARK 500 OD2 ASP A 209 O HOH A 1104 2.13 REMARK 500 OG SER A 420 O HOH A 1105 2.14 REMARK 500 ND2 ASN A 310 O HOH A 1106 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1286 O HOH A 1345 3554 0.82 REMARK 500 O HOH A 1133 O HOH A 1145 7556 0.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 338 CB CYS A 338 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 388 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 290 59.44 36.41 REMARK 500 LEU A 409 -6.65 93.14 REMARK 500 SER A 414 4.83 -162.97 REMARK 500 ILE A 428 -55.00 -121.31 REMARK 500 ALA A 501 45.07 -74.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 227 NE2 REMARK 620 2 HIS A 263 NE2 97.8 REMARK 620 3 ASP A 264 OD2 97.1 87.2 REMARK 620 4 ASP A 370 OD1 87.0 92.3 175.9 REMARK 620 5 HOH A1114 O 163.6 97.6 89.3 86.8 REMARK 620 6 HOH A1221 O 89.6 171.8 95.4 84.6 74.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 264 OD1 REMARK 620 2 HOH A1114 O 96.0 REMARK 620 3 HOH A1177 O 170.9 89.0 REMARK 620 4 HOH A1180 O 84.8 94.4 87.2 REMARK 620 5 HOH A1215 O 89.5 172.2 86.3 91.5 REMARK 620 6 HOH A1295 O 97.8 87.1 90.1 176.8 86.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0NY A 1003 DBREF 5W6E A 142 507 UNP Q01064 PDE1B_HUMAN 122 487 SEQADV 5W6E GLY A 139 UNP Q01064 EXPRESSION TAG SEQADV 5W6E SER A 140 UNP Q01064 EXPRESSION TAG SEQADV 5W6E MET A 141 UNP Q01064 EXPRESSION TAG SEQRES 1 A 369 GLY SER MET THR TYR THR SER VAL GLY PRO THR TYR SER SEQRES 2 A 369 THR ALA VAL LEU ASN CYS LEU LYS ASN LEU ASP LEU TRP SEQRES 3 A 369 CYS PHE ASP VAL PHE SER LEU ASN GLN ALA ALA ASP ASP SEQRES 4 A 369 HIS ALA LEU ARG THR ILE VAL PHE GLU LEU LEU THR ARG SEQRES 5 A 369 HIS ASN LEU ILE SER ARG PHE LYS ILE PRO THR VAL PHE SEQRES 6 A 369 LEU MET SER PHE LEU ASP ALA LEU GLU THR GLY TYR GLY SEQRES 7 A 369 LYS TYR LYS ASN PRO TYR HIS ASN GLN ILE HIS ALA ALA SEQRES 8 A 369 ASP VAL THR GLN THR VAL HIS CYS PHE LEU LEU ARG THR SEQRES 9 A 369 GLY MET VAL HIS CYS LEU SER GLU ILE GLU LEU LEU ALA SEQRES 10 A 369 ILE ILE PHE ALA ALA ALA ILE HIS ASP TYR GLU HIS THR SEQRES 11 A 369 GLY THR THR ASN SER PHE HIS ILE GLN THR LYS SER GLU SEQRES 12 A 369 CYS ALA ILE VAL TYR ASN ASP ARG SER VAL LEU GLU ASN SEQRES 13 A 369 HIS HIS ILE SER SER VAL PHE ARG LEU MET GLN ASP ASP SEQRES 14 A 369 GLU MET ASN ILE PHE ILE ASN LEU THR LYS ASP GLU PHE SEQRES 15 A 369 VAL GLU LEU ARG ALA LEU VAL ILE GLU MET VAL LEU ALA SEQRES 16 A 369 THR ASP MET SER CYS HIS PHE GLN GLN VAL LYS THR MET SEQRES 17 A 369 LYS THR ALA LEU GLN GLN LEU GLU ARG ILE ASP LYS PRO SEQRES 18 A 369 LYS ALA LEU SER LEU LEU LEU HIS ALA ALA ASP ILE SER SEQRES 19 A 369 HIS PRO THR LYS GLN TRP LEU VAL HIS SER ARG TRP THR SEQRES 20 A 369 LYS ALA LEU MET GLU GLU PHE PHE ARG GLN GLY ASP LYS SEQRES 21 A 369 GLU ALA GLU LEU GLY LEU PRO PHE SER PRO LEU CYS ASP SEQRES 22 A 369 ARG THR SER THR LEU VAL ALA GLN SER GLN ILE GLY PHE SEQRES 23 A 369 ILE ASP PHE ILE VAL GLU PRO THR PHE SER VAL LEU THR SEQRES 24 A 369 ASP VAL ALA GLU LYS SER VAL GLN PRO LEU ALA ASP GLU SEQRES 25 A 369 ASP SER LYS SER LYS ASN GLN PRO SER PHE GLN TRP ARG SEQRES 26 A 369 GLN PRO SER LEU ASP VAL GLU VAL GLY ASP PRO ASN PRO SEQRES 27 A 369 ASP VAL VAL SER PHE ARG SER THR TRP VAL LYS ARG ILE SEQRES 28 A 369 GLN GLU ASN LYS GLN LYS TRP LYS GLU ARG ALA ALA SER SEQRES 29 A 369 GLY ILE THR ASN GLN HET ZN A1001 1 HET MG A1002 1 HET 0NY A1003 24 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 0NY 7,8-DIMETHOXY-N-[(2S)-1-(3-METHYL-1H-PYRAZOL-5-YL) HETNAM 2 0NY PROPAN-2-YL]QUINAZOLIN-4-AMINE FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ FORMUL 4 0NY C17 H21 N5 O2 FORMUL 5 HOH *305(H2 O) HELIX 1 AA1 SER A 151 LEU A 158 1 8 HELIX 2 AA2 LYS A 159 LEU A 161 5 3 HELIX 3 AA3 ASP A 167 ALA A 175 1 9 HELIX 4 AA4 HIS A 178 HIS A 191 1 14 HELIX 5 AA5 ASN A 192 PHE A 197 1 6 HELIX 6 AA6 PRO A 200 LYS A 217 1 18 HELIX 7 AA7 ASN A 224 THR A 242 1 19 HELIX 8 AA8 GLY A 243 LEU A 248 5 6 HELIX 9 AA9 SER A 249 HIS A 263 1 15 HELIX 10 AB1 THR A 271 THR A 278 1 8 HELIX 11 AB2 SER A 280 ASN A 287 1 8 HELIX 12 AB3 SER A 290 MET A 304 1 15 HELIX 13 AB4 GLN A 305 ASN A 310 5 6 HELIX 14 AB5 THR A 316 ALA A 333 1 18 HELIX 15 AB6 THR A 334 SER A 337 5 4 HELIX 16 AB7 CYS A 338 GLN A 352 1 15 HELIX 17 AB8 ASP A 357 ILE A 371 1 15 HELIX 18 AB9 SER A 372 LYS A 376 5 5 HELIX 19 AC1 GLN A 377 GLY A 403 1 27 HELIX 20 AC2 LEU A 416 ILE A 428 1 13 HELIX 21 AC3 ILE A 428 VAL A 444 1 17 HELIX 22 AC4 VAL A 479 ALA A 501 1 23 LINK NE2 HIS A 227 ZN ZN A1001 1555 1555 2.16 LINK NE2 HIS A 263 ZN ZN A1001 1555 1555 2.23 LINK OD2 ASP A 264 ZN ZN A1001 1555 1555 2.04 LINK OD1 ASP A 264 MG MG A1002 1555 1555 2.08 LINK OD1 ASP A 370 ZN ZN A1001 1555 1555 1.98 LINK ZN ZN A1001 O HOH A1114 1555 1555 2.39 LINK ZN ZN A1001 O HOH A1221 1555 1555 2.26 LINK MG MG A1002 O HOH A1114 1555 1555 2.12 LINK MG MG A1002 O HOH A1177 1555 1555 2.20 LINK MG MG A1002 O HOH A1180 1555 1555 2.14 LINK MG MG A1002 O HOH A1215 1555 1555 2.09 LINK MG MG A1002 O HOH A1295 1555 1555 2.15 SITE 1 AC1 6 HIS A 227 HIS A 263 ASP A 264 ASP A 370 SITE 2 AC1 6 HOH A1114 HOH A1221 SITE 1 AC2 6 ASP A 264 HOH A1114 HOH A1177 HOH A1180 SITE 2 AC2 6 HOH A1215 HOH A1295 SITE 1 AC3 12 TYR A 222 HIS A 223 HIS A 373 LEU A 388 SITE 2 AC3 12 GLU A 391 PHE A 392 LEU A 409 GLN A 421 SITE 3 AC3 12 PHE A 424 HOH A1161 HOH A1171 HOH A1263 CRYST1 88.782 88.782 134.806 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007418 0.00000