HEADER FLUORESCENT PROTEIN 21-SEP-18 6HPS TITLE NEAR-INFRARED DUAL BIOLUMINESCENCE IMAGING IN VIVO USING INFRA- TITLE 2 LUCIFERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERIN 4-MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LUCIFERASE; COMPND 5 EC: 1.13.12.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTINUS PYRALIS; SOURCE 3 ORGANISM_COMMON: COMMON EASTERN FIREFLY; SOURCE 4 ORGANISM_TAXID: 7054; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS NEAR-INFRARED BIOLUMINESCENCE IMAGING, P. PYRALIS LUCIFERASE, ANL KEYWDS 2 SUPERFAMILY, LIGASE, ADENYLATING ENZYMES, LUCIFERASE, DOMAIN KEYWDS 3 ALTERNATION, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.N.PARKINSON,C.STOWE,J.C.ANDERSON REVDAT 3 24-JAN-24 6HPS 1 REMARK REVDAT 2 30-OCT-19 6HPS 1 JRNL REVDAT 1 23-OCT-19 6HPS 0 JRNL AUTH C.L.STOWE,T.A.BURLEY,H.ALLAN,M.VINCI,G.KRAMER-MAREK, JRNL AUTH 2 D.M.CIOBOTA,G.N.PARKINSON,T.L.SOUTHWORTH,G.AGLIARDI, JRNL AUTH 3 A.HOTBLACK,M.F.LYTHGOE,B.R.BRANCHINI,T.L.KALBER, JRNL AUTH 4 J.C.ANDERSON,M.A.PULE JRNL TITL NEAR-INFRARED DUAL BIOLUMINESCENCE IMAGING IN MOUSE MODELS JRNL TITL 2 OF CANCER USING INFRALUCIFERIN. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 31610848 JRNL DOI 10.7554/ELIFE.45801 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 17435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.4360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8426 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.00000 REMARK 3 B22 (A**2) : -9.93000 REMARK 3 B33 (A**2) : 11.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.748 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.665 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8712 ; 0.012 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 8066 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11816 ; 1.776 ; 1.761 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18856 ; 0.705 ; 1.703 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1080 ; 4.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;28.698 ;19.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1296 ;15.380 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;13.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1140 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9680 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1610 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6HPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012043. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO 171.39.46 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18228 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 22.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.22700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3IEP REMARK 200 REMARK 200 REMARK: THIN FLAT PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM AMMONIUM SULFATE, 50 MM HEPES REMARK 280 PH 7.0, 2% PEG 1000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.00800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 4 REMARK 465 LYS A 544 REMARK 465 GLY A 545 REMARK 465 GLY A 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 525 N THR B 527 2.15 REMARK 500 OG1 THR B 346 O MET B 396 2.17 REMARK 500 O SER B 298 NH1 ARG B 330 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 359 C - N - CD ANGL. DEV. = -37.9 DEGREES REMARK 500 PRO B 359 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 PRO B 359 C - N - CD ANGL. DEV. = -17.9 DEGREES REMARK 500 PRO B 359 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 17 107.08 -59.38 REMARK 500 SER A 201 -91.82 50.44 REMARK 500 PRO A 205 138.29 -38.87 REMARK 500 PRO A 289 -32.64 -37.84 REMARK 500 SER A 298 -106.44 143.46 REMARK 500 THR A 299 -123.56 63.62 REMARK 500 LEU A 309 99.44 -56.71 REMARK 500 ALA A 317 157.35 177.94 REMARK 500 HIS A 332 53.15 71.34 REMARK 500 THR A 346 -71.05 70.43 REMARK 500 ASP A 356 44.84 -149.93 REMARK 500 LYS A 358 57.07 -142.82 REMARK 500 PRO A 359 -92.19 39.69 REMARK 500 ASN A 385 19.93 56.28 REMARK 500 VAL A 435 -67.53 -92.67 REMARK 500 TYR A 444 -113.92 -81.92 REMARK 500 LYS A 445 62.22 -103.59 REMARK 500 ASP A 475 -72.06 133.79 REMARK 500 PRO A 523 108.52 -54.74 REMARK 500 LEU A 526 11.42 57.55 REMARK 500 LYS B 148 129.27 -172.92 REMARK 500 GLN B 159 63.99 22.76 REMARK 500 HIS B 171 -36.74 -130.67 REMARK 500 SER B 199 41.20 -90.61 REMARK 500 SER B 201 -39.02 84.68 REMARK 500 PRO B 205 136.36 -29.43 REMARK 500 PRO B 211 172.33 -58.77 REMARK 500 ILE B 231 88.90 -69.10 REMARK 500 TYR B 266 -70.99 -54.45 REMARK 500 GLU B 269 106.94 -164.87 REMARK 500 GLU B 270 -58.48 -27.42 REMARK 500 ALA B 296 -42.16 -23.69 REMARK 500 LYS B 297 56.09 -147.07 REMARK 500 LEU B 309 95.70 -63.20 REMARK 500 ALA B 317 161.79 177.88 REMARK 500 HIS B 332 52.91 72.19 REMARK 500 THR B 346 -72.12 76.47 REMARK 500 ASP B 356 81.41 -171.28 REMARK 500 PRO B 359 -76.68 25.18 REMARK 500 VAL B 384 104.78 -37.78 REMARK 500 ASN B 385 -0.34 87.58 REMARK 500 ASN B 404 62.30 -151.09 REMARK 500 LYS B 445 -82.15 68.79 REMARK 500 ALA B 452 -46.85 157.99 REMARK 500 VAL B 506 -157.66 -88.08 REMARK 500 THR B 507 -123.55 -98.10 REMARK 500 LYS B 510 43.73 -103.65 REMARK 500 LEU B 512 69.73 -105.68 REMARK 500 LEU B 526 -52.25 47.24 REMARK 500 ASP B 531 100.72 -59.66 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 330 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GKH A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GKH B 601 DBREF 6HPS A 4 546 UNP P08659 LUCI_PHOPY 4 546 DBREF 6HPS B 4 546 UNP P08659 LUCI_PHOPY 4 546 SEQRES 1 A 543 ALA LYS ASN ILE LYS LYS GLY PRO ALA PRO PHE TYR PRO SEQRES 2 A 543 LEU GLU ASP GLY THR ALA GLY GLU GLN LEU HIS LYS ALA SEQRES 3 A 543 MET LYS ARG TYR ALA LEU VAL PRO GLY THR ILE ALA PHE SEQRES 4 A 543 THR ASP ALA HIS ILE GLU VAL ASN ILE THR TYR ALA GLU SEQRES 5 A 543 TYR PHE GLU MET SER VAL ARG LEU ALA GLU ALA MET LYS SEQRES 6 A 543 ARG TYR GLY LEU ASN THR ASN HIS ARG ILE VAL VAL CYS SEQRES 7 A 543 SER GLU ASN SER LEU GLN PHE PHE MET PRO VAL LEU GLY SEQRES 8 A 543 ALA LEU PHE ILE GLY VAL ALA VAL ALA PRO ALA ASN ASP SEQRES 9 A 543 ILE TYR ASN GLU ARG GLU LEU LEU ASN SER MET ASN ILE SEQRES 10 A 543 SER GLN PRO THR VAL VAL PHE VAL SER LYS LYS GLY LEU SEQRES 11 A 543 GLN LYS ILE LEU ASN VAL GLN LYS LYS LEU PRO ILE ILE SEQRES 12 A 543 GLN LYS ILE ILE ILE MET ASP SER LYS THR ASP TYR GLN SEQRES 13 A 543 GLY PHE GLN SER MET TYR THR PHE VAL THR SER HIS LEU SEQRES 14 A 543 PRO PRO GLY PHE ASN GLU TYR ASP PHE VAL PRO GLU SER SEQRES 15 A 543 PHE ASP ARG ASP LYS THR ILE ALA LEU ILE MET ASN SER SEQRES 16 A 543 SER GLY SER THR GLY LEU PRO LYS GLY VAL ALA LEU PRO SEQRES 17 A 543 HIS ARG THR ALA CYS VAL ARG PHE SER HIS ALA ARG ASP SEQRES 18 A 543 PRO ILE PHE GLY ASN GLN ILE ILE PRO ASP THR ALA ILE SEQRES 19 A 543 LEU SER VAL VAL PRO PHE HIS HIS GLY PHE GLY MET PHE SEQRES 20 A 543 THR THR LEU GLY TYR LEU ILE CYS GLY PHE ARG VAL VAL SEQRES 21 A 543 LEU MET TYR ARG PHE GLU GLU GLU LEU PHE LEU ARG SER SEQRES 22 A 543 LEU GLN ASP TYR LYS ILE GLN SER ALA LEU LEU VAL PRO SEQRES 23 A 543 THR LEU PHE SER PHE PHE ALA LYS SER THR LEU ILE ASP SEQRES 24 A 543 LYS TYR ASP LEU SER ASN LEU HIS GLU ILE ALA SER GLY SEQRES 25 A 543 GLY ALA PRO LEU SER LYS GLU VAL GLY GLU ALA VAL ALA SEQRES 26 A 543 LYS ARG PHE HIS LEU PRO GLY ILE ARG GLN GLY TYR GLY SEQRES 27 A 543 LEU THR GLU THR THR SER ALA ILE LEU ILE THR PRO GLU SEQRES 28 A 543 GLY ASP ASP LYS PRO GLY ALA VAL GLY LYS VAL VAL PRO SEQRES 29 A 543 PHE PHE GLU ALA LYS VAL VAL ASP LEU ASP THR GLY LYS SEQRES 30 A 543 THR LEU GLY VAL ASN GLN ARG GLY GLU LEU CYS VAL ARG SEQRES 31 A 543 GLY PRO MET ILE MET SER GLY TYR VAL ASN ASN PRO GLU SEQRES 32 A 543 ALA THR ASN ALA LEU ILE ASP LYS ASP GLY TRP LEU HIS SEQRES 33 A 543 SER GLY ASP ILE ALA TYR TRP ASP GLU ASP GLU HIS PHE SEQRES 34 A 543 PHE ILE VAL ASP ARG LEU LYS SER LEU ILE LYS TYR LYS SEQRES 35 A 543 GLY TYR GLN VAL ALA PRO ALA GLU LEU GLU SER ILE LEU SEQRES 36 A 543 LEU GLN HIS PRO ASN ILE PHE ASP ALA GLY VAL ALA GLY SEQRES 37 A 543 LEU PRO ASP ASP ASP ALA GLY GLU LEU PRO ALA ALA VAL SEQRES 38 A 543 VAL VAL LEU GLU HIS GLY LYS THR MET THR GLU LYS GLU SEQRES 39 A 543 ILE VAL ASP TYR VAL ALA SER GLN VAL THR THR ALA LYS SEQRES 40 A 543 LYS LEU ARG GLY GLY VAL VAL PHE VAL ASP GLU VAL PRO SEQRES 41 A 543 LYS GLY LEU THR GLY LYS LEU ASP ALA ARG LYS ILE ARG SEQRES 42 A 543 GLU ILE LEU ILE LYS ALA LYS LYS GLY GLY SEQRES 1 B 543 ALA LYS ASN ILE LYS LYS GLY PRO ALA PRO PHE TYR PRO SEQRES 2 B 543 LEU GLU ASP GLY THR ALA GLY GLU GLN LEU HIS LYS ALA SEQRES 3 B 543 MET LYS ARG TYR ALA LEU VAL PRO GLY THR ILE ALA PHE SEQRES 4 B 543 THR ASP ALA HIS ILE GLU VAL ASN ILE THR TYR ALA GLU SEQRES 5 B 543 TYR PHE GLU MET SER VAL ARG LEU ALA GLU ALA MET LYS SEQRES 6 B 543 ARG TYR GLY LEU ASN THR ASN HIS ARG ILE VAL VAL CYS SEQRES 7 B 543 SER GLU ASN SER LEU GLN PHE PHE MET PRO VAL LEU GLY SEQRES 8 B 543 ALA LEU PHE ILE GLY VAL ALA VAL ALA PRO ALA ASN ASP SEQRES 9 B 543 ILE TYR ASN GLU ARG GLU LEU LEU ASN SER MET ASN ILE SEQRES 10 B 543 SER GLN PRO THR VAL VAL PHE VAL SER LYS LYS GLY LEU SEQRES 11 B 543 GLN LYS ILE LEU ASN VAL GLN LYS LYS LEU PRO ILE ILE SEQRES 12 B 543 GLN LYS ILE ILE ILE MET ASP SER LYS THR ASP TYR GLN SEQRES 13 B 543 GLY PHE GLN SER MET TYR THR PHE VAL THR SER HIS LEU SEQRES 14 B 543 PRO PRO GLY PHE ASN GLU TYR ASP PHE VAL PRO GLU SER SEQRES 15 B 543 PHE ASP ARG ASP LYS THR ILE ALA LEU ILE MET ASN SER SEQRES 16 B 543 SER GLY SER THR GLY LEU PRO LYS GLY VAL ALA LEU PRO SEQRES 17 B 543 HIS ARG THR ALA CYS VAL ARG PHE SER HIS ALA ARG ASP SEQRES 18 B 543 PRO ILE PHE GLY ASN GLN ILE ILE PRO ASP THR ALA ILE SEQRES 19 B 543 LEU SER VAL VAL PRO PHE HIS HIS GLY PHE GLY MET PHE SEQRES 20 B 543 THR THR LEU GLY TYR LEU ILE CYS GLY PHE ARG VAL VAL SEQRES 21 B 543 LEU MET TYR ARG PHE GLU GLU GLU LEU PHE LEU ARG SER SEQRES 22 B 543 LEU GLN ASP TYR LYS ILE GLN SER ALA LEU LEU VAL PRO SEQRES 23 B 543 THR LEU PHE SER PHE PHE ALA LYS SER THR LEU ILE ASP SEQRES 24 B 543 LYS TYR ASP LEU SER ASN LEU HIS GLU ILE ALA SER GLY SEQRES 25 B 543 GLY ALA PRO LEU SER LYS GLU VAL GLY GLU ALA VAL ALA SEQRES 26 B 543 LYS ARG PHE HIS LEU PRO GLY ILE ARG GLN GLY TYR GLY SEQRES 27 B 543 LEU THR GLU THR THR SER ALA ILE LEU ILE THR PRO GLU SEQRES 28 B 543 GLY ASP ASP LYS PRO GLY ALA VAL GLY LYS VAL VAL PRO SEQRES 29 B 543 PHE PHE GLU ALA LYS VAL VAL ASP LEU ASP THR GLY LYS SEQRES 30 B 543 THR LEU GLY VAL ASN GLN ARG GLY GLU LEU CYS VAL ARG SEQRES 31 B 543 GLY PRO MET ILE MET SER GLY TYR VAL ASN ASN PRO GLU SEQRES 32 B 543 ALA THR ASN ALA LEU ILE ASP LYS ASP GLY TRP LEU HIS SEQRES 33 B 543 SER GLY ASP ILE ALA TYR TRP ASP GLU ASP GLU HIS PHE SEQRES 34 B 543 PHE ILE VAL ASP ARG LEU LYS SER LEU ILE LYS TYR LYS SEQRES 35 B 543 GLY TYR GLN VAL ALA PRO ALA GLU LEU GLU SER ILE LEU SEQRES 36 B 543 LEU GLN HIS PRO ASN ILE PHE ASP ALA GLY VAL ALA GLY SEQRES 37 B 543 LEU PRO ASP ASP ASP ALA GLY GLU LEU PRO ALA ALA VAL SEQRES 38 B 543 VAL VAL LEU GLU HIS GLY LYS THR MET THR GLU LYS GLU SEQRES 39 B 543 ILE VAL ASP TYR VAL ALA SER GLN VAL THR THR ALA LYS SEQRES 40 B 543 LYS LEU ARG GLY GLY VAL VAL PHE VAL ASP GLU VAL PRO SEQRES 41 B 543 LYS GLY LEU THR GLY LYS LEU ASP ALA ARG LYS ILE ARG SEQRES 42 B 543 GLU ILE LEU ILE LYS ALA LYS LYS GLY GLY HET GKH A 601 42 HET GKH B 601 42 HETNAM GKH [(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 GKH BIS(OXIDANYL)OXOLAN-2-YL]METHYL ~{N}-[[2-[(~{E})-2-(6- HETNAM 3 GKH OXIDANYL-1,3-BENZOTHIAZOL-2-YL)ETHENYL]-1,3-THIAZOL-4- HETNAM 4 GKH YL]CARBONYL]SULFAMATE FORMUL 3 GKH 2(C23 H20 N8 O8 S3) HELIX 1 AA1 THR A 21 VAL A 36 1 16 HELIX 2 AA2 TYR A 53 GLY A 71 1 19 HELIX 3 AA3 PHE A 88 GLY A 99 1 12 HELIX 4 AA4 ASN A 110 GLN A 122 1 13 HELIX 5 AA5 GLY A 132 GLN A 140 1 9 HELIX 6 AA6 LYS A 141 LEU A 143 5 3 HELIX 7 AA7 MET A 164 SER A 170 1 7 HELIX 8 AA8 ASN A 177 PHE A 181 5 5 HELIX 9 AA9 HIS A 212 ASP A 224 1 13 HELIX 10 AB1 HIS A 245 GLY A 259 1 15 HELIX 11 AB2 GLU A 269 TYR A 280 1 12 HELIX 12 AB3 VAL A 288 THR A 290 5 3 HELIX 13 AB4 LEU A 291 ALA A 296 1 6 HELIX 14 AB5 SER A 320 HIS A 332 1 13 HELIX 15 AB6 THR A 343 THR A 346 5 4 HELIX 16 AB7 ASN A 404 ILE A 412 1 9 HELIX 17 AB8 ALA A 450 HIS A 461 1 12 HELIX 18 AB9 THR A 494 VAL A 506 1 13 HELIX 19 AC1 THR A 507 LYS A 511 5 5 HELIX 20 AC2 ASP A 531 ALA A 542 1 12 HELIX 21 AC3 THR B 21 LEU B 35 1 15 HELIX 22 AC4 TYR B 53 GLY B 71 1 19 HELIX 23 AC5 PHE B 88 GLY B 99 1 12 HELIX 24 AC6 ASN B 110 GLN B 122 1 13 HELIX 25 AC7 GLY B 132 LYS B 141 1 10 HELIX 26 AC8 SER B 163 LEU B 172 1 10 HELIX 27 AC9 ASN B 177 PHE B 181 5 5 HELIX 28 AD1 HIS B 212 ASP B 224 1 13 HELIX 29 AD2 HIS B 245 GLY B 259 1 15 HELIX 30 AD3 GLU B 269 TYR B 280 1 12 HELIX 31 AD4 LEU B 291 LYS B 297 1 7 HELIX 32 AD5 LEU B 300 TYR B 304 5 5 HELIX 33 AD6 SER B 320 HIS B 332 1 13 HELIX 34 AD7 LEU B 342 THR B 346 5 5 HELIX 35 AD8 ASN B 404 ILE B 412 1 9 HELIX 36 AD9 ALA B 452 HIS B 461 1 10 HELIX 37 AE1 THR B 494 VAL B 506 1 13 HELIX 38 AE2 ASP B 531 LYS B 544 1 14 SHEET 1 AA1 5 LYS A 8 LYS A 9 0 SHEET 2 AA1 5 GLU A 370 VAL A 374 -1 O ALA A 371 N LYS A 8 SHEET 3 AA1 5 GLY A 388 ARG A 393 -1 O CYS A 391 N LYS A 372 SHEET 4 AA1 5 LEU A 418 TRP A 426 -1 O ALA A 424 N GLY A 388 SHEET 5 AA1 5 PHE A 432 ARG A 437 -1 O VAL A 435 N ILE A 423 SHEET 1 AA2 9 VAL A 49 THR A 52 0 SHEET 2 AA2 9 ILE A 40 ASP A 44 -1 N ASP A 44 O VAL A 49 SHEET 3 AA2 9 ARG A 261 LEU A 264 1 O VAL A 262 N ALA A 41 SHEET 4 AA2 9 ALA A 236 SER A 239 1 N ILE A 237 O VAL A 263 SHEET 5 AA2 9 SER A 284 LEU A 286 1 O LEU A 286 N LEU A 238 SHEET 6 AA2 9 GLU A 311 SER A 314 1 O ALA A 313 N ALA A 285 SHEET 7 AA2 9 ARG A 337 GLY A 341 1 O ARG A 337 N ILE A 312 SHEET 8 AA2 9 ALA A 348 ILE A 351 -1 O LEU A 350 N TYR A 340 SHEET 9 AA2 9 LYS A 364 VAL A 365 -1 O LYS A 364 N ILE A 351 SHEET 1 AA3 5 ALA A 101 ALA A 105 0 SHEET 2 AA3 5 ARG A 77 CYS A 81 1 N VAL A 80 O ALA A 105 SHEET 3 AA3 5 VAL A 125 VAL A 128 1 O PHE A 127 N VAL A 79 SHEET 4 AA3 5 LYS A 148 ILE A 151 1 O LYS A 148 N VAL A 126 SHEET 5 AA3 5 GLN A 162 SER A 163 1 O GLN A 162 N ILE A 151 SHEET 1 AA4 3 ILE A 192 ASN A 197 0 SHEET 2 AA4 3 GLY A 207 PRO A 211 -1 O VAL A 208 N MET A 196 SHEET 3 AA4 3 GLY A 400 TYR A 401 -1 O GLY A 400 N ALA A 209 SHEET 1 AA5 2 ILE A 442 LYS A 443 0 SHEET 2 AA5 2 GLN A 448 VAL A 449 -1 O VAL A 449 N ILE A 442 SHEET 1 AA6 3 ILE A 464 LEU A 472 0 SHEET 2 AA6 3 LEU A 480 LEU A 487 -1 O LEU A 480 N LEU A 472 SHEET 3 AA6 3 GLY A 515 PHE A 518 1 O VAL A 517 N VAL A 485 SHEET 1 AA7 3 LYS B 8 LYS B 9 0 SHEET 2 AA7 3 GLU B 370 VAL B 374 -1 O ALA B 371 N LYS B 8 SHEET 3 AA7 3 THR B 381 LEU B 382 -1 O LEU B 382 N VAL B 373 SHEET 1 AA8 5 LYS B 8 LYS B 9 0 SHEET 2 AA8 5 GLU B 370 VAL B 374 -1 O ALA B 371 N LYS B 8 SHEET 3 AA8 5 GLY B 388 ARG B 393 -1 O CYS B 391 N LYS B 372 SHEET 4 AA8 5 LEU B 418 TRP B 426 -1 O LEU B 418 N VAL B 392 SHEET 5 AA8 5 PHE B 432 ARG B 437 -1 O ASP B 436 N ILE B 423 SHEET 1 AA9 9 VAL B 49 THR B 52 0 SHEET 2 AA9 9 ILE B 40 ASP B 44 -1 N ASP B 44 O VAL B 49 SHEET 3 AA9 9 ARG B 261 LEU B 264 1 O VAL B 262 N ALA B 41 SHEET 4 AA9 9 ALA B 236 SER B 239 1 N ILE B 237 O VAL B 263 SHEET 5 AA9 9 SER B 284 LEU B 286 1 O LEU B 286 N LEU B 238 SHEET 6 AA9 9 GLU B 311 SER B 314 1 O ALA B 313 N ALA B 285 SHEET 7 AA9 9 ARG B 337 TYR B 340 1 O ARG B 337 N SER B 314 SHEET 8 AA9 9 LEU B 350 ILE B 351 -1 O LEU B 350 N TYR B 340 SHEET 9 AA9 9 LYS B 364 VAL B 365 -1 O LYS B 364 N ILE B 351 SHEET 1 AB1 4 ALA B 101 ALA B 105 0 SHEET 2 AB1 4 ARG B 77 CYS B 81 1 N ILE B 78 O ALA B 103 SHEET 3 AB1 4 VAL B 125 VAL B 128 1 O PHE B 127 N CYS B 81 SHEET 4 AB1 4 LYS B 148 ILE B 151 1 O ILE B 150 N VAL B 126 SHEET 1 AB2 3 ILE B 192 SER B 198 0 SHEET 2 AB2 3 LYS B 206 PRO B 211 -1 O LEU B 210 N LEU B 194 SHEET 3 AB2 3 GLY B 400 TYR B 401 -1 O GLY B 400 N ALA B 209 SHEET 1 AB3 2 ILE B 442 TYR B 444 0 SHEET 2 AB3 2 TYR B 447 VAL B 449 -1 O VAL B 449 N ILE B 442 SHEET 1 AB4 3 ILE B 464 LEU B 472 0 SHEET 2 AB4 3 LEU B 480 LEU B 487 -1 O ALA B 482 N ALA B 470 SHEET 3 AB4 3 GLY B 515 PHE B 518 1 O VAL B 517 N VAL B 485 SITE 1 AC1 17 HIS A 245 PHE A 247 ALA A 313 SER A 314 SITE 2 AC1 17 GLY A 316 ALA A 317 PRO A 318 ARG A 337 SITE 3 AC1 17 GLY A 339 TYR A 340 GLY A 341 LEU A 342 SITE 4 AC1 17 THR A 343 ALA A 348 VAL A 362 ASP A 422 SITE 5 AC1 17 LYS A 529 SITE 1 AC2 19 HIS B 245 PHE B 247 SER B 314 GLY B 315 SITE 2 AC2 19 GLY B 316 ALA B 317 PRO B 318 ARG B 337 SITE 3 AC2 19 GLY B 339 TYR B 340 GLY B 341 LEU B 342 SITE 4 AC2 19 THR B 343 THR B 346 ALA B 348 ILE B 351 SITE 5 AC2 19 ASP B 422 ARG B 437 LYS B 529 CRYST1 47.509 114.016 101.557 90.00 98.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021049 0.000000 0.003027 0.00000 SCALE2 0.000000 0.008771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009948 0.00000