HEADER TRANSFERASE/DNA 22-MAR-18 6CT9 TITLE STRUCTURE OF THE HUMAN CGAS-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 DOMAIN-CONTAINING PROTEIN COMPND 5 1; COMPND 6 EC: 2.7.7.86; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(P*CP*GP*TP*CP*TP*TP*CP*GP*GP*CP*AP*AP*T)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*AP*AP*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP*GP*A)- COMPND 15 3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CGAS, C6ORF150, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS CGAS, STING, INNATE IMMUNITY, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHOU,A.T.WHITELEY,C.C.DE OLIVEIRA MANN,B.R.MOREHOUSE,J.J.MEKALANOS, AUTHOR 2 P.J.KRANZUSCH REVDAT 4 04-OCT-23 6CT9 1 REMARK REVDAT 3 17-APR-19 6CT9 1 REMARK REVDAT 2 01-AUG-18 6CT9 1 JRNL REVDAT 1 18-JUL-18 6CT9 0 JRNL AUTH W.ZHOU,A.T.WHITELEY,C.C.DE OLIVEIRA MANN,B.R.MOREHOUSE, JRNL AUTH 2 R.P.NOWAK,E.S.FISCHER,N.S.GRAY,J.J.MEKALANOS,P.J.KRANZUSCH JRNL TITL STRUCTURE OF THE HUMAN CGAS-DNA COMPLEX REVEALS ENHANCED JRNL TITL 2 CONTROL OF IMMUNE SURVEILLANCE. JRNL REF CELL V. 174 300 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 30007416 JRNL DOI 10.1016/J.CELL.2018.06.026 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 33166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9846 - 6.5127 1.00 1440 160 0.1971 0.2013 REMARK 3 2 6.5127 - 5.1716 1.00 1327 148 0.1856 0.2113 REMARK 3 3 5.1716 - 4.5185 1.00 1298 144 0.1444 0.1858 REMARK 3 4 4.5185 - 4.1057 1.00 1288 142 0.1539 0.1616 REMARK 3 5 4.1057 - 3.8115 1.00 1267 142 0.1573 0.1875 REMARK 3 6 3.8115 - 3.5869 1.00 1270 141 0.1749 0.2023 REMARK 3 7 3.5869 - 3.4073 1.00 1262 140 0.1825 0.2272 REMARK 3 8 3.4073 - 3.2591 1.00 1253 138 0.1996 0.2380 REMARK 3 9 3.2591 - 3.1336 1.00 1249 139 0.1982 0.2502 REMARK 3 10 3.1336 - 3.0255 1.00 1255 139 0.2214 0.2424 REMARK 3 11 3.0255 - 2.9309 1.00 1232 138 0.2217 0.2495 REMARK 3 12 2.9309 - 2.8472 1.00 1250 140 0.2360 0.2798 REMARK 3 13 2.8472 - 2.7722 1.00 1241 137 0.2494 0.2513 REMARK 3 14 2.7722 - 2.7046 1.00 1230 136 0.2522 0.3201 REMARK 3 15 2.7046 - 2.6431 1.00 1242 139 0.2505 0.3301 REMARK 3 16 2.6431 - 2.5869 1.00 1248 139 0.2624 0.2765 REMARK 3 17 2.5869 - 2.5351 1.00 1230 136 0.2698 0.3433 REMARK 3 18 2.5351 - 2.4873 1.00 1236 138 0.2664 0.3238 REMARK 3 19 2.4873 - 2.4429 1.00 1222 136 0.2785 0.3180 REMARK 3 20 2.4429 - 2.4015 1.00 1220 134 0.2878 0.3410 REMARK 3 21 2.4015 - 2.3627 1.00 1244 137 0.3070 0.3424 REMARK 3 22 2.3627 - 2.3264 1.00 1214 136 0.3064 0.3228 REMARK 3 23 2.3264 - 2.2922 1.00 1240 138 0.3177 0.3610 REMARK 3 24 2.2922 - 2.2599 0.73 892 99 0.3338 0.3980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3577 REMARK 3 ANGLE : 0.720 4924 REMARK 3 CHIRALITY : 0.042 539 REMARK 3 PLANARITY : 0.004 522 REMARK 3 DIHEDRAL : 19.111 2069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9195 -19.5055 -1.8017 REMARK 3 T TENSOR REMARK 3 T11: 0.6801 T22: 0.4136 REMARK 3 T33: 0.5584 T12: 0.0170 REMARK 3 T13: 0.0376 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 0.0796 L22: 0.3254 REMARK 3 L33: 0.0175 L12: -0.1763 REMARK 3 L13: -0.0492 L23: 0.1040 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: 0.2597 S13: 0.6902 REMARK 3 S21: -0.1413 S22: -0.1250 S23: 0.4104 REMARK 3 S31: -0.6142 S32: -0.0239 S33: -0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0951 -32.8619 -0.0439 REMARK 3 T TENSOR REMARK 3 T11: 0.4760 T22: 0.5548 REMARK 3 T33: 0.6151 T12: 0.0161 REMARK 3 T13: 0.0008 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 0.3566 L22: 0.3227 REMARK 3 L33: 0.1998 L12: -0.3601 REMARK 3 L13: -0.3305 L23: 0.2947 REMARK 3 S TENSOR REMARK 3 S11: 0.0828 S12: 0.4871 S13: 0.5969 REMARK 3 S21: 0.5578 S22: 0.2392 S23: 0.4848 REMARK 3 S31: -0.1942 S32: -0.1342 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5542 -52.0493 1.6124 REMARK 3 T TENSOR REMARK 3 T11: 0.5357 T22: 0.9406 REMARK 3 T33: 0.8407 T12: 0.0408 REMARK 3 T13: 0.0557 T23: 0.0845 REMARK 3 L TENSOR REMARK 3 L11: 0.0500 L22: 0.0227 REMARK 3 L33: 0.1124 L12: -0.0126 REMARK 3 L13: -0.0309 L23: -0.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.5524 S12: 0.2936 S13: -0.1836 REMARK 3 S21: 0.5389 S22: -0.1414 S23: -0.2043 REMARK 3 S31: -0.0877 S32: -0.1072 S33: 0.0023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0855 -35.6671 -0.0268 REMARK 3 T TENSOR REMARK 3 T11: 0.5782 T22: 0.7509 REMARK 3 T33: 0.6794 T12: -0.0195 REMARK 3 T13: -0.0267 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.1817 L22: 0.1939 REMARK 3 L33: 0.1088 L12: 0.3600 REMARK 3 L13: 0.1747 L23: -0.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.1160 S12: 0.5560 S13: 0.0686 REMARK 3 S21: -0.1537 S22: 0.0856 S23: -0.3796 REMARK 3 S31: 0.0548 S32: 0.1030 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4330 -60.2691 -0.4776 REMARK 3 T TENSOR REMARK 3 T11: 0.6116 T22: 0.6275 REMARK 3 T33: 0.7317 T12: -0.0358 REMARK 3 T13: -0.0616 T23: -0.0619 REMARK 3 L TENSOR REMARK 3 L11: 0.2370 L22: 0.2505 REMARK 3 L33: 0.0254 L12: -0.2220 REMARK 3 L13: 0.1106 L23: -0.1164 REMARK 3 S TENSOR REMARK 3 S11: 0.5021 S12: -0.2410 S13: -0.4678 REMARK 3 S21: 0.0407 S22: -0.0010 S23: -0.0947 REMARK 3 S31: 0.4619 S32: 0.3763 S33: -0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4790 -61.6379 -0.0379 REMARK 3 T TENSOR REMARK 3 T11: 0.5617 T22: 0.5255 REMARK 3 T33: 0.7260 T12: -0.0099 REMARK 3 T13: 0.0534 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: -0.0050 L22: 0.3082 REMARK 3 L33: -0.0283 L12: 0.0575 REMARK 3 L13: -0.0088 L23: 0.0095 REMARK 3 S TENSOR REMARK 3 S11: -0.6305 S12: 0.1628 S13: -0.4456 REMARK 3 S21: 0.2476 S22: 0.5899 S23: 0.3697 REMARK 3 S31: 0.5201 S32: -0.1134 S33: -0.0013 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6932 -64.0301 -5.6698 REMARK 3 T TENSOR REMARK 3 T11: 0.6329 T22: 0.7899 REMARK 3 T33: 0.9365 T12: -0.1495 REMARK 3 T13: 0.1055 T23: -0.2744 REMARK 3 L TENSOR REMARK 3 L11: 0.0609 L22: 0.0985 REMARK 3 L33: 0.0392 L12: -0.0352 REMARK 3 L13: 0.0193 L23: 0.0443 REMARK 3 S TENSOR REMARK 3 S11: -0.2144 S12: 0.3571 S13: -0.4204 REMARK 3 S21: -0.1287 S22: 0.0416 S23: 0.5217 REMARK 3 S31: 0.4645 S32: -0.3475 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1527 -47.6403 -9.4020 REMARK 3 T TENSOR REMARK 3 T11: 0.5297 T22: 0.8553 REMARK 3 T33: 0.5258 T12: -0.0221 REMARK 3 T13: -0.0463 T23: -0.0815 REMARK 3 L TENSOR REMARK 3 L11: 0.2377 L22: 0.2037 REMARK 3 L33: 0.2501 L12: 0.2335 REMARK 3 L13: 0.0324 L23: -0.0756 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.5435 S13: -0.2552 REMARK 3 S21: -0.8604 S22: 0.0074 S23: 0.5347 REMARK 3 S31: 0.1069 S32: -0.3787 S33: -0.0012 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5329 -34.9924 -12.0591 REMARK 3 T TENSOR REMARK 3 T11: 0.8047 T22: 1.0569 REMARK 3 T33: 0.7773 T12: 0.1505 REMARK 3 T13: -0.1535 T23: 0.2996 REMARK 3 L TENSOR REMARK 3 L11: 0.6859 L22: 4.3564 REMARK 3 L33: 3.5937 L12: -0.9463 REMARK 3 L13: -0.9001 L23: 3.9385 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: 0.0307 S13: 0.2351 REMARK 3 S21: -0.2897 S22: 1.0172 S23: 0.3692 REMARK 3 S31: -0.4778 S32: -0.5322 S33: 0.5629 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8067 -43.9713 -3.0492 REMARK 3 T TENSOR REMARK 3 T11: 0.3924 T22: 0.5555 REMARK 3 T33: 0.4788 T12: 0.0173 REMARK 3 T13: 0.0259 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.4251 L22: 0.0424 REMARK 3 L33: 0.0199 L12: 0.1363 REMARK 3 L13: 0.0590 L23: 0.0461 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.3052 S13: 0.0044 REMARK 3 S21: -0.0689 S22: -0.0779 S23: -0.1870 REMARK 3 S31: -0.0202 S32: 0.0216 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2402 -48.4379 10.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.3448 T22: 0.3724 REMARK 3 T33: 0.3783 T12: 0.0176 REMARK 3 T13: 0.0108 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.6992 L22: 0.1717 REMARK 3 L33: 0.5714 L12: 0.4947 REMARK 3 L13: -0.6545 L23: -0.3154 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.1222 S13: -0.3714 REMARK 3 S21: 0.0836 S22: -0.0499 S23: -0.1275 REMARK 3 S31: 0.2894 S32: -0.0013 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2161 -49.2562 -2.9364 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.5716 REMARK 3 T33: 0.4810 T12: -0.0183 REMARK 3 T13: -0.0057 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: -0.0337 L22: 0.2546 REMARK 3 L33: -0.0065 L12: 0.1283 REMARK 3 L13: 0.0150 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.2261 S12: 0.1943 S13: 0.1749 REMARK 3 S21: -0.3386 S22: -0.1488 S23: 0.4661 REMARK 3 S31: -0.2305 S32: -0.1014 S33: -0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0959 -30.8529 -2.2999 REMARK 3 T TENSOR REMARK 3 T11: 0.3968 T22: 0.4704 REMARK 3 T33: 0.4089 T12: 0.0073 REMARK 3 T13: -0.0264 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.0245 L22: 0.5978 REMARK 3 L33: 0.3146 L12: 0.0812 REMARK 3 L13: -0.0697 L23: -0.1488 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: 0.1172 S13: 0.1079 REMARK 3 S21: -0.0577 S22: 0.0652 S23: 0.0988 REMARK 3 S31: -0.3218 S32: -0.0310 S33: -0.0002 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9076 -39.6016 -1.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.4694 REMARK 3 T33: 0.4025 T12: -0.0023 REMARK 3 T13: 0.0114 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.1501 L22: 1.1170 REMARK 3 L33: 1.0543 L12: -0.1695 REMARK 3 L13: -0.2070 L23: -0.9403 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: 0.0829 S13: 0.0009 REMARK 3 S21: -0.0964 S22: 0.0814 S23: -0.1130 REMARK 3 S31: 0.0479 S32: 0.1642 S33: 0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 498 THROUGH 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3826 -30.6751 -14.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.4831 T22: 0.5705 REMARK 3 T33: 0.3358 T12: 0.0456 REMARK 3 T13: 0.0664 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.1316 L22: 0.3179 REMARK 3 L33: 0.3726 L12: -0.1978 REMARK 3 L13: 0.2019 L23: -0.3755 REMARK 3 S TENSOR REMARK 3 S11: 0.1248 S12: 0.1656 S13: 0.0378 REMARK 3 S21: -0.4970 S22: -0.0240 S23: -0.3885 REMARK 3 S31: -0.3915 S32: 0.2819 S33: 0.0004 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7612 -28.6357 15.5160 REMARK 3 T TENSOR REMARK 3 T11: 1.0144 T22: 1.3478 REMARK 3 T33: 1.1272 T12: -0.2665 REMARK 3 T13: -0.0501 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 0.3281 L22: 0.4625 REMARK 3 L33: 1.1654 L12: -0.4020 REMARK 3 L13: 0.0157 L23: -0.1739 REMARK 3 S TENSOR REMARK 3 S11: 0.1608 S12: -1.7335 S13: 0.6796 REMARK 3 S21: -0.1927 S22: -0.6997 S23: 0.1641 REMARK 3 S31: -0.3277 S32: -0.6001 S33: -0.0262 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9188 -29.5687 13.4958 REMARK 3 T TENSOR REMARK 3 T11: 1.1752 T22: 0.9511 REMARK 3 T33: 1.2350 T12: -0.1694 REMARK 3 T13: -0.1292 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 0.6359 L22: 0.5101 REMARK 3 L33: 1.1900 L12: -0.2748 REMARK 3 L13: 0.1592 L23: 0.7490 REMARK 3 S TENSOR REMARK 3 S11: 0.4036 S12: -0.8094 S13: 0.7905 REMARK 3 S21: -0.2563 S22: -0.7416 S23: 0.8441 REMARK 3 S31: -0.4481 S32: 0.0573 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KM5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-NAOH PH 7.0, 1.4 M SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.92300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 157.84600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.38450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 197.30750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.46150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.92300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 157.84600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 197.30750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.38450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.46150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 156 REMARK 465 ASP A 157 REMARK 465 ALA A 158 REMARK 465 ALA A 159 REMARK 465 PRO A 160 REMARK 465 ARG A 255 REMARK 465 ASN A 256 REMARK 465 PRO A 257 REMARK 465 LYS A 258 REMARK 465 LYS A 292 REMARK 465 ASP A 293 REMARK 465 THR A 294 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 ARG A 302 REMARK 465 GLU A 366 REMARK 465 GLY A 367 REMARK 465 ASN A 368 REMARK 465 PHE A 522 REMARK 465 DT B 1 REMARK 465 DT B 2 REMARK 465 DT B 3 REMARK 465 DT B 17 REMARK 465 DA C 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DA C 13 O HOH C 101 1.98 REMARK 500 OP1 DA C 10 O HOH C 102 2.01 REMARK 500 O HOH A 713 O HOH A 777 2.06 REMARK 500 O3' DT B 16 O HOH B 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 221 -68.67 73.44 REMARK 500 SER A 243 -128.84 53.83 REMARK 500 ARG A 246 -26.89 73.98 REMARK 500 SER A 345 152.63 102.38 REMARK 500 PHE A 516 71.53 56.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 115.5 REMARK 620 3 CYS A 397 SG 105.4 128.7 REMARK 620 4 CYS A 404 SG 97.2 100.0 104.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 DBREF 6CT9 A 157 522 UNP Q8N884 CGAS_HUMAN 157 522 DBREF 6CT9 B 1 17 PDB 6CT9 6CT9 1 17 DBREF 6CT9 C 1 17 PDB 6CT9 6CT9 1 17 SEQADV 6CT9 SER A 156 UNP Q8N884 EXPRESSION TAG SEQADV 6CT9 ASN A 187 UNP Q8N884 LYS 187 ENGINEERED MUTATION SEQADV 6CT9 ARG A 195 UNP Q8N884 LEU 195 ENGINEERED MUTATION SEQRES 1 A 367 SER ASP ALA ALA PRO GLY ALA SER LYS LEU ARG ALA VAL SEQRES 2 A 367 LEU GLU LYS LEU LYS LEU SER ARG ASP ASP ILE SER THR SEQRES 3 A 367 ALA ALA GLY MET VAL ASN GLY VAL VAL ASP HIS LEU LEU SEQRES 4 A 367 ARG ARG LEU LYS CYS ASP SER ALA PHE ARG GLY VAL GLY SEQRES 5 A 367 LEU LEU ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SEQRES 6 A 367 SER ALA PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU SEQRES 7 A 367 VAL PRO ARG ILE GLN LEU GLU GLU TYR SER ASN THR ARG SEQRES 8 A 367 ALA TYR TYR PHE VAL LYS PHE LYS ARG ASN PRO LYS GLU SEQRES 9 A 367 ASN PRO LEU SER GLN PHE LEU GLU GLY GLU ILE LEU SER SEQRES 10 A 367 ALA SER LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS SEQRES 11 A 367 GLU GLU ILE ASN ASP ILE LYS ASP THR ASP VAL ILE MET SEQRES 12 A 367 LYS ARG LYS ARG GLY GLY SER PRO ALA VAL THR LEU LEU SEQRES 13 A 367 ILE SER GLU LYS ILE SER VAL ASP ILE THR LEU ALA LEU SEQRES 14 A 367 GLU SER LYS SER SER TRP PRO ALA SER THR GLN GLU GLY SEQRES 15 A 367 LEU ARG ILE GLN ASN TRP LEU SER ALA LYS VAL ARG LYS SEQRES 16 A 367 GLN LEU ARG LEU LYS PRO PHE TYR LEU VAL PRO LYS HIS SEQRES 17 A 367 ALA LYS GLU GLY ASN GLY PHE GLN GLU GLU THR TRP ARG SEQRES 18 A 367 LEU SER PHE SER HIS ILE GLU LYS GLU ILE LEU ASN ASN SEQRES 19 A 367 HIS GLY LYS SER LYS THR CYS CYS GLU ASN LYS GLU GLU SEQRES 20 A 367 LYS CYS CYS ARG LYS ASP CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 367 LEU LEU GLU GLN LEU LYS GLU ARG PHE LYS ASP LYS LYS SEQRES 22 A 367 HIS LEU ASP LYS PHE SER SER TYR HIS VAL LYS THR ALA SEQRES 23 A 367 PHE PHE HIS VAL CYS THR GLN ASN PRO GLN ASP SER GLN SEQRES 24 A 367 TRP ASP ARG LYS ASP LEU GLY LEU CYS PHE ASP ASN CYS SEQRES 25 A 367 VAL THR TYR PHE LEU GLN CYS LEU ARG THR GLU LYS LEU SEQRES 26 A 367 GLU ASN TYR PHE ILE PRO GLU PHE ASN LEU PHE SER SER SEQRES 27 A 367 ASN LEU ILE ASP LYS ARG SER LYS GLU PHE LEU THR LYS SEQRES 28 A 367 GLN ILE GLU TYR GLU ARG ASN ASN GLU PHE PRO VAL PHE SEQRES 29 A 367 ASP GLU PHE SEQRES 1 B 17 DT DT DT DC DG DT DC DT DT DC DG DG DC SEQRES 2 B 17 DA DA DT DT SEQRES 1 C 17 DA DA DA DT DT DG DC DC DG DA DA DG DA SEQRES 2 C 17 DC DG DA DA HET ZN A 601 1 HETNAM ZN ZINC ION FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *103(H2 O) HELIX 1 AA1 GLY A 161 LYS A 173 1 13 HELIX 2 AA2 SER A 175 LYS A 198 1 24 HELIX 3 AA3 GLY A 212 GLU A 216 1 5 HELIX 4 AA4 LEU A 262 GLN A 264 5 3 HELIX 5 AA5 SER A 272 ASP A 290 1 19 HELIX 6 AA6 PRO A 331 GLN A 335 5 5 HELIX 7 AA7 SER A 345 LYS A 355 1 11 HELIX 8 AA8 PHE A 379 ASN A 389 1 11 HELIX 9 AA9 CYS A 405 PHE A 424 1 20 HELIX 10 AB1 SER A 434 ASN A 449 1 16 HELIX 11 AB2 GLN A 451 LYS A 458 5 8 HELIX 12 AB3 ASP A 459 GLU A 478 1 20 HELIX 13 AB4 ASP A 497 ASN A 514 1 18 HELIX 14 AB5 PHE A 516 GLU A 521 1 6 SHEET 1 AA1 7 VAL A 206 THR A 211 0 SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA1 7 ILE A 316 SER A 326 1 O GLU A 325 N LEU A 232 SHEET 4 AA1 7 PHE A 357 PRO A 361 -1 O LEU A 359 N LEU A 324 SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O SER A 378 N TYR A 358 SHEET 6 AA1 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375 SHEET 7 AA1 7 ILE A 237 GLU A 241 -1 N GLU A 240 O PHE A 250 SHEET 1 AA2 5 VAL A 206 THR A 211 0 SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O MET A 229 N LEU A 209 SHEET 3 AA2 5 ILE A 316 SER A 326 1 O GLU A 325 N LEU A 232 SHEET 4 AA2 5 VAL A 308 ILE A 312 -1 N ILE A 312 O ILE A 316 SHEET 5 AA2 5 VAL A 296 MET A 298 -1 N ILE A 297 O LEU A 311 SHEET 1 AA3 2 LEU A 266 GLU A 267 0 SHEET 2 AA3 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.04 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.29 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.24 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.38 CISPEP 1 SER A 305 PRO A 306 0 -0.18 SITE 1 AC1 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 CRYST1 99.782 99.782 236.769 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010022 0.005786 0.000000 0.00000 SCALE2 0.000000 0.011572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004224 0.00000